Wall clock time and date at job start Tue Mar 31 2020 06:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35607 * 117.00393 * 2 1 4 4 C 1.39154 * 119.88028 * 0.02562 * 3 2 1 5 5 C 1.36410 * 120.43744 * 179.97438 * 4 3 2 6 6 C 1.40903 * 120.19180 * 0.02562 * 5 4 3 7 7 C 1.41238 * 120.12286 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00050 * 24.49078 * 7 6 5 9 9 C 1.39871 * 120.00220 * 204.49064 * 7 6 5 10 10 N 1.30892 * 119.99881 * 17.81476 * 9 7 6 11 11 Si 1.86794 * 119.99852 * 197.81470 * 9 7 6 12 12 H 1.48504 * 109.47398 * 90.00236 * 11 9 7 13 13 H 1.48509 * 109.47062 * 209.99916 * 11 9 7 14 14 H 1.48499 * 109.47544 * 329.99757 * 11 9 7 15 15 C 1.40620 * 119.76238 * 359.72651 * 6 5 4 16 16 C 1.38597 * 119.56566 * 0.50358 * 15 6 5 17 17 C 1.48344 * 120.09625 * 179.79533 * 16 15 6 18 18 C 1.39387 * 120.12731 * 130.03826 * 17 16 15 19 19 C 1.37987 * 119.87025 * 180.33004 * 18 17 16 20 20 C 1.38308 * 120.19286 * 359.63606 * 19 18 17 21 21 C 1.38570 * 120.16639 * 0.03033 * 20 19 18 22 22 C 1.37962 * 120.09010 * 0.02562 * 21 20 19 23 23 C 1.51214 * 108.23695 * 180.02562 * 21 20 19 24 24 N 1.48049 * 105.67445 * 342.47502 * 23 21 20 25 25 C 1.48035 * 103.89948 * 27.66188 * 24 23 21 26 26 H 1.08998 * 109.47432 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46812 * 300.00136 * 1 2 3 28 28 H 1.09004 * 109.47221 * 59.99677 * 1 2 3 29 29 H 1.08005 * 119.78003 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.90273 * 180.02562 * 5 4 3 31 31 H 0.96993 * 120.00180 * 179.97438 * 10 9 7 32 32 H 1.07991 * 120.21802 * 180.30000 * 15 6 5 33 33 H 1.07992 * 120.06590 * 359.97438 * 18 17 16 34 34 H 1.08000 * 119.90053 * 179.66165 * 19 18 17 35 35 H 1.08004 * 120.03149 * 179.97438 * 22 21 20 36 36 H 1.08994 * 110.20451 * 101.52758 * 23 21 20 37 37 H 1.09000 * 110.20596 * 223.42479 * 23 21 20 38 38 H 1.00904 * 110.99452 * 147.02643 * 24 23 21 39 39 H 1.09001 * 110.20553 * 213.27863 * 25 24 23 40 40 H 1.08998 * 110.27427 * 91.42001 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2845 2.3737 0.0005 5 6 1.8920 3.5951 0.0011 6 6 3.2980 3.6871 0.0005 7 6 3.9255 4.9524 0.0005 8 1 3.4030 5.8143 0.3887 9 6 5.2236 5.0894 -0.5021 10 7 5.7267 4.1619 -1.2767 11 14 6.2391 6.5958 -0.0678 12 1 7.0137 6.3304 1.1712 13 1 7.1744 6.8999 -1.1806 14 1 5.3370 7.7548 0.1511 15 6 4.0743 2.5146 0.0053 16 6 3.4467 1.2789 -0.0002 17 6 4.2541 0.0345 0.0002 18 6 3.9807 -0.9767 0.9197 19 6 4.7395 -2.1292 0.9197 20 6 5.7652 -2.2867 0.0054 21 6 6.0368 -1.2874 -0.9153 22 6 5.2847 -0.1308 -0.9229 23 6 7.1975 -1.7375 -1.7737 24 7 7.8422 -2.8417 -1.0274 25 6 6.7406 -3.4192 -0.2247 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.2062 2.3109 0.0005 30 1 1.2935 4.4941 0.0019 31 1 6.6267 4.2570 -1.6256 32 1 5.1524 2.5766 0.0098 33 1 3.1802 -0.8561 1.6345 34 1 4.5315 -2.9107 1.6356 35 1 5.4974 0.6476 -1.6407 36 1 6.8363 -2.0951 -2.7378 37 1 7.9014 -0.9173 -1.9152 38 1 8.2278 -3.5279 -1.6587 39 1 7.1218 -3.7871 0.7279 40 1 6.2568 -4.2272 -0.7734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242675157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:15 Heat of formation + Delta-G solvation = -0.775652 kcal Electronic energy + Delta-G solvation = -22920.119312 eV Core-core repulsion = 19663.782584 eV Total energy + Delta-G solvation = -3256.336727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26205 -40.35588 -38.16380 -37.22383 -35.17645 -33.13262 -31.98504 -30.96674 -29.86917 -28.47439 -27.98297 -26.45353 -24.75313 -22.98803 -22.59888 -22.06082 -21.16201 -19.07126 -18.52981 -17.61413 -17.16013 -16.57668 -16.49001 -16.36405 -16.17075 -16.02892 -15.05045 -14.85769 -14.60706 -14.53567 -14.27265 -13.96963 -13.77805 -13.49572 -13.35847 -13.09868 -13.04835 -12.84188 -12.72165 -12.43156 -12.35025 -12.34126 -11.81092 -11.68231 -11.55914 -11.19507 -10.88307 -10.18738 -9.82289 -9.43685 -9.06476 -8.77579 -8.52207 -6.23004 0.18496 0.48387 0.98450 1.06579 1.38411 1.50862 1.51414 2.21802 2.65323 2.77686 2.91820 3.30075 3.47300 3.61577 3.69080 4.00709 4.13900 4.28124 4.40190 4.44652 4.49139 4.49654 4.53833 4.58294 4.64539 4.72368 4.77509 4.88767 5.04177 5.07835 5.13897 5.23151 5.27458 5.37260 5.40034 5.51348 5.62955 5.73842 5.76581 5.86741 6.06005 6.11655 6.25665 6.39963 6.56221 6.80255 6.94983 7.08014 8.36878 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.005709 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.311110 B = 4903.287601 C = 6957.712103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.333 6.333 3 C 0.017 3.983 4 C -0.169 4.169 5 C -0.200 4.200 6 C 0.054 3.946 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.035 3.965 10 N -0.828 5.828 11 Si 0.978 3.022 12 H -0.266 1.266 13 H -0.269 1.269 14 H -0.257 1.257 15 C -0.136 4.136 16 C -0.077 4.077 17 C -0.030 4.030 18 C -0.102 4.102 19 C -0.099 4.099 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.107 4.107 23 C 0.085 3.915 24 N -0.664 5.664 25 C 0.089 3.911 26 H 0.116 0.884 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.132 0.868 30 H 0.106 0.894 31 H 0.286 0.714 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.152 0.848 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.360 0.640 39 H 0.102 0.898 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 -13.096 0.742 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.248 6.248 3 C -0.027 4.027 4 C -0.188 4.188 5 C -0.220 4.220 6 C 0.052 3.948 7 C -0.529 4.529 8 H 0.094 0.906 9 C -0.179 4.179 10 N -0.455 5.455 11 Si 0.799 3.201 12 H -0.191 1.191 13 H -0.194 1.194 14 H -0.181 1.181 15 C -0.155 4.155 16 C -0.078 4.078 17 C -0.030 4.030 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.044 4.044 24 N -0.294 5.294 25 C -0.039 4.039 26 H 0.134 0.866 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.150 0.850 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.142 0.858 34 H 0.170 0.830 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.178 0.822 39 H 0.120 0.880 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.207 -12.958 1.111 13.007 hybrid contribution -0.532 1.001 -0.785 1.379 sum -0.325 -11.957 0.326 11.966 Atomic orbital electron populations 1.23097 0.78363 1.04377 1.01062 1.85870 1.21694 1.26757 1.90517 1.18638 0.90661 0.84238 1.09156 1.20672 0.99176 0.91955 1.06983 1.20844 0.94295 0.96501 1.10348 1.17853 0.91852 0.93757 0.91336 1.19677 0.99963 0.95086 1.38201 0.90607 1.26665 0.98519 1.00767 0.91910 1.69883 1.16744 1.35455 1.23377 0.85266 0.78009 0.78013 0.78818 1.19062 1.19377 1.18091 1.21198 0.99079 0.90261 1.04973 1.18181 0.90060 0.92662 1.06871 1.18800 0.94773 0.93635 0.95764 1.21161 0.99495 0.93067 0.98307 1.20611 0.94638 0.97623 0.98835 1.20944 0.97715 0.97141 0.96684 1.20657 0.97997 0.94555 0.98960 1.20544 0.95882 0.96895 0.99214 1.21341 0.92582 0.95685 0.94770 1.63451 1.28647 1.12022 1.25329 1.21411 0.89053 0.93342 1.00119 0.86611 0.92784 0.93439 0.85045 0.87581 0.90383 0.87402 0.85765 0.83029 0.88013 0.91011 0.89843 0.82205 0.88039 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.80 113.37 1.11 1.83 16 2 O -0.33 -12.94 8.79 -89.17 -0.78 -13.72 16 3 C 0.02 0.79 6.62 23.01 0.15 0.94 16 4 C -0.17 -7.45 8.95 22.06 0.20 -7.26 16 5 C -0.20 -9.86 9.72 22.50 0.22 -9.65 16 6 C 0.05 2.97 5.57 -21.31 -0.12 2.86 16 7 C -0.50 -27.33 9.04 23.40 0.21 -27.12 16 8 H 0.08 3.99 7.91 -2.91 -0.02 3.97 16 9 C 0.04 1.83 5.13 85.23 0.44 2.26 16 10 N -0.83 -44.27 10.96 21.82 0.24 -44.03 16 11 Si 0.98 39.30 29.59 68.60 2.03 41.33 16 12 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 13 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 14 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 15 C -0.14 -7.39 8.14 22.94 0.19 -7.20 16 16 C -0.08 -3.79 5.48 -19.98 -0.11 -3.90 16 17 C -0.03 -1.30 5.27 -20.05 -0.11 -1.41 16 18 C -0.10 -3.81 8.77 22.49 0.20 -3.61 16 19 C -0.10 -3.00 10.03 22.23 0.22 -2.78 16 20 C -0.12 -3.74 6.26 -19.60 -0.12 -3.86 16 21 C -0.12 -4.18 6.25 -19.69 -0.12 -4.31 16 22 C -0.11 -4.49 9.51 22.47 0.21 -4.28 16 23 C 0.09 2.29 7.45 85.50 0.64 2.93 16 24 N -0.66 -14.81 7.72 -514.62 -3.97 -18.78 16 25 C 0.09 1.92 7.45 85.51 0.64 2.56 16 26 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.05 1.38 7.65 -2.39 -0.02 1.36 16 28 H 0.05 1.27 7.65 -2.38 -0.02 1.25 16 29 H 0.13 4.77 6.26 -2.91 -0.02 4.75 16 30 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 31 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 32 H 0.11 6.23 6.15 -2.91 -0.02 6.21 16 33 H 0.12 4.49 7.66 -2.91 -0.02 4.47 16 34 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.10 4.66 8.04 -2.91 -0.02 4.63 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.36 5.61 8.92 -89.69 -0.80 4.81 16 39 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -65.09 333.20 1.63 -63.46 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.27 Total: 33.73 kcal Atomic # 6 Polarization: -65.84 SS G_CDS: 3.84 Total: -61.99 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -3.73 Total: -62.82 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.78 Total: -13.72 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -65.09 1.63 -63.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242675157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.688 kcal (2) G-P(sol) polarization free energy of solvation -65.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds