Wall clock time and date at job start Tue Mar 31 2020 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35873 * 117.00127 * 2 1 4 4 C 1.39456 * 119.78060 * 0.02797 * 3 2 1 5 5 C 1.37955 * 120.61966 * 179.97438 * 4 3 2 6 6 C 1.39172 * 120.16409 * 359.97438 * 5 4 3 7 7 C 1.47843 * 120.21872 * 180.28151 * 6 5 4 8 8 C 1.40090 * 120.56240 * 309.44536 * 7 6 5 9 9 C 1.38321 * 118.27873 * 179.76042 * 8 7 6 10 10 C 1.38386 * 119.31680 * 0.49078 * 9 8 7 11 11 C 1.50702 * 119.44661 * 179.74643 * 10 9 8 12 12 C 1.52999 * 117.50389 * 343.77002 * 11 10 9 13 13 C 1.53000 * 117.49780 * 275.10687 * 11 10 9 14 14 N 1.31927 * 121.10369 * 359.77143 * 10 9 8 15 15 C 1.31692 * 121.87820 * 359.97405 * 14 10 9 16 16 C 1.41888 * 119.55903 * 0.02562 * 6 5 4 17 17 C 1.40896 * 120.29922 * 180.02562 * 16 6 5 18 18 H 1.07998 * 119.99908 * 333.39302 * 17 16 6 19 19 C 1.40049 * 120.00115 * 153.38488 * 17 16 6 20 20 N 1.30781 * 120.00151 * 344.34364 * 19 17 16 21 21 Si 1.86801 * 120.00031 * 164.34272 * 19 17 16 22 22 H 1.48491 * 109.47238 * 60.00275 * 21 19 17 23 23 H 1.48501 * 109.47068 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47036 * 300.00055 * 21 19 17 25 25 C 1.37937 * 119.77906 * 180.02562 * 3 2 1 26 26 H 1.08993 * 109.46889 * 59.99379 * 1 2 3 27 27 H 1.08997 * 109.46829 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46644 * 300.00095 * 1 2 3 29 29 H 1.07998 * 119.69727 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.91766 * 180.02562 * 5 4 3 31 31 H 1.07997 * 120.85944 * 359.97438 * 8 7 6 32 32 H 1.08007 * 120.33643 * 180.24339 * 9 8 7 33 33 H 1.09004 * 115.54813 * 129.44491 * 11 10 9 34 34 H 1.09004 * 117.49589 * 359.97438 * 12 11 10 35 35 H 1.08993 * 117.50064 * 145.02105 * 12 11 10 36 36 H 1.08997 * 117.50021 * 214.97828 * 13 11 10 37 37 H 1.08995 * 117.50099 * 359.97438 * 13 11 10 38 38 H 1.07990 * 119.72305 * 179.97438 * 15 14 10 39 39 H 0.96996 * 120.00138 * 179.97438 * 20 19 17 40 40 H 1.07994 * 120.09426 * 0.04897 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2819 2.3773 0.0006 5 6 1.8902 3.6155 0.0011 6 6 3.2785 3.7126 0.0016 7 6 3.9316 5.0390 0.0085 8 6 3.5587 6.0214 -0.9180 9 6 4.1972 7.2473 -0.8658 10 6 5.1814 7.4589 0.0837 11 6 5.8829 8.7915 0.1394 12 6 5.7518 9.7104 -1.0769 13 6 7.0779 9.0003 -0.7930 14 7 5.5162 6.5133 0.9406 15 6 4.9346 5.3318 0.9348 16 6 4.0629 2.5303 0.0010 17 6 5.4695 2.6105 0.0021 18 1 5.9614 3.4765 -0.4157 19 6 6.2300 1.5672 0.5449 20 7 5.6618 0.6758 1.3149 21 14 8.0560 1.4488 0.1692 22 1 8.7402 2.6773 0.6463 23 1 8.6274 0.2640 0.8584 24 1 8.2518 1.3106 -1.2964 25 6 3.4236 1.2775 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2039 2.3110 0.0006 30 1 1.2875 4.5117 0.0020 31 1 2.7902 5.8278 -1.6516 32 1 3.9330 8.0300 -1.5617 33 1 5.9236 9.2606 1.1225 34 1 5.1585 9.3508 -1.9177 35 1 5.7067 10.7839 -0.8941 36 1 7.9045 9.6071 -0.4236 37 1 7.3570 8.1737 -1.4463 38 1 5.2363 4.5830 1.6521 39 1 6.1884 -0.0469 1.6906 40 1 4.0098 0.3704 -0.0018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238854596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:03 Heat of formation + Delta-G solvation = 19.703051 kcal Electronic energy + Delta-G solvation = -22668.894438 eV Core-core repulsion = 19413.445734 eV Total energy + Delta-G solvation = -3255.448704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.25494 -40.37516 -38.45139 -37.47347 -35.51150 -33.54771 -32.42472 -31.56052 -29.84163 -27.94706 -27.06554 -25.11233 -24.50540 -23.06798 -22.77537 -22.15165 -21.19990 -19.56201 -18.00829 -17.81578 -17.27220 -16.94021 -16.66846 -16.35575 -16.33287 -15.78493 -15.34329 -14.97668 -14.69686 -14.43484 -14.23028 -13.90068 -13.65192 -13.55754 -13.11395 -12.87103 -12.78849 -12.69753 -12.55402 -12.30745 -12.09006 -11.78826 -11.73715 -11.50246 -11.32647 -11.27646 -11.05398 -10.60853 -10.25326 -9.61405 -9.42799 -8.79286 -8.45505 -6.40309 0.15118 0.47619 0.94936 1.16642 1.33721 1.43729 1.48883 2.15434 2.65221 2.76019 2.79777 3.03955 3.43172 3.64587 3.93836 4.01035 4.13958 4.18136 4.22314 4.32664 4.35509 4.42561 4.47119 4.50107 4.55189 4.74530 4.81101 4.84441 4.95228 5.02312 5.04887 5.09286 5.16403 5.27396 5.30417 5.34477 5.48637 5.54774 5.82723 5.86918 5.96372 6.08459 6.12682 6.43769 6.85135 6.87819 7.00597 7.22575 8.25562 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.005305 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.962989 B = 5277.117557 C = 7146.929072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.131 3.869 4 C -0.311 4.311 5 C -0.040 4.040 6 C -0.213 4.213 7 C -0.049 4.049 8 C -0.088 4.088 9 C -0.162 4.162 10 C 0.119 3.881 11 C -0.122 4.122 12 C -0.148 4.148 13 C -0.169 4.169 14 N -0.506 5.506 15 C 0.102 3.898 16 C 0.133 3.867 17 C -0.470 4.470 18 H 0.073 0.927 19 C 0.042 3.958 20 N -0.810 5.810 21 Si 0.967 3.033 22 H -0.264 1.264 23 H -0.263 1.263 24 H -0.260 1.260 25 C -0.226 4.226 26 H 0.059 0.941 27 H 0.115 0.885 28 H 0.054 0.946 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.133 0.867 39 H 0.290 0.710 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 10.514 -4.555 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.265 6.265 3 C 0.087 3.913 4 C -0.331 4.331 5 C -0.058 4.058 6 C -0.215 4.215 7 C -0.051 4.051 8 C -0.113 4.113 9 C -0.181 4.181 10 C -0.019 4.019 11 C -0.141 4.141 12 C -0.185 4.185 13 C -0.207 4.207 14 N -0.215 5.215 15 C -0.055 4.055 16 C 0.130 3.870 17 C -0.499 4.499 18 H 0.091 0.909 19 C -0.175 4.175 20 N -0.435 5.435 21 Si 0.788 3.212 22 H -0.188 1.188 23 H -0.187 1.187 24 H -0.184 1.184 25 C -0.247 4.247 26 H 0.078 0.922 27 H 0.133 0.867 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.164 0.836 32 H 0.182 0.818 33 H 0.136 0.864 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.098 0.902 38 H 0.151 0.849 39 H 0.101 0.899 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.695 10.268 -3.773 11.266 hybrid contribution -0.018 -0.936 -0.279 0.977 sum -2.714 9.331 -4.052 10.529 Atomic orbital electron populations 1.23162 0.77507 1.04584 1.01600 1.85977 1.22877 1.28294 1.89395 1.19127 0.92131 0.84018 0.96072 1.20707 0.98951 0.91630 1.21799 1.20679 0.92787 0.96581 0.95797 1.18676 0.92963 0.90987 1.18905 1.19730 0.96239 0.93826 0.95335 1.21942 0.99605 0.92595 0.97184 1.22068 0.97384 0.98076 1.00549 1.20812 0.94682 0.94150 0.92251 1.20753 1.03378 0.92381 0.97578 1.23212 0.98961 0.98913 0.97406 1.23017 0.92599 1.03087 1.01953 1.67282 1.27369 1.01510 1.25307 1.22741 0.92960 0.92479 0.97323 1.17494 0.93313 0.89754 0.86442 1.19551 0.91445 1.03978 1.34911 0.90876 1.26658 1.05187 0.93593 0.92087 1.69852 1.40327 1.11677 1.21603 0.85462 0.76862 0.79022 0.79818 1.18822 1.18729 1.18450 1.20460 0.90638 0.98448 1.15121 0.92241 0.86652 0.92712 0.85201 0.85814 0.83551 0.81811 0.86418 0.87614 0.85733 0.86785 0.90239 0.84902 0.89920 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 9.80 113.37 1.11 1.87 16 2 O -0.35 -15.05 10.48 -92.12 -0.97 -16.01 16 3 C 0.13 6.26 6.67 22.49 0.15 6.41 16 4 C -0.31 -13.08 9.02 22.50 0.20 -12.87 16 5 C -0.04 -1.70 9.52 22.43 0.21 -1.48 16 6 C -0.21 -10.08 5.55 -19.61 -0.11 -10.19 16 7 C -0.05 -2.11 4.92 -19.95 -0.10 -2.21 16 8 C -0.09 -3.05 9.70 22.74 0.22 -2.83 16 9 C -0.16 -4.85 9.34 22.32 0.21 -4.64 16 10 C 0.12 3.97 6.46 42.58 0.28 4.25 16 11 C -0.12 -3.08 6.21 -11.54 -0.07 -3.15 16 12 C -0.15 -2.55 9.79 30.62 0.30 -2.25 16 13 C -0.17 -3.63 10.24 30.62 0.31 -3.31 16 14 N -0.51 -20.83 10.25 -182.71 -1.87 -22.70 16 15 C 0.10 4.57 9.19 85.05 0.78 5.35 16 16 C 0.13 7.08 5.56 -21.14 -0.12 6.96 16 17 C -0.47 -25.05 7.13 23.36 0.17 -24.88 16 18 H 0.07 3.90 6.63 -2.91 -0.02 3.88 16 19 C 0.04 2.13 5.17 85.29 0.44 2.57 16 20 N -0.81 -42.77 10.97 21.84 0.24 -42.53 16 21 Si 0.97 39.42 29.59 68.60 2.03 41.45 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 C -0.23 -12.24 8.59 22.79 0.20 -12.04 16 26 H 0.06 1.56 7.65 -2.39 -0.02 1.54 16 27 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.05 1.50 7.64 -2.39 -0.02 1.48 16 29 H 0.13 4.51 6.25 -2.91 -0.02 4.49 16 30 H 0.12 4.37 8.05 -2.91 -0.02 4.35 16 31 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.16 3.53 6.23 -2.91 -0.02 3.51 16 33 H 0.12 2.87 8.14 -2.38 -0.02 2.85 16 34 H 0.11 1.67 6.37 -2.39 -0.02 1.66 16 35 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.13 6.56 7.32 -2.92 -0.02 6.54 16 39 H 0.29 13.96 8.29 -92.71 -0.77 13.19 16 40 H 0.10 5.91 6.24 -2.91 -0.02 5.89 16 Total: -1.00 -64.24 334.91 4.68 -59.57 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 1.06 Total: 32.68 kcal Atomic # 6 Polarization: -56.64 SS G_CDS: 4.18 Total: -52.46 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -1.63 Total: -65.23 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.97 Total: -16.01 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -64.24 4.68 -59.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238854596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.272 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds