Wall clock time and date at job start Tue Mar 31 2020 06:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35510 * 116.99813 * 2 1 4 4 C 1.39137 * 120.47014 * 0.02562 * 3 2 1 5 5 C 1.38265 * 118.66081 * 179.97438 * 4 3 2 6 6 C 1.40284 * 119.55758 * 359.97438 * 5 4 3 7 7 C 1.47636 * 119.53736 * 179.97438 * 6 5 4 8 8 C 1.32730 * 119.99640 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99744 * 179.97438 * 8 7 6 10 10 C 1.50708 * 109.47113 * 125.00110 * 9 8 7 11 11 C 1.38238 * 120.00078 * 269.73120 * 10 9 8 12 12 C 1.38229 * 119.99593 * 179.76390 * 11 10 9 13 13 C 1.38235 * 120.00188 * 0.50224 * 12 11 10 14 14 C 1.38236 * 120.00073 * 359.75175 * 13 12 11 15 15 C 1.38236 * 119.99444 * 89.99861 * 10 9 8 16 16 N 1.32340 * 120.92176 * 0.02562 * 6 5 4 17 17 C 1.33551 * 121.44550 * 359.97438 * 16 6 5 18 18 C 1.40986 * 119.82316 * 179.97438 * 17 16 6 19 19 H 1.07998 * 119.99620 * 180.02562 * 18 17 16 20 20 C 1.40011 * 120.00287 * 0.02562 * 18 17 16 21 21 N 1.30777 * 120.00238 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47271 * 89.99644 * 22 20 18 24 24 H 1.48499 * 109.46939 * 209.99485 * 22 20 18 25 25 H 1.48497 * 109.47364 * 329.99837 * 22 20 18 26 26 H 1.08995 * 109.47641 * 60.00079 * 1 2 3 27 27 H 1.09006 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47215 * 299.99841 * 1 2 3 29 29 H 1.07998 * 120.66960 * 359.95663 * 4 3 2 30 30 H 1.08002 * 120.22446 * 179.72966 * 5 4 3 31 31 H 1.07997 * 119.99816 * 0.02562 * 7 6 5 32 32 H 1.07997 * 120.00544 * 0.02562 * 8 7 6 33 33 H 1.08996 * 109.47739 * 245.00023 * 9 8 7 34 34 H 1.09000 * 109.47499 * 5.00851 * 9 8 7 35 35 H 1.07999 * 120.00015 * 359.97438 * 11 10 9 36 36 H 1.07999 * 119.99825 * 180.23054 * 12 11 10 37 37 H 1.08001 * 120.00058 * 179.72326 * 13 12 11 38 38 H 1.07997 * 120.00115 * 179.97438 * 14 13 12 39 39 H 1.07997 * 120.00109 * 0.02562 * 15 10 9 40 40 H 0.97000 * 120.00234 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.2959 2.3805 0.0005 5 6 1.9622 3.5920 0.0011 6 6 3.3649 3.6104 0.0016 7 6 4.0758 4.9043 0.0016 8 6 5.4029 4.9323 0.0015 9 6 6.1286 6.2530 0.0009 10 6 7.0848 6.3013 1.1648 11 6 6.6655 6.8012 2.3836 12 6 7.5412 6.8409 3.4524 13 6 8.8391 6.3905 3.2997 14 6 9.2599 5.8955 2.0795 15 6 8.3827 5.8509 1.0120 16 7 4.0597 2.4841 0.0011 17 6 3.4559 1.2929 0.0006 18 6 4.2298 0.1144 -0.0005 19 1 3.7444 -0.8503 -0.0014 20 6 5.6276 0.1948 -0.0005 21 7 6.2154 1.3630 0.0000 22 14 6.6529 -1.3666 -0.0027 23 1 6.9245 -1.7786 -1.4033 24 1 7.9382 -1.1157 0.6975 25 1 5.9113 -2.4468 0.6960 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2165 2.3454 0.0003 30 1 1.4064 4.5181 -0.0029 31 1 3.5162 5.8279 0.0016 32 1 5.9625 4.0087 0.0011 33 1 6.6842 6.3620 -0.9304 34 1 5.4064 7.0645 0.0903 35 1 5.6528 7.1575 2.5016 36 1 7.2126 7.2280 4.4056 37 1 9.5246 6.4257 4.1335 38 1 10.2741 5.5439 1.9600 39 1 8.7116 5.4647 0.0585 40 1 7.1838 1.4187 0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242140482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:47 Heat of formation + Delta-G solvation = 29.753119 kcal Electronic energy + Delta-G solvation = -22301.618480 eV Core-core repulsion = 19046.605580 eV Total energy + Delta-G solvation = -3255.012900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.07303 -38.83327 -36.80836 -34.59117 -33.56101 -31.34169 -30.68057 -30.37603 -28.94218 -26.81433 -26.18403 -24.89723 -22.36634 -21.84446 -21.40343 -20.47159 -18.59022 -17.49753 -16.68534 -16.53736 -15.63502 -15.06045 -14.94780 -14.79144 -14.73092 -14.26669 -13.41410 -13.25048 -13.12096 -12.96616 -12.77413 -12.44553 -12.28161 -12.09953 -12.01942 -11.31217 -11.23397 -11.19902 -10.90671 -10.72112 -10.65341 -10.50667 -10.48461 -10.35898 -9.77088 -9.46939 -8.71488 -8.62243 -8.42264 -8.09298 -7.69877 -6.79641 -6.40742 -4.36640 1.56478 1.61159 2.24671 2.85853 3.12289 3.15194 3.17880 3.62695 3.99080 4.01811 4.44688 4.83384 5.03657 5.09712 5.19211 5.32419 5.54284 5.62513 5.71559 5.72557 5.73359 5.82871 5.89687 5.93002 5.93698 6.03243 6.07839 6.25038 6.25721 6.30326 6.43258 6.65644 6.69027 6.75111 6.86518 6.93874 7.19878 7.21759 7.38186 7.49544 7.65785 7.71453 8.00633 8.24009 8.34022 8.73972 9.04011 10.06311 10.33021 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.004689 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.702410 B = 5970.535909 C = 7591.637967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.310 6.310 3 C -0.034 4.034 4 C -0.147 4.147 5 C -0.275 4.275 6 C 0.145 3.855 7 C -0.108 4.108 8 C -0.131 4.131 9 C -0.053 4.053 10 C -0.063 4.063 11 C -0.116 4.116 12 C -0.121 4.121 13 C -0.132 4.132 14 C -0.120 4.120 15 C -0.113 4.113 16 N -0.452 5.452 17 C 0.254 3.746 18 C -0.414 4.414 19 H 0.089 0.911 20 C 0.068 3.932 21 N -0.716 5.716 22 Si 0.907 3.093 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.261 1.261 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.149 0.851 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 7.672 2.311 8.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.222 6.222 3 C -0.082 4.082 4 C -0.172 4.172 5 C -0.299 4.299 6 C 0.004 3.996 7 C -0.127 4.127 8 C -0.151 4.151 9 C -0.090 4.090 10 C -0.063 4.063 11 C -0.134 4.134 12 C -0.139 4.139 13 C -0.150 4.150 14 C -0.138 4.138 15 C -0.131 4.131 16 N -0.167 5.167 17 C 0.126 3.874 18 C -0.446 4.446 19 H 0.107 0.893 20 C -0.156 4.156 21 N -0.338 5.338 22 Si 0.732 3.268 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.185 1.185 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.166 0.834 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.371 7.587 2.312 8.619 hybrid contribution -0.971 -0.484 0.082 1.088 sum 2.400 7.103 2.394 7.870 Atomic orbital electron populations 1.22744 0.81813 1.01807 0.99887 1.85930 1.18230 1.27949 1.90137 1.20351 0.93708 0.83160 1.11008 1.20856 0.97629 0.92760 1.05917 1.21027 0.94397 0.95999 1.18443 1.19999 0.89603 0.93011 0.96942 1.21403 0.94173 0.94290 1.02854 1.23558 0.95748 0.97920 0.97883 1.19770 0.96789 0.96810 0.95658 1.19864 0.94188 0.96979 0.95281 1.21039 0.99412 1.00204 0.92715 1.21075 0.93956 1.00420 0.98492 1.21058 0.96236 1.00345 0.97394 1.21097 0.99561 0.99831 0.93315 1.21077 0.93325 0.99473 0.99208 1.68988 1.34654 0.95299 1.17769 1.18153 0.84949 0.92240 0.92093 1.19500 0.90591 0.93001 1.41506 0.89255 1.26028 0.98654 0.97186 0.93768 1.70091 1.10275 1.24459 1.28934 0.86324 0.79115 0.82219 0.79179 1.19462 1.20193 1.18533 0.94244 0.89918 0.94243 0.88042 0.88671 0.88053 0.83382 0.90441 0.91280 0.86293 0.86500 0.86627 0.86424 0.86016 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.83 101.05 0.99 1.57 16 2 O -0.31 -7.20 9.60 -18.22 -0.18 -7.37 16 3 C -0.03 -0.86 6.74 -38.03 -0.26 -1.12 16 4 C -0.15 -3.41 9.11 -39.24 -0.36 -3.76 16 5 C -0.28 -6.35 9.82 -38.80 -0.38 -6.73 16 6 C 0.15 3.57 6.71 -83.04 -0.56 3.02 16 7 C -0.11 -2.22 9.49 -37.63 -0.36 -2.58 16 8 C -0.13 -2.57 9.05 -36.19 -0.33 -2.89 16 9 C -0.05 -0.80 5.80 -29.03 -0.17 -0.97 16 10 C -0.06 -0.96 5.12 -104.62 -0.54 -1.49 16 11 C -0.12 -1.66 9.70 -39.58 -0.38 -2.05 16 12 C -0.12 -1.60 10.05 -39.59 -0.40 -1.99 16 13 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 14 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 15 C -0.11 -1.64 9.70 -39.58 -0.38 -2.02 16 16 N -0.45 -12.36 6.78 -7.66 -0.05 -12.41 16 17 C 0.25 7.09 6.56 -84.86 -0.56 6.53 16 18 C -0.41 -11.34 8.94 -37.88 -0.34 -11.68 16 19 H 0.09 2.39 7.31 -52.49 -0.38 2.00 16 20 C 0.07 1.75 5.50 -17.34 -0.10 1.65 16 21 N -0.72 -18.60 11.06 55.55 0.61 -17.99 16 22 Si 0.91 18.93 29.56 -169.99 -5.02 13.91 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 26 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 29 H 0.10 2.01 6.42 -52.49 -0.34 1.68 16 30 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.10 1.76 7.87 -52.49 -0.41 1.35 16 32 H 0.15 3.42 6.97 -52.49 -0.37 3.06 16 33 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.07 0.92 7.76 -51.93 -0.40 0.52 16 35 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.27 6.43 8.29 -40.82 -0.34 6.09 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -30.28 345.11 -9.55 -39.83 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.21 Total: 7.43 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -4.90 Total: -28.60 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 0.56 Total: -30.40 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.18 Total: -7.37 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.28 -9.55 -39.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242140482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.583 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds