Wall clock time and date at job start Tue Mar 31 2020 06:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35674 * 116.99876 * 2 1 4 4 C 1.37985 * 120.19282 * 0.02562 * 3 2 1 5 5 C 1.39633 * 119.92809 * 179.97438 * 4 3 2 6 6 C 1.48027 * 119.83429 * 179.97438 * 5 4 3 7 7 C 1.39601 * 120.15028 * 0.02562 * 6 5 4 8 8 C 1.37912 * 119.85843 * 179.71415 * 7 6 5 9 9 C 1.38377 * 120.21567 * 0.29610 * 8 7 6 10 10 C 1.38620 * 120.19406 * 359.97438 * 9 8 7 11 11 C 1.37909 * 120.11407 * 359.97018 * 10 9 8 12 12 C 1.51209 * 108.23860 * 179.97438 * 10 9 8 13 13 N 1.48044 * 105.66818 * 17.54945 * 12 10 9 14 14 C 1.48029 * 103.91261 * 332.31558 * 13 12 10 15 15 C 1.40068 * 120.32425 * 0.25562 * 5 4 3 16 16 C 1.36119 * 120.39645 * 359.48175 * 15 5 4 17 17 C 1.40910 * 120.05741 * 0.51602 * 16 15 5 18 18 C 1.40834 * 120.16206 * 179.76656 * 17 16 15 19 19 H 1.07992 * 120.00344 * 154.20620 * 18 17 16 20 20 C 1.40012 * 119.99580 * 334.20624 * 18 17 16 21 21 N 1.30837 * 120.00036 * 343.30327 * 20 18 17 22 22 Si 1.86802 * 119.99889 * 163.30811 * 20 18 17 23 23 H 1.48502 * 109.46972 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47131 * 119.99661 * 22 20 18 25 25 H 1.48501 * 109.47024 * 239.99862 * 22 20 18 26 26 H 1.09003 * 109.47053 * 300.00040 * 1 2 3 27 27 H 1.09000 * 109.47574 * 60.00052 * 1 2 3 28 28 H 1.09003 * 109.47234 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.03742 * 359.95777 * 4 3 2 30 30 H 1.07997 * 120.07122 * 359.97438 * 7 6 5 31 31 H 1.07994 * 119.89224 * 180.27686 * 8 7 6 32 32 H 1.07999 * 120.03750 * 180.02562 * 11 10 9 33 33 H 1.08996 * 110.20578 * 136.59654 * 12 10 9 34 34 H 1.08996 * 110.21279 * 258.42083 * 12 10 9 35 35 H 1.00903 * 110.99912 * 212.93211 * 13 12 10 36 36 H 1.09001 * 110.20391 * 268.63339 * 14 13 12 37 37 H 1.09002 * 110.20916 * 146.73401 * 14 13 12 38 38 H 1.07997 * 119.79962 * 179.72042 * 15 5 4 39 39 H 1.08001 * 119.96721 * 180.23499 * 16 15 5 40 40 H 0.97003 * 119.99716 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2973 2.3686 0.0005 5 6 1.9369 3.6098 0.0011 6 6 1.1328 4.8527 0.0011 7 6 -0.2616 4.7856 0.0011 8 6 -1.0048 5.9473 0.0070 9 6 -0.3729 7.1784 0.0068 10 6 1.0114 7.2514 0.0012 11 6 1.7652 6.0966 -0.0037 12 6 1.4083 8.7105 0.0018 13 7 0.2036 9.4524 0.4378 14 6 -0.9202 8.5883 0.0116 15 6 3.3356 3.6846 -0.0043 16 6 4.0860 2.5490 0.0005 17 6 3.4577 1.2878 0.0000 18 6 4.2320 0.1114 -0.0001 19 1 3.8254 -0.8027 0.4065 20 6 5.5290 0.1271 -0.5272 21 7 5.9081 1.1105 -1.3026 22 14 6.7180 -1.2559 -0.1236 23 1 6.0502 -2.2386 0.7672 24 1 7.1377 -1.9298 -1.3785 25 1 7.9116 -0.6983 0.5619 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.2186 2.3164 0.0003 30 1 -0.7572 3.8261 0.0007 31 1 -2.0836 5.8961 0.0116 32 1 2.8436 6.1550 -0.0077 33 1 2.2271 8.8776 0.7015 34 1 1.7011 9.0215 -1.0010 35 1 0.1543 10.3561 -0.0083 36 1 -1.2510 8.8670 -0.9890 37 1 -1.7463 8.6690 0.7181 38 1 3.8214 4.6491 -0.0084 39 1 5.1640 2.6148 0.0001 40 1 6.8066 1.1211 -1.6681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242675010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:32 Heat of formation + Delta-G solvation = -0.588075 kcal Electronic energy + Delta-G solvation = -22460.768438 eV Core-core repulsion = 19204.439844 eV Total energy + Delta-G solvation = -3256.328593 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20869 -40.37249 -38.24604 -37.10788 -35.47300 -32.81029 -32.13496 -30.77272 -30.13674 -28.55067 -28.08042 -26.56408 -24.53613 -23.32083 -22.54212 -21.66710 -21.16777 -19.44424 -18.23871 -17.71964 -17.13267 -16.75509 -16.45134 -16.25944 -16.05707 -15.76476 -15.54516 -14.80946 -14.64639 -14.52775 -14.12781 -14.00949 -13.75706 -13.64142 -13.34888 -13.21294 -12.95600 -12.85404 -12.71179 -12.53054 -12.23247 -12.03865 -11.97678 -11.70183 -11.41162 -11.27875 -11.11652 -10.22709 -9.85434 -9.41624 -9.03411 -8.77682 -8.55948 -6.22195 0.00229 0.48477 1.10483 1.11378 1.38143 1.52639 1.54339 2.20001 2.58269 2.87868 3.00672 3.31816 3.48407 3.64582 3.69044 4.02240 4.11389 4.24525 4.42808 4.45289 4.47130 4.47489 4.49608 4.54005 4.62859 4.68543 4.73483 4.83685 4.94724 5.07990 5.16456 5.18051 5.33712 5.36057 5.39914 5.47514 5.60234 5.75874 5.79736 5.89300 6.12321 6.20966 6.22357 6.39270 6.46923 6.71987 6.82364 7.18046 8.27093 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.022464 B = 0.003702 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.157026 B = 7561.416565 C = 8707.053531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C -0.004 4.004 4 C -0.156 4.156 5 C -0.164 4.164 6 C -0.009 4.009 7 C -0.144 4.144 8 C -0.090 4.090 9 C -0.144 4.144 10 C -0.111 4.111 11 C -0.129 4.129 12 C 0.084 3.916 13 N -0.666 5.666 14 C 0.089 3.911 15 C -0.107 4.107 16 C -0.170 4.170 17 C 0.070 3.930 18 C -0.469 4.469 19 H 0.074 0.926 20 C 0.033 3.967 21 N -0.817 5.817 22 Si 0.985 3.015 23 H -0.260 1.260 24 H -0.264 1.264 25 H -0.260 1.260 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.113 0.887 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.359 0.641 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.852 10.230 0.504 14.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.253 6.253 3 C -0.048 4.048 4 C -0.175 4.175 5 C -0.166 4.166 6 C -0.009 4.009 7 C -0.161 4.161 8 C -0.108 4.108 9 C -0.144 4.144 10 C -0.111 4.111 11 C -0.147 4.147 12 C -0.045 4.045 13 N -0.296 5.296 14 C -0.039 4.039 15 C -0.125 4.125 16 C -0.190 4.190 17 C 0.067 3.933 18 C -0.498 4.498 19 H 0.092 0.908 20 C -0.182 4.182 21 N -0.442 5.442 22 Si 0.805 3.195 23 H -0.184 1.184 24 H -0.189 1.189 25 H -0.185 1.185 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.131 0.869 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.165 0.835 32 H 0.136 0.864 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.177 0.823 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.561 9.980 1.080 13.863 hybrid contribution 0.635 -0.607 -1.014 1.341 sum -8.926 9.374 0.066 12.944 Atomic orbital electron populations 1.23101 0.78641 1.04340 1.00919 1.85916 1.21480 1.27594 1.90351 1.19243 0.92197 0.83961 1.09435 1.20949 0.98761 0.91309 1.06469 1.18156 0.92380 0.91408 1.14619 1.18859 0.93440 0.91847 0.96784 1.21263 0.92683 0.98989 1.03212 1.20581 1.00653 0.90160 0.99394 1.20900 0.94401 0.95842 1.03284 1.20703 0.94991 0.95297 1.00150 1.20585 0.99808 0.90768 1.03588 1.21380 0.94813 0.87876 1.00447 1.63449 1.01278 1.05667 1.59190 1.21373 0.94805 0.87101 1.00652 1.20681 0.93210 0.97479 1.01149 1.20729 0.99290 0.91212 1.07762 1.17532 0.88911 0.94623 0.92227 1.19677 0.98608 0.96786 1.34726 0.90765 1.26808 0.99812 0.99709 0.91911 1.69863 1.20309 1.32101 1.21933 0.85118 0.77368 0.77734 0.79280 1.18404 1.18873 1.18465 0.92924 0.93202 0.86855 0.85293 0.85351 0.83486 0.86407 0.89208 0.91072 0.82330 0.90965 0.88423 0.87108 0.87094 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 9.81 113.37 1.11 1.92 16 2 O -0.34 -15.73 9.78 -89.91 -0.88 -16.61 16 3 C 0.00 -0.20 6.71 23.01 0.15 -0.05 16 4 C -0.16 -7.01 8.40 22.55 0.19 -6.82 16 5 C -0.16 -7.39 5.89 -19.90 -0.12 -7.51 16 6 C -0.01 -0.35 5.88 -20.04 -0.12 -0.47 16 7 C -0.14 -4.69 9.42 22.52 0.21 -4.47 16 8 C -0.09 -2.43 10.03 22.23 0.22 -2.21 16 9 C -0.14 -3.86 6.27 -19.57 -0.12 -3.98 16 10 C -0.11 -3.29 6.25 -19.69 -0.12 -3.42 16 11 C -0.13 -4.53 9.42 22.51 0.21 -4.32 16 12 C 0.08 1.88 7.45 85.50 0.64 2.52 16 13 N -0.67 -12.91 7.71 -514.63 -3.97 -16.88 16 14 C 0.09 1.73 7.45 85.51 0.64 2.37 16 15 C -0.11 -5.10 9.35 22.22 0.21 -4.90 16 16 C -0.17 -9.08 8.61 22.43 0.19 -8.89 16 17 C 0.07 3.88 5.57 -21.19 -0.12 3.76 16 18 C -0.47 -26.00 8.69 23.34 0.20 -25.80 16 19 H 0.07 4.11 7.65 -2.91 -0.02 4.09 16 20 C 0.03 1.68 5.15 85.27 0.44 2.12 16 21 N -0.82 -42.50 10.96 21.84 0.24 -42.26 16 22 Si 0.98 38.47 29.59 68.60 2.03 40.50 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 26 H 0.05 1.56 7.66 -2.39 -0.02 1.54 16 27 H 0.05 1.51 7.66 -2.39 -0.02 1.49 16 28 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.13 4.89 4.41 -2.91 -0.01 4.88 16 30 H 0.13 3.86 6.18 -2.91 -0.02 3.84 16 31 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.12 4.08 6.17 -2.91 -0.02 4.06 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.36 4.75 8.92 -89.69 -0.80 3.95 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.11 4.74 6.16 -2.91 -0.02 4.72 16 39 H 0.11 6.09 6.19 -2.91 -0.02 6.07 16 40 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 Total: -1.00 -65.05 327.81 1.53 -63.52 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.29 Total: 31.87 kcal Atomic # 6 Polarization: -63.96 SS G_CDS: 3.82 Total: -60.14 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -3.73 Total: -59.14 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.88 Total: -16.61 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -65.05 1.53 -63.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242675010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.933 kcal (2) G-P(sol) polarization free energy of solvation -65.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds