Wall clock time and date at job start Tue Mar 31 2020 06:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35873 * 117.00127 * 2 1 4 4 C 1.39456 * 119.78060 * 0.02797 * 3 2 1 5 5 C 1.37955 * 120.61966 * 179.97438 * 4 3 2 6 6 C 1.39172 * 120.16409 * 359.97438 * 5 4 3 7 7 C 1.47843 * 120.21872 * 180.28151 * 6 5 4 8 8 C 1.40090 * 120.56240 * 309.44536 * 7 6 5 9 9 C 1.38321 * 118.27873 * 179.76042 * 8 7 6 10 10 C 1.38386 * 119.31680 * 0.49078 * 9 8 7 11 11 C 1.50702 * 119.44661 * 179.74643 * 10 9 8 12 12 C 1.52999 * 117.50389 * 343.77002 * 11 10 9 13 13 C 1.53000 * 117.49780 * 275.10687 * 11 10 9 14 14 N 1.31927 * 121.10369 * 359.77143 * 10 9 8 15 15 C 1.31692 * 121.87820 * 359.97405 * 14 10 9 16 16 C 1.41888 * 119.55903 * 0.02562 * 6 5 4 17 17 C 1.40896 * 120.29922 * 180.02562 * 16 6 5 18 18 H 1.07998 * 119.99908 * 333.39302 * 17 16 6 19 19 C 1.40049 * 120.00115 * 153.38488 * 17 16 6 20 20 N 1.30781 * 120.00151 * 344.34364 * 19 17 16 21 21 Si 1.86801 * 120.00031 * 164.34272 * 19 17 16 22 22 H 1.48491 * 109.47238 * 60.00275 * 21 19 17 23 23 H 1.48501 * 109.47068 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47036 * 300.00055 * 21 19 17 25 25 C 1.37937 * 119.77906 * 180.02562 * 3 2 1 26 26 H 1.08993 * 109.46889 * 59.99379 * 1 2 3 27 27 H 1.08997 * 109.46829 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46644 * 300.00095 * 1 2 3 29 29 H 1.07998 * 119.69727 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.91766 * 180.02562 * 5 4 3 31 31 H 1.07997 * 120.85944 * 359.97438 * 8 7 6 32 32 H 1.08007 * 120.33643 * 180.24339 * 9 8 7 33 33 H 1.09004 * 115.54813 * 129.44491 * 11 10 9 34 34 H 1.09004 * 117.49589 * 359.97438 * 12 11 10 35 35 H 1.08993 * 117.50064 * 145.02105 * 12 11 10 36 36 H 1.08997 * 117.50021 * 214.97828 * 13 11 10 37 37 H 1.08995 * 117.50099 * 359.97438 * 13 11 10 38 38 H 1.07990 * 119.72305 * 179.97438 * 15 14 10 39 39 H 0.96996 * 120.00138 * 179.97438 * 20 19 17 40 40 H 1.07994 * 120.09426 * 0.04897 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2819 2.3773 0.0006 5 6 1.8902 3.6155 0.0011 6 6 3.2785 3.7126 0.0016 7 6 3.9316 5.0390 0.0085 8 6 3.5587 6.0214 -0.9180 9 6 4.1972 7.2473 -0.8658 10 6 5.1814 7.4589 0.0837 11 6 5.8829 8.7915 0.1394 12 6 5.7518 9.7104 -1.0769 13 6 7.0779 9.0003 -0.7930 14 7 5.5162 6.5133 0.9406 15 6 4.9346 5.3318 0.9348 16 6 4.0629 2.5303 0.0010 17 6 5.4695 2.6105 0.0021 18 1 5.9614 3.4765 -0.4157 19 6 6.2300 1.5672 0.5449 20 7 5.6618 0.6758 1.3149 21 14 8.0560 1.4488 0.1692 22 1 8.7402 2.6773 0.6463 23 1 8.6274 0.2640 0.8584 24 1 8.2518 1.3106 -1.2964 25 6 3.4236 1.2775 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2039 2.3110 0.0006 30 1 1.2875 4.5117 0.0020 31 1 2.7902 5.8278 -1.6516 32 1 3.9330 8.0300 -1.5617 33 1 5.9236 9.2606 1.1225 34 1 5.1585 9.3508 -1.9177 35 1 5.7067 10.7839 -0.8941 36 1 7.9045 9.6071 -0.4236 37 1 7.3570 8.1737 -1.4463 38 1 5.2363 4.5830 1.6521 39 1 6.1884 -0.0469 1.6906 40 1 4.0098 0.3704 -0.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238854596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:04 Heat of formation + Delta-G solvation = 33.038653 kcal Electronic energy + Delta-G solvation = -22668.316163 eV Core-core repulsion = 19413.445734 eV Total energy + Delta-G solvation = -3254.870429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.79213 -38.74423 -37.06013 -36.10144 -33.72717 -32.01307 -30.92239 -29.79875 -28.29372 -26.47355 -25.34833 -23.70827 -23.13774 -21.99125 -21.15460 -20.67221 -19.69347 -17.82029 -16.54648 -16.23974 -15.81347 -15.40934 -15.04758 -14.87275 -14.77455 -14.57829 -14.01579 -13.32355 -13.21923 -12.84053 -12.73639 -12.35198 -12.19136 -11.85046 -11.56063 -11.45430 -11.39026 -11.24701 -11.17064 -10.92202 -10.54940 -10.49260 -10.34795 -10.11016 -9.98573 -9.65062 -9.27027 -9.13657 -8.75919 -8.12890 -7.60330 -7.00541 -6.71678 -4.53262 1.65367 1.95040 2.70231 2.91439 3.02973 3.06625 3.15920 3.84854 3.85716 4.23936 4.41230 4.49744 4.63478 4.95948 5.06930 5.30062 5.40674 5.47206 5.60057 5.61932 5.68104 5.69467 5.76199 5.81980 5.86043 5.86830 6.00065 6.14259 6.20242 6.24144 6.39395 6.47365 6.70313 6.75928 6.89121 7.01519 7.14412 7.30542 7.43149 7.58181 7.69047 7.85842 7.92824 8.25566 8.63006 8.69609 8.71759 8.79651 10.02796 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.005305 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.962989 B = 5277.117557 C = 7146.929072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.135 3.865 4 C -0.316 4.316 5 C -0.037 4.037 6 C -0.208 4.208 7 C -0.024 4.024 8 C -0.094 4.094 9 C -0.171 4.171 10 C 0.118 3.882 11 C -0.094 4.094 12 C -0.178 4.178 13 C -0.167 4.167 14 N -0.483 5.483 15 C 0.118 3.882 16 C 0.158 3.842 17 C -0.448 4.448 18 H 0.083 0.917 19 C 0.078 3.922 20 N -0.776 5.776 21 Si 0.905 3.095 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.192 4.192 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.163 0.837 39 H 0.285 0.715 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.331 7.865 -3.118 8.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.091 3.909 4 C -0.336 4.336 5 C -0.056 4.056 6 C -0.210 4.210 7 C -0.026 4.026 8 C -0.120 4.120 9 C -0.191 4.191 10 C -0.019 4.019 11 C -0.113 4.113 12 C -0.216 4.216 13 C -0.204 4.204 14 N -0.191 5.191 15 C -0.040 4.040 16 C 0.155 3.845 17 C -0.476 4.476 18 H 0.101 0.899 19 C -0.142 4.142 20 N -0.399 5.399 21 Si 0.729 3.271 22 H -0.185 1.185 23 H -0.201 1.201 24 H -0.187 1.187 25 C -0.212 4.212 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.180 0.820 39 H 0.097 0.903 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.538 7.636 -2.341 8.134 hybrid contribution -0.232 -0.238 -0.709 0.783 sum -1.769 7.398 -3.050 8.195 Atomic orbital electron populations 1.22769 0.80686 1.01944 1.00549 1.86010 1.19578 1.29037 1.89669 1.19017 0.92472 0.82522 0.96850 1.20361 0.97416 0.92432 1.23392 1.20321 0.93154 0.95321 0.96785 1.18393 0.92080 0.90653 1.19922 1.19778 0.95342 0.93715 0.93744 1.21685 0.99494 0.92829 0.97956 1.21662 0.98809 0.97923 1.00699 1.20094 0.94885 0.93520 0.93372 1.20663 1.01448 0.93321 0.95830 1.23055 1.00877 0.97977 0.99648 1.22941 0.91634 1.02935 1.02926 1.67290 1.26762 1.01374 1.23716 1.23127 0.91881 0.92105 0.96844 1.17189 0.92684 0.88855 0.85778 1.19525 0.90959 1.03579 1.33538 0.89856 1.25961 1.01442 0.94173 0.92645 1.69789 1.38802 1.10869 1.20484 0.86379 0.81680 0.78962 0.80055 1.18535 1.20084 1.18669 1.20533 0.89345 0.99094 1.12200 0.93681 0.89853 0.93598 0.88460 0.88894 0.85700 0.85946 0.86825 0.88442 0.88555 0.88639 0.88765 0.82011 0.90339 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.80 101.05 0.99 1.56 16 2 O -0.33 -7.04 10.48 -19.34 -0.20 -7.24 16 3 C 0.14 3.18 6.67 -39.24 -0.26 2.92 16 4 C -0.32 -6.82 9.02 -39.23 -0.35 -7.17 16 5 C -0.04 -0.80 9.52 -39.34 -0.37 -1.18 16 6 C -0.21 -4.81 5.55 -104.23 -0.58 -5.39 16 7 C -0.02 -0.50 4.92 -104.75 -0.51 -1.02 16 8 C -0.09 -1.72 9.70 -38.86 -0.38 -2.10 16 9 C -0.17 -2.81 9.34 -39.50 -0.37 -3.18 16 10 C 0.12 2.06 6.46 -82.50 -0.53 1.53 16 11 C -0.09 -1.31 6.21 -91.77 -0.57 -1.88 16 12 C -0.18 -1.94 9.79 -26.69 -0.26 -2.20 16 13 C -0.17 -2.03 10.24 -26.69 -0.27 -2.30 16 14 N -0.48 -9.78 10.25 -9.10 -0.09 -9.87 16 15 C 0.12 2.54 9.19 -17.09 -0.16 2.38 16 16 C 0.16 3.99 5.56 -106.59 -0.59 3.40 16 17 C -0.45 -11.18 7.13 -37.90 -0.27 -11.46 16 18 H 0.08 2.08 6.63 -52.49 -0.35 1.73 16 19 C 0.08 1.88 5.17 -17.32 -0.09 1.79 16 20 N -0.78 -19.24 10.97 55.55 0.61 -18.64 16 21 Si 0.91 18.35 29.59 -169.99 -5.03 13.32 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 25 C -0.19 -4.91 8.59 -38.78 -0.33 -5.24 16 26 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.68 7.64 -51.93 -0.40 0.29 16 29 H 0.10 1.83 6.25 -52.49 -0.33 1.51 16 30 H 0.09 1.77 8.05 -52.49 -0.42 1.34 16 31 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.12 1.63 6.23 -52.48 -0.33 1.31 16 33 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.10 1.03 6.37 -51.93 -0.33 0.70 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.16 3.64 7.32 -52.49 -0.38 3.26 16 39 H 0.29 6.49 8.29 -40.82 -0.34 6.15 16 40 H 0.13 3.43 6.24 -52.49 -0.33 3.10 16 LS Contribution 334.91 15.07 5.05 5.05 Total: -1.00 -27.46 334.91 -9.52 -36.98 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.93 Total: 9.93 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -4.92 Total: -29.53 kcal Atomic # 7 Polarization: -29.02 SS G_CDS: 0.52 Total: -28.51 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.20 Total: -7.24 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.46 -9.52 -36.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238854596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.015 kcal (2) G-P(sol) polarization free energy of solvation -27.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds