Wall clock time and date at job start Tue Mar 31 2020 06:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35596 * 117.00125 * 2 1 4 4 C 1.38523 * 120.08341 * 359.97438 * 3 2 1 5 5 C 1.38028 * 120.30319 * 180.02562 * 4 3 2 6 6 C 1.39921 * 120.47959 * 0.02562 * 5 4 3 7 7 C 1.48378 * 119.92318 * 179.97438 * 6 5 4 8 8 C 1.39777 * 120.53650 * 0.02562 * 7 6 5 9 9 C 1.38410 * 118.31162 * 179.97438 * 8 7 6 10 10 C 1.38315 * 119.28084 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.48100 * 179.97438 * 10 9 8 12 12 C 1.53000 * 117.50012 * 343.74489 * 11 10 9 13 13 C 1.53004 * 117.49814 * 275.08472 * 11 10 9 14 14 N 1.31888 * 121.03782 * 359.97438 * 10 9 8 15 15 C 1.31749 * 121.84845 * 359.69808 * 14 10 9 16 16 C 1.38622 * 120.15884 * 359.67711 * 6 5 4 17 17 C 1.40526 * 119.68570 * 0.59597 * 16 6 5 18 18 C 1.41177 * 120.23180 * 179.70253 * 17 16 6 19 19 H 1.07999 * 120.00130 * 154.99852 * 18 17 16 20 20 C 1.39906 * 119.99680 * 335.27703 * 18 17 16 21 21 N 1.30880 * 120.00061 * 342.11600 * 20 18 17 22 22 Si 1.86801 * 120.00214 * 162.11783 * 20 18 17 23 23 H 1.48503 * 109.47010 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47239 * 119.99807 * 22 20 18 25 25 H 1.48492 * 109.47552 * 240.00012 * 22 20 18 26 26 H 1.08996 * 109.47273 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46691 * 300.00057 * 1 2 3 28 28 H 1.08997 * 109.47229 * 60.00076 * 1 2 3 29 29 H 1.07994 * 119.84192 * 0.04539 * 4 3 2 30 30 H 1.08008 * 119.75511 * 180.02562 * 5 4 3 31 31 H 1.08003 * 120.84143 * 0.02562 * 8 7 6 32 32 H 1.07997 * 120.35946 * 179.97438 * 9 8 7 33 33 H 1.08999 * 115.55057 * 129.42014 * 11 10 9 34 34 H 1.08998 * 117.49513 * 0.02562 * 12 11 10 35 35 H 1.09000 * 117.49729 * 145.01836 * 12 11 10 36 36 H 1.08999 * 117.50205 * 214.97509 * 13 11 10 37 37 H 1.08996 * 117.49836 * 359.97438 * 13 11 10 38 38 H 1.07997 * 119.70244 * 180.29411 * 15 14 10 39 39 H 1.07998 * 120.15662 * 180.32224 * 16 6 5 40 40 H 0.97001 * 119.99864 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2919 2.3710 -0.0005 5 6 1.9138 3.6032 -0.0011 6 6 3.3101 3.6935 -0.0016 7 6 3.9658 5.0245 -0.0028 8 6 3.1997 6.1936 -0.0028 9 6 3.8590 7.4106 -0.0033 10 6 5.2420 7.4306 -0.0044 11 6 5.9646 8.7532 -0.0056 12 6 5.1597 9.9976 -0.3854 13 6 6.1967 9.4301 -1.3579 14 7 5.9384 6.3106 -0.0044 15 6 5.3550 5.1293 0.0025 16 6 4.0824 2.5423 0.0051 17 6 3.4564 1.2842 -0.0002 18 6 4.2317 0.1045 0.0003 19 1 3.8184 -0.8132 0.3919 20 6 5.5377 0.1255 -0.5013 21 7 5.9253 1.1064 -1.2763 22 14 6.7281 -1.2463 -0.0648 23 1 6.0498 -2.2275 0.8198 24 1 7.1768 -1.9261 -1.3065 25 1 7.9041 -0.6757 0.6398 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2135 2.3131 -0.0002 30 1 1.3183 4.5043 -0.0011 31 1 2.1206 6.1485 -0.0015 32 1 3.2997 8.3344 -0.0038 33 1 6.7386 8.8667 0.7535 34 1 4.1074 9.8598 -0.6341 35 1 5.4043 10.9299 0.1235 36 1 7.1231 9.9894 -1.4884 37 1 5.8272 8.9188 -2.2467 38 1 5.9591 4.2341 0.0071 39 1 5.1601 2.6121 0.0100 40 1 6.8306 1.1207 -1.6243 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238854072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:00 Heat of formation + Delta-G solvation = 23.854569 kcal Electronic energy + Delta-G solvation = -22405.438636 eV Core-core repulsion = 19150.169955 eV Total energy + Delta-G solvation = -3255.268681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39504 -40.35261 -38.33341 -37.46830 -35.66708 -33.64776 -32.51988 -31.68791 -29.50036 -28.03995 -27.16350 -25.22116 -24.73494 -23.15632 -22.51403 -22.24315 -21.24570 -19.35851 -18.35193 -17.85082 -17.43113 -17.02845 -16.38205 -16.29468 -16.20287 -15.81562 -15.42469 -14.94356 -14.74480 -14.59930 -14.23772 -14.01260 -13.67142 -13.49857 -13.09721 -12.88555 -12.74423 -12.73509 -12.38927 -12.23569 -12.10435 -12.01641 -11.82477 -11.44278 -11.32855 -11.23737 -11.06661 -10.72464 -10.30673 -9.95142 -9.43560 -8.69885 -8.37637 -6.23959 -0.15588 0.33778 0.93926 1.22566 1.37715 1.50189 1.52784 2.22161 2.59944 2.81986 2.89839 3.01059 3.32575 3.69866 3.81481 3.92201 4.01561 4.01729 4.05733 4.26028 4.29647 4.35538 4.42084 4.50071 4.54725 4.69080 4.75625 4.77780 4.84726 4.94397 5.01969 5.08703 5.15418 5.23852 5.28027 5.30691 5.41331 5.51514 5.72979 5.79644 5.87339 6.10241 6.28022 6.45620 6.77082 6.90155 7.07576 7.20016 8.35128 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.004359 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.272017 B = 6421.524774 C = 8120.370111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.339 6.339 3 C 0.008 3.992 4 C -0.180 4.180 5 C -0.183 4.183 6 C -0.077 4.077 7 C -0.082 4.082 8 C -0.077 4.077 9 C -0.158 4.158 10 C 0.127 3.873 11 C -0.126 4.126 12 C -0.147 4.147 13 C -0.167 4.167 14 N -0.501 5.501 15 C 0.086 3.914 16 C -0.148 4.148 17 C 0.056 3.944 18 C -0.483 4.483 19 H 0.070 0.930 20 C 0.036 3.964 21 N -0.828 5.828 22 Si 0.976 3.024 23 H -0.261 1.261 24 H -0.266 1.266 25 H -0.264 1.264 26 H 0.110 0.890 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.159 0.841 32 H 0.171 0.829 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.115 0.885 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 12.907 1.440 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.254 6.254 3 C -0.036 4.036 4 C -0.199 4.199 5 C -0.202 4.202 6 C -0.078 4.078 7 C -0.085 4.085 8 C -0.102 4.102 9 C -0.177 4.177 10 C -0.011 4.011 11 C -0.145 4.145 12 C -0.184 4.184 13 C -0.204 4.204 14 N -0.209 5.209 15 C -0.070 4.070 16 C -0.167 4.167 17 C 0.054 3.946 18 C -0.513 4.513 19 H 0.088 0.912 20 C -0.178 4.178 21 N -0.455 5.455 22 Si 0.797 3.203 23 H -0.185 1.185 24 H -0.191 1.191 25 H -0.188 1.188 26 H 0.129 0.871 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.176 0.824 32 H 0.188 0.812 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.581 12.825 1.294 13.378 hybrid contribution -0.320 -1.170 -0.024 1.213 sum -3.901 11.655 1.271 12.356 Atomic orbital electron populations 1.23119 0.78441 1.04297 1.01167 1.85911 1.21682 1.27887 1.89899 1.19563 0.92241 0.84191 1.07646 1.20920 0.99236 0.91849 1.07861 1.20600 0.92577 0.96869 1.10123 1.18547 0.93738 0.90856 1.04665 1.20004 0.94328 0.94170 0.99950 1.21934 1.01515 0.90813 0.95935 1.22171 0.94698 0.99378 1.01490 1.20904 0.91341 0.92889 0.96000 1.20780 1.03654 0.88464 1.01591 1.23234 0.97790 0.95850 1.01566 1.23032 1.02233 1.02844 0.92311 1.67319 1.41981 0.98409 1.13215 1.22765 0.92511 0.94938 0.96787 1.21205 0.99235 0.90551 1.05752 1.17357 0.88986 0.94355 0.93910 1.19536 0.98120 0.96451 1.37185 0.91195 1.26632 0.99833 0.99310 0.91980 1.69878 1.19683 1.32511 1.23382 0.85249 0.77659 0.78216 0.79178 1.18451 1.19063 1.18843 0.87127 0.92610 0.92927 0.84746 0.84976 0.82398 0.81160 0.86379 0.87347 0.85777 0.86779 0.89964 0.84419 0.86721 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 9.81 113.37 1.11 1.88 16 2 O -0.34 -15.54 9.76 -89.06 -0.87 -16.41 16 3 C 0.01 0.42 6.72 23.11 0.16 0.57 16 4 C -0.18 -7.57 9.01 22.29 0.20 -7.37 16 5 C -0.18 -7.50 9.43 22.63 0.21 -7.29 16 6 C -0.08 -3.55 5.87 -20.08 -0.12 -3.66 16 7 C -0.08 -3.35 5.89 -19.95 -0.12 -3.46 16 8 C -0.08 -2.42 9.53 22.68 0.22 -2.20 16 9 C -0.16 -4.28 9.35 22.33 0.21 -4.07 16 10 C 0.13 3.91 6.46 42.57 0.28 4.19 16 11 C -0.13 -2.90 6.21 -11.54 -0.07 -2.97 16 12 C -0.15 -2.21 9.79 30.62 0.30 -1.91 16 13 C -0.17 -3.17 10.24 30.62 0.31 -2.86 16 14 N -0.50 -19.35 10.26 -183.00 -1.88 -21.23 16 15 C 0.09 3.66 10.59 84.96 0.90 4.56 16 16 C -0.15 -7.83 8.07 22.92 0.18 -7.65 16 17 C 0.06 3.12 5.58 -21.23 -0.12 3.00 16 18 C -0.48 -27.24 8.71 23.40 0.20 -27.03 16 19 H 0.07 3.96 7.64 -2.91 -0.02 3.94 16 20 C 0.04 1.90 5.13 85.24 0.44 2.34 16 21 N -0.83 -44.52 10.97 21.82 0.24 -44.28 16 22 Si 0.98 40.18 29.59 68.60 2.03 42.21 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 25 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 26 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.06 1.56 7.66 -2.39 -0.02 1.54 16 28 H 0.05 1.51 7.65 -2.39 -0.02 1.49 16 29 H 0.13 4.59 6.27 -2.91 -0.02 4.57 16 30 H 0.13 4.34 6.24 -2.91 -0.02 4.32 16 31 H 0.16 4.08 6.30 -2.91 -0.02 4.06 16 32 H 0.17 3.11 6.23 -2.91 -0.02 3.09 16 33 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.11 1.42 6.37 -2.39 -0.02 1.40 16 35 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.14 6.35 6.21 -2.91 -0.02 6.33 16 39 H 0.12 6.34 4.32 -2.91 -0.01 6.33 16 40 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 Total: -1.00 -67.41 332.23 4.90 -62.52 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 1.08 Total: 31.11 kcal Atomic # 6 Polarization: -58.23 SS G_CDS: 4.30 Total: -53.93 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -1.64 Total: -65.51 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.87 Total: -16.41 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -67.41 4.90 -62.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238854072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.373 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds