Wall clock time and date at job start Tue Mar 31 2020 06:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35510 * 116.99813 * 2 1 4 4 C 1.39137 * 120.47014 * 0.02562 * 3 2 1 5 5 C 1.38265 * 118.66081 * 179.97438 * 4 3 2 6 6 C 1.40284 * 119.55758 * 359.97438 * 5 4 3 7 7 C 1.47636 * 119.53736 * 179.97438 * 6 5 4 8 8 C 1.32730 * 119.99640 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99744 * 179.97438 * 8 7 6 10 10 C 1.50708 * 109.47113 * 125.00110 * 9 8 7 11 11 C 1.38238 * 120.00078 * 269.73120 * 10 9 8 12 12 C 1.38229 * 119.99593 * 179.76390 * 11 10 9 13 13 C 1.38235 * 120.00188 * 0.50224 * 12 11 10 14 14 C 1.38236 * 120.00073 * 359.75175 * 13 12 11 15 15 C 1.38236 * 119.99444 * 89.99861 * 10 9 8 16 16 N 1.32340 * 120.92176 * 0.02562 * 6 5 4 17 17 C 1.33551 * 121.44550 * 359.97438 * 16 6 5 18 18 C 1.40986 * 119.82316 * 179.97438 * 17 16 6 19 19 H 1.07998 * 119.99620 * 180.02562 * 18 17 16 20 20 C 1.40011 * 120.00287 * 0.02562 * 18 17 16 21 21 N 1.30777 * 120.00238 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99983 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47271 * 89.99644 * 22 20 18 24 24 H 1.48499 * 109.46939 * 209.99485 * 22 20 18 25 25 H 1.48497 * 109.47364 * 329.99837 * 22 20 18 26 26 H 1.08995 * 109.47641 * 60.00079 * 1 2 3 27 27 H 1.09006 * 109.47345 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47215 * 299.99841 * 1 2 3 29 29 H 1.07998 * 120.66960 * 359.95663 * 4 3 2 30 30 H 1.08002 * 120.22446 * 179.72966 * 5 4 3 31 31 H 1.07997 * 119.99816 * 0.02562 * 7 6 5 32 32 H 1.07997 * 120.00544 * 0.02562 * 8 7 6 33 33 H 1.08996 * 109.47739 * 245.00023 * 9 8 7 34 34 H 1.09000 * 109.47499 * 5.00851 * 9 8 7 35 35 H 1.07999 * 120.00015 * 359.97438 * 11 10 9 36 36 H 1.07999 * 119.99825 * 180.23054 * 12 11 10 37 37 H 1.08001 * 120.00058 * 179.72326 * 13 12 11 38 38 H 1.07997 * 120.00115 * 179.97438 * 14 13 12 39 39 H 1.07997 * 120.00109 * 0.02562 * 15 10 9 40 40 H 0.97000 * 120.00234 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.2959 2.3805 0.0005 5 6 1.9622 3.5920 0.0011 6 6 3.3649 3.6104 0.0016 7 6 4.0758 4.9043 0.0016 8 6 5.4029 4.9323 0.0015 9 6 6.1286 6.2530 0.0009 10 6 7.0848 6.3013 1.1648 11 6 6.6655 6.8012 2.3836 12 6 7.5412 6.8409 3.4524 13 6 8.8391 6.3905 3.2997 14 6 9.2599 5.8955 2.0795 15 6 8.3827 5.8509 1.0120 16 7 4.0597 2.4841 0.0011 17 6 3.4559 1.2929 0.0006 18 6 4.2298 0.1144 -0.0005 19 1 3.7444 -0.8503 -0.0014 20 6 5.6276 0.1948 -0.0005 21 7 6.2154 1.3630 0.0000 22 14 6.6529 -1.3666 -0.0027 23 1 6.9245 -1.7786 -1.4033 24 1 7.9382 -1.1157 0.6975 25 1 5.9113 -2.4468 0.6960 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2165 2.3454 0.0003 30 1 1.4064 4.5181 -0.0029 31 1 3.5162 5.8279 0.0016 32 1 5.9625 4.0087 0.0011 33 1 6.6842 6.3620 -0.9304 34 1 5.4064 7.0645 0.0903 35 1 5.6528 7.1575 2.5016 36 1 7.2126 7.2280 4.4056 37 1 9.5246 6.4257 4.1335 38 1 10.2741 5.5439 1.9600 39 1 8.7116 5.4647 0.0585 40 1 7.1838 1.4187 0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242140482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:46 Heat of formation + Delta-G solvation = 14.922191 kcal Electronic energy + Delta-G solvation = -22302.261598 eV Core-core repulsion = 19046.605580 eV Total energy + Delta-G solvation = -3255.656018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.67046 -40.08761 -38.54118 -36.09307 -35.32000 -32.76625 -32.25129 -31.70757 -30.52893 -28.22619 -27.93388 -26.42555 -23.54097 -23.39547 -23.04450 -21.83315 -20.17770 -19.36941 -18.40625 -17.61273 -17.35034 -16.68323 -16.32944 -16.29288 -16.00352 -15.69141 -14.88495 -14.77880 -14.48777 -14.24189 -14.17297 -14.07324 -13.89501 -13.40874 -13.33282 -12.94613 -12.89662 -12.70226 -12.48750 -12.13037 -12.11068 -12.00113 -11.88060 -11.75411 -11.54210 -11.29573 -10.23572 -9.98881 -9.75604 -9.59918 -9.51899 -8.60440 -8.27671 -6.33935 0.40422 0.56481 0.60097 1.02860 1.39857 1.47255 1.53478 1.92582 2.24787 2.85515 2.92877 2.96636 3.94224 3.97802 4.05874 4.06689 4.18988 4.22587 4.33927 4.36669 4.40259 4.46257 4.49052 4.60366 4.68492 4.71496 4.73222 4.87611 4.93192 4.96569 5.14666 5.21991 5.22975 5.32965 5.56890 5.62619 5.66605 5.67595 5.78075 5.97633 6.00272 6.18748 6.30269 6.36601 6.44907 6.83118 7.17424 8.16729 8.47247 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.004689 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.702410 B = 5970.535909 C = 7591.637967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.335 6.335 3 C -0.054 4.054 4 C -0.147 4.147 5 C -0.273 4.273 6 C 0.117 3.883 7 C -0.126 4.126 8 C -0.118 4.118 9 C -0.043 4.043 10 C -0.084 4.084 11 C -0.131 4.131 12 C -0.129 4.129 13 C -0.135 4.135 14 C -0.129 4.129 15 C -0.132 4.132 16 N -0.478 5.478 17 C 0.214 3.786 18 C -0.454 4.454 19 H 0.081 0.919 20 C 0.026 3.974 21 N -0.745 5.745 22 Si 0.981 3.019 23 H -0.263 1.263 24 H -0.266 1.266 25 H -0.261 1.261 26 H 0.051 0.949 27 H 0.114 0.886 28 H 0.050 0.950 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 8.699 2.950 9.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.249 6.249 3 C -0.102 4.102 4 C -0.171 4.171 5 C -0.295 4.295 6 C -0.023 4.023 7 C -0.144 4.144 8 C -0.139 4.139 9 C -0.080 4.080 10 C -0.084 4.084 11 C -0.149 4.149 12 C -0.147 4.147 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.150 4.150 16 N -0.194 5.194 17 C 0.086 3.914 18 C -0.486 4.486 19 H 0.099 0.901 20 C -0.196 4.196 21 N -0.367 5.367 22 Si 0.801 3.199 23 H -0.187 1.187 24 H -0.190 1.190 25 H -0.185 1.185 26 H 0.069 0.931 27 H 0.132 0.868 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.144 8.633 2.949 9.649 hybrid contribution -1.012 -0.727 -0.088 1.249 sum 2.131 7.906 2.861 8.674 Atomic orbital electron populations 1.23103 0.78631 1.04356 1.00893 1.85869 1.21533 1.27297 1.90172 1.20421 0.93504 0.84710 1.11559 1.21247 0.99348 0.91964 1.04571 1.21479 0.94208 0.97443 1.16419 1.20746 0.90986 0.93860 0.96728 1.21600 0.94606 0.93850 1.04373 1.23566 0.95602 0.98708 0.95982 1.19721 0.97063 0.94733 0.96494 1.19958 0.94517 0.98254 0.95693 1.21287 1.00253 1.00465 0.92868 1.21434 0.94039 1.00010 0.99168 1.21450 0.96647 0.99248 0.97972 1.21422 1.00421 0.99574 0.93249 1.21292 0.93727 0.99946 1.00005 1.68952 1.35967 0.95956 1.18524 1.18613 0.86776 0.92866 0.93161 1.19669 0.91955 0.92790 1.44149 0.90088 1.26844 0.99121 1.00614 0.92976 1.70188 1.10731 1.26336 1.29479 0.85232 0.77416 0.77810 0.79408 1.18733 1.19020 1.18483 0.93071 0.86804 0.93111 0.84597 0.85314 0.84455 0.87339 0.89185 0.89019 0.85378 0.84160 0.83956 0.84413 0.85843 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.83 113.37 1.11 1.93 16 2 O -0.33 -15.74 9.60 -88.12 -0.85 -16.59 16 3 C -0.05 -2.79 6.74 23.27 0.16 -2.63 16 4 C -0.15 -6.66 9.11 22.49 0.20 -6.46 16 5 C -0.27 -12.29 9.82 22.77 0.22 -12.06 16 6 C 0.12 5.82 6.71 42.05 0.28 6.10 16 7 C -0.13 -5.11 9.49 23.58 0.22 -4.88 16 8 C -0.12 -4.67 9.05 24.51 0.22 -4.45 16 9 C -0.04 -1.27 5.80 29.10 0.17 -1.10 16 10 C -0.08 -2.50 5.12 -19.86 -0.10 -2.60 16 11 C -0.13 -3.61 9.70 22.27 0.22 -3.39 16 12 C -0.13 -3.15 10.05 22.27 0.22 -2.92 16 13 C -0.14 -3.18 10.05 22.27 0.22 -2.96 16 14 C -0.13 -3.26 10.05 22.27 0.22 -3.03 16 15 C -0.13 -3.78 9.70 22.27 0.22 -3.57 16 16 N -0.48 -27.21 6.78 -178.16 -1.21 -28.42 16 17 C 0.21 12.49 6.56 40.34 0.26 12.75 16 18 C -0.45 -26.09 8.94 23.37 0.21 -25.88 16 19 H 0.08 4.57 7.31 -2.91 -0.02 4.55 16 20 C 0.03 1.38 5.50 85.28 0.47 1.85 16 21 N -0.74 -40.45 11.06 21.84 0.24 -40.21 16 22 Si 0.98 40.00 29.56 68.60 2.03 42.03 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 26 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 27 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 28 H 0.05 1.52 7.69 -2.39 -0.02 1.50 16 29 H 0.14 5.04 6.42 -2.91 -0.02 5.03 16 30 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.14 4.46 7.87 -2.91 -0.02 4.43 16 32 H 0.11 5.25 6.97 -2.91 -0.02 5.23 16 33 H 0.09 2.39 8.08 -2.39 -0.02 2.37 16 34 H 0.09 2.25 7.76 -2.39 -0.02 2.23 16 35 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 37 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 39 H 0.12 3.35 8.06 -2.91 -0.02 3.32 16 40 H 0.28 13.65 8.29 -92.71 -0.77 12.88 16 Total: -1.00 -69.38 345.11 5.79 -63.59 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 1.03 Total: 32.89 kcal Atomic # 6 Polarization: -57.84 SS G_CDS: 4.54 Total: -53.30 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -0.97 Total: -68.63 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.85 Total: -16.59 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -69.38 5.79 -63.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242140482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.509 kcal (2) G-P(sol) polarization free energy of solvation -69.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds