Wall clock time and date at job start Tue Mar 31 2020 06:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35607 * 117.00393 * 2 1 4 4 C 1.39154 * 119.88028 * 0.02562 * 3 2 1 5 5 C 1.36410 * 120.43744 * 179.97438 * 4 3 2 6 6 C 1.40903 * 120.19180 * 0.02562 * 5 4 3 7 7 C 1.41238 * 120.12286 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00050 * 24.49078 * 7 6 5 9 9 C 1.39871 * 120.00220 * 204.49064 * 7 6 5 10 10 N 1.30892 * 119.99881 * 17.81476 * 9 7 6 11 11 Si 1.86794 * 119.99852 * 197.81470 * 9 7 6 12 12 H 1.48504 * 109.47398 * 90.00236 * 11 9 7 13 13 H 1.48509 * 109.47062 * 209.99916 * 11 9 7 14 14 H 1.48499 * 109.47544 * 329.99757 * 11 9 7 15 15 C 1.40620 * 119.76238 * 359.72651 * 6 5 4 16 16 C 1.38597 * 119.56566 * 0.50358 * 15 6 5 17 17 C 1.48344 * 120.09625 * 179.79533 * 16 15 6 18 18 C 1.39387 * 120.12731 * 130.03826 * 17 16 15 19 19 C 1.37987 * 119.87025 * 180.33004 * 18 17 16 20 20 C 1.38308 * 120.19286 * 359.63606 * 19 18 17 21 21 C 1.38570 * 120.16639 * 0.03033 * 20 19 18 22 22 C 1.37962 * 120.09010 * 0.02562 * 21 20 19 23 23 C 1.51214 * 108.23695 * 180.02562 * 21 20 19 24 24 N 1.48049 * 105.67445 * 342.47502 * 23 21 20 25 25 C 1.48035 * 103.89948 * 27.66188 * 24 23 21 26 26 H 1.08998 * 109.47432 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46812 * 300.00136 * 1 2 3 28 28 H 1.09004 * 109.47221 * 59.99677 * 1 2 3 29 29 H 1.08005 * 119.78003 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.90273 * 180.02562 * 5 4 3 31 31 H 0.96993 * 120.00180 * 179.97438 * 10 9 7 32 32 H 1.07991 * 120.21802 * 180.30000 * 15 6 5 33 33 H 1.07992 * 120.06590 * 359.97438 * 18 17 16 34 34 H 1.08000 * 119.90053 * 179.66165 * 19 18 17 35 35 H 1.08004 * 120.03149 * 179.97438 * 22 21 20 36 36 H 1.08994 * 110.20451 * 101.52758 * 23 21 20 37 37 H 1.09000 * 110.20596 * 223.42479 * 23 21 20 38 38 H 1.00904 * 110.99452 * 147.02643 * 24 23 21 39 39 H 1.09001 * 110.20553 * 213.27863 * 25 24 23 40 40 H 1.08998 * 110.27427 * 91.42001 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2845 2.3737 0.0005 5 6 1.8920 3.5951 0.0011 6 6 3.2980 3.6871 0.0005 7 6 3.9255 4.9524 0.0005 8 1 3.4030 5.8143 0.3887 9 6 5.2236 5.0894 -0.5021 10 7 5.7267 4.1619 -1.2767 11 14 6.2391 6.5958 -0.0678 12 1 7.0137 6.3304 1.1712 13 1 7.1744 6.8999 -1.1806 14 1 5.3370 7.7548 0.1511 15 6 4.0743 2.5146 0.0053 16 6 3.4467 1.2789 -0.0002 17 6 4.2541 0.0345 0.0002 18 6 3.9807 -0.9767 0.9197 19 6 4.7395 -2.1292 0.9197 20 6 5.7652 -2.2867 0.0054 21 6 6.0368 -1.2874 -0.9153 22 6 5.2847 -0.1308 -0.9229 23 6 7.1975 -1.7375 -1.7737 24 7 7.8422 -2.8417 -1.0274 25 6 6.7406 -3.4192 -0.2247 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.2062 2.3109 0.0005 30 1 1.2935 4.4941 0.0019 31 1 6.6267 4.2570 -1.6256 32 1 5.1524 2.5766 0.0098 33 1 3.1802 -0.8561 1.6345 34 1 4.5315 -2.9107 1.6356 35 1 5.4974 0.6476 -1.6407 36 1 6.8363 -2.0951 -2.7378 37 1 7.9014 -0.9173 -1.9152 38 1 8.2278 -3.5279 -1.6587 39 1 7.1218 -3.7871 0.7279 40 1 6.2568 -4.2272 -0.7734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242675157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:16 Heat of formation + Delta-G solvation = 15.198894 kcal Electronic energy + Delta-G solvation = -22919.426603 eV Core-core repulsion = 19663.782584 eV Total energy + Delta-G solvation = -3255.644019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.89913 -38.78394 -36.54650 -35.83293 -33.36190 -31.62224 -30.60772 -29.13686 -28.45859 -27.17195 -26.58717 -24.69135 -23.36882 -21.48102 -21.10587 -20.55957 -19.57536 -17.29099 -16.88675 -16.42879 -15.42638 -15.24224 -15.09140 -14.96461 -14.69968 -14.52969 -13.45982 -13.36812 -13.33431 -13.08758 -12.73745 -12.66598 -12.07328 -12.02468 -11.93638 -11.88565 -11.50347 -11.25695 -11.09265 -11.06587 -10.78120 -10.67165 -10.36302 -10.04260 -9.84128 -9.46368 -9.08142 -8.94397 -8.38300 -8.06491 -7.36418 -7.01319 -6.72732 -4.29379 1.66773 1.89679 2.74383 2.85643 3.08604 3.11358 3.18330 3.93971 4.20672 4.29179 4.30818 4.58216 4.74105 4.80614 5.36114 5.40229 5.49691 5.54373 5.60760 5.63961 5.66492 5.69914 5.83755 5.86143 6.00585 6.07429 6.14410 6.32441 6.46300 6.53716 6.54845 6.86347 6.90133 7.01994 7.03822 7.10251 7.21762 7.24546 7.34397 7.45913 7.51721 7.72281 7.93567 8.13406 8.39817 8.58233 8.85633 8.91059 10.19320 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.005709 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.311110 B = 4903.287601 C = 6957.712103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.324 6.324 3 C 0.012 3.988 4 C -0.170 4.170 5 C -0.187 4.187 6 C 0.086 3.914 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.797 5.797 11 Si 0.907 3.093 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.263 1.263 15 C -0.114 4.114 16 C -0.067 4.067 17 C 0.002 3.998 18 C -0.096 4.096 19 C -0.106 4.106 20 C -0.127 4.127 21 C -0.110 4.110 22 C -0.086 4.086 23 C 0.083 3.917 24 N -0.661 5.661 25 C 0.086 3.914 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.281 0.719 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.340 0.660 39 H 0.084 0.916 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -10.624 0.286 10.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.239 6.239 3 C -0.032 4.032 4 C -0.188 4.188 5 C -0.207 4.207 6 C 0.084 3.916 7 C -0.493 4.493 8 H 0.095 0.905 9 C -0.141 4.141 10 N -0.423 5.423 11 Si 0.731 3.269 12 H -0.193 1.193 13 H -0.204 1.204 14 H -0.187 1.187 15 C -0.133 4.133 16 C -0.068 4.068 17 C 0.002 3.998 18 C -0.114 4.114 19 C -0.124 4.124 20 C -0.127 4.127 21 C -0.111 4.111 22 C -0.105 4.105 23 C -0.046 4.046 24 N -0.288 5.288 25 C -0.043 4.043 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.155 0.845 39 H 0.102 0.898 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.266 -10.461 0.665 10.485 hybrid contribution -0.439 0.451 -0.631 0.891 sum -0.172 -10.009 0.034 10.011 Atomic orbital electron populations 1.22718 0.81158 1.01723 1.00298 1.85879 1.18884 1.28271 1.90893 1.18508 0.90725 0.83067 1.10891 1.20356 0.97434 0.92844 1.08206 1.20635 0.94857 0.95139 1.10062 1.17502 0.90558 0.93336 0.90252 1.19445 0.98473 0.94948 1.36422 0.90460 1.25848 0.97939 0.97740 0.92579 1.69804 1.16252 1.33635 1.22635 0.86334 0.79716 0.81746 0.79062 1.19290 1.20357 1.18723 1.21351 1.00021 0.89162 1.02751 1.17880 0.88775 0.92196 1.07963 1.18772 0.93743 0.93530 0.93777 1.21107 0.98822 0.92681 0.98765 1.20261 0.95641 0.97924 0.98580 1.20394 0.97786 0.96472 0.98081 1.20312 0.97523 0.95288 0.97945 1.20668 0.94729 0.96041 0.99020 1.21351 0.93798 0.95086 0.94379 1.63484 1.28783 1.11711 1.24861 1.21303 0.89874 0.94313 0.98838 0.90052 0.93937 0.93975 0.88409 0.88582 0.90853 0.85187 0.85844 0.86777 0.85439 0.92857 0.89303 0.84485 0.89817 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.55 16 2 O -0.32 -6.46 8.79 -18.52 -0.16 -6.63 16 3 C 0.01 0.26 6.62 -38.44 -0.25 0.01 16 4 C -0.17 -3.73 8.95 -39.90 -0.36 -4.09 16 5 C -0.19 -4.47 9.72 -39.23 -0.38 -4.85 16 6 C 0.09 2.23 5.57 -106.85 -0.60 1.64 16 7 C -0.46 -12.01 9.04 -37.83 -0.34 -12.36 16 8 H 0.08 1.93 7.91 -52.48 -0.41 1.52 16 9 C 0.08 1.87 5.13 -17.34 -0.09 1.79 16 10 N -0.80 -20.12 10.96 55.54 0.61 -19.51 16 11 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 13 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 14 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 15 C -0.11 -2.89 8.14 -38.55 -0.31 -3.20 16 16 C -0.07 -1.58 5.48 -104.80 -0.57 -2.16 16 17 C 0.00 0.04 5.27 -104.90 -0.55 -0.51 16 18 C -0.10 -1.80 8.77 -39.25 -0.34 -2.14 16 19 C -0.11 -1.73 10.03 -39.65 -0.40 -2.12 16 20 C -0.13 -2.06 6.26 -104.22 -0.65 -2.71 16 21 C -0.11 -1.92 6.25 -104.35 -0.65 -2.57 16 22 C -0.09 -1.72 9.51 -39.27 -0.37 -2.10 16 23 C 0.08 1.17 7.45 -4.09 -0.03 1.14 16 24 N -0.66 -8.41 7.72 -114.01 -0.88 -9.29 16 25 C 0.09 1.10 7.45 -4.09 -0.03 1.07 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.60 7.65 -51.93 -0.40 0.21 16 28 H 0.04 0.62 7.65 -51.93 -0.40 0.22 16 29 H 0.10 1.86 6.26 -52.48 -0.33 1.53 16 30 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 32 H 0.13 3.44 6.15 -52.49 -0.32 3.11 16 33 H 0.12 2.26 7.66 -52.49 -0.40 1.86 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.13 2.65 8.04 -52.48 -0.42 2.22 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.34 3.28 8.92 -39.29 -0.35 2.93 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -28.23 333.20 -10.52 -38.75 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.13 Total: 9.76 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: -4.95 Total: -31.63 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: -0.27 Total: -28.80 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.16 Total: -6.63 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.23 -10.52 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242675157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.949 kcal (2) G-P(sol) polarization free energy of solvation -28.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds