Wall clock time and date at job start Tue Mar 31 2020 06:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35605 * 116.99468 * 2 1 4 4 C 1.38519 * 120.08606 * 359.97438 * 3 2 1 5 5 C 1.38027 * 120.30729 * 179.76270 * 4 3 2 6 6 C 1.39923 * 120.47511 * 0.51407 * 5 4 3 7 7 C 1.48371 * 119.92392 * 179.75556 * 6 5 4 8 8 C 1.39378 * 120.12993 * 174.32688 * 7 6 5 9 9 C 1.37971 * 119.87556 * 179.70218 * 8 7 6 10 10 C 1.38311 * 120.19530 * 0.30714 * 9 8 7 11 11 C 1.38558 * 120.16311 * 359.97438 * 10 9 8 12 12 C 1.37977 * 120.08804 * 359.94860 * 11 10 9 13 13 C 1.51205 * 108.24440 * 179.97438 * 11 10 9 14 14 N 1.48043 * 105.67139 * 17.53051 * 13 11 10 15 15 C 1.48035 * 103.90243 * 332.34097 * 14 13 11 16 16 C 1.38619 * 120.15755 * 359.48540 * 6 5 4 17 17 C 1.40530 * 119.69022 * 0.25041 * 16 6 5 18 18 C 1.41180 * 120.23125 * 180.02562 * 17 16 6 19 19 H 1.08008 * 119.99482 * 151.25367 * 18 17 16 20 20 C 1.39907 * 120.00339 * 331.26266 * 18 17 16 21 21 N 1.30882 * 119.99772 * 161.30024 * 20 18 17 22 22 Si 1.86796 * 119.99856 * 341.29693 * 20 18 17 23 23 H 1.48494 * 109.47152 * 90.58070 * 22 20 18 24 24 H 1.48500 * 109.47306 * 210.58088 * 22 20 18 25 25 H 1.48499 * 109.47267 * 330.57865 * 22 20 18 26 26 H 1.09007 * 109.46742 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47691 * 299.99656 * 1 2 3 28 28 H 1.08998 * 109.47083 * 60.00044 * 1 2 3 29 29 H 1.08004 * 119.84481 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.76341 * 180.27217 * 5 4 3 31 31 H 1.08003 * 120.05856 * 359.97438 * 8 7 6 32 32 H 1.08005 * 119.90157 * 180.28079 * 9 8 7 33 33 H 1.07999 * 120.02966 * 180.02562 * 12 11 10 34 34 H 1.08996 * 110.20591 * 136.58600 * 13 11 10 35 35 H 1.09000 * 110.20539 * 258.40269 * 13 11 10 36 36 H 1.00901 * 110.99770 * 212.96490 * 14 13 11 37 37 H 1.09006 * 110.20357 * 268.60960 * 15 14 13 38 38 H 1.09000 * 110.20748 * 146.72178 * 15 14 13 39 39 H 1.08004 * 120.16104 * 180.27664 * 16 6 5 40 40 H 0.97005 * 119.99409 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2918 2.3711 -0.0005 5 6 1.9135 3.6034 0.0044 6 6 3.3098 3.6938 -0.0008 7 6 3.9654 5.0248 -0.0009 8 6 5.3511 5.1222 0.1131 9 6 5.9557 6.3623 0.1062 10 6 5.1903 7.5088 -0.0070 11 6 3.8120 7.4179 -0.1148 12 6 3.1978 6.1823 -0.1105 13 6 3.2521 8.8184 -0.2220 14 7 4.3965 9.6788 -0.5984 15 6 5.5715 8.9719 -0.0408 16 6 4.0822 2.5427 -0.0003 17 6 3.4563 1.2845 0.0002 18 6 4.2318 0.1047 0.0014 19 1 3.8429 -0.7967 0.4516 20 6 5.5041 0.1033 -0.5806 21 7 6.3623 -0.8365 -0.2752 22 14 5.9779 1.4428 -1.7933 23 1 6.5994 2.5757 -1.0617 24 1 6.9468 0.8986 -2.7783 25 1 4.7641 1.9189 -2.5041 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2133 2.3132 -0.0005 30 1 1.3180 4.5043 0.0084 31 1 5.9507 4.2284 0.2022 32 1 7.0298 6.4381 0.1900 33 1 2.1234 6.1125 -0.1949 34 1 2.4819 8.8579 -0.9922 35 1 2.8415 9.1341 0.7370 36 1 4.3041 10.5996 -0.1965 37 1 5.7825 9.3293 0.9672 38 1 6.4398 9.1201 -0.6828 39 1 5.1600 2.6124 0.0002 40 1 7.2443 -0.8376 -0.6790 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242675464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:36 Heat of formation + Delta-G solvation = 20.031259 kcal Electronic energy + Delta-G solvation = -22742.875078 eV Core-core repulsion = 19487.440606 eV Total energy + Delta-G solvation = -3255.434472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.12960 -38.91347 -37.07718 -35.56448 -33.67983 -31.62020 -30.72924 -30.51419 -28.22182 -27.33739 -26.53161 -25.00031 -23.43229 -22.00164 -21.41034 -20.65525 -19.43524 -17.53843 -17.14992 -16.70015 -15.61936 -15.45451 -15.28084 -15.00661 -14.82109 -14.47346 -13.72278 -13.63988 -13.56385 -13.21292 -13.04093 -12.68284 -12.53010 -12.31944 -12.19054 -11.92347 -11.72121 -11.47942 -11.18363 -11.01447 -10.73375 -10.70366 -10.46254 -10.27125 -9.80075 -9.64865 -9.17758 -9.11729 -8.62362 -8.27108 -7.79879 -6.95938 -6.87609 -4.40579 1.26518 1.62475 2.50576 2.67612 3.07399 3.19690 3.31321 3.95898 3.99972 4.11037 4.30083 4.49729 4.55318 4.57092 5.12417 5.23710 5.28757 5.32024 5.38907 5.47991 5.57533 5.62552 5.70128 5.73854 5.79579 5.84082 5.95397 6.01209 6.15109 6.26911 6.29865 6.46973 6.61444 6.63773 6.76579 6.81919 6.97652 7.04704 7.13676 7.20296 7.38184 7.49581 7.71349 7.91125 8.17274 8.38056 8.75326 8.77297 10.06917 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.004956 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.974918 B = 5647.878017 C = 7109.806879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.306 6.306 3 C 0.041 3.959 4 C -0.174 4.174 5 C -0.191 4.191 6 C -0.046 4.046 7 C -0.008 4.008 8 C -0.119 4.119 9 C -0.095 4.095 10 C -0.127 4.127 11 C -0.107 4.107 12 C -0.099 4.099 13 C 0.083 3.917 14 N -0.661 5.661 15 C 0.085 3.915 16 C -0.209 4.209 17 C 0.078 3.922 18 C -0.429 4.429 19 H 0.097 0.903 20 C 0.083 3.917 21 N -0.805 5.805 22 Si 0.905 3.095 23 H -0.266 1.266 24 H -0.290 1.290 25 H -0.246 1.246 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.131 0.869 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.342 0.658 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 14.110 0.535 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.220 6.220 3 C -0.004 4.004 4 C -0.193 4.193 5 C -0.210 4.210 6 C -0.047 4.047 7 C -0.008 4.008 8 C -0.136 4.136 9 C -0.114 4.114 10 C -0.127 4.127 11 C -0.107 4.107 12 C -0.118 4.118 13 C -0.046 4.046 14 N -0.289 5.289 15 C -0.044 4.044 16 C -0.228 4.228 17 C 0.075 3.925 18 C -0.457 4.457 19 H 0.115 0.885 20 C -0.135 4.135 21 N -0.429 5.429 22 Si 0.732 3.268 23 H -0.192 1.192 24 H -0.217 1.217 25 H -0.169 1.169 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.157 0.843 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.132 0.868 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.574 13.542 -0.193 14.007 hybrid contribution -0.019 0.735 0.484 0.880 sum -3.593 14.277 0.292 14.725 Atomic orbital electron populations 1.22812 0.81249 1.02212 1.00111 1.86015 1.18608 1.27827 1.89519 1.19266 0.92103 0.82936 1.06102 1.20633 0.97871 0.92564 1.08243 1.20173 0.92740 0.95731 1.12378 1.18237 0.92999 0.90290 1.03141 1.18976 0.92714 0.92817 0.96287 1.21366 0.94537 0.97431 1.00309 1.20334 0.99268 0.90964 1.00808 1.20428 0.94473 0.94459 1.03381 1.20350 0.94551 0.94240 1.01577 1.20516 0.99894 0.89994 1.01359 1.21349 0.94218 0.89181 0.99850 1.63474 1.02196 1.04827 1.58374 1.21328 0.94882 0.89925 0.98279 1.20938 0.98258 0.90977 1.12634 1.17056 0.88479 0.93302 0.93687 1.19324 0.97537 0.97559 1.31305 0.88543 1.26132 0.94981 0.96210 0.96211 1.69715 1.05744 1.31874 1.35556 0.86470 0.79709 0.80191 0.80452 1.19191 1.21706 1.16935 0.89652 0.93940 0.93892 0.87750 0.88144 0.85175 0.86293 0.85766 0.89402 0.92692 0.84278 0.92857 0.89563 0.86832 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.81 101.05 0.99 1.50 16 2 O -0.31 -6.82 9.81 -18.51 -0.18 -7.00 16 3 C 0.04 0.96 6.72 -38.29 -0.26 0.70 16 4 C -0.17 -3.61 9.01 -39.56 -0.36 -3.97 16 5 C -0.19 -3.90 9.42 -39.03 -0.37 -4.27 16 6 C -0.05 -1.01 5.86 -104.95 -0.62 -1.63 16 7 C -0.01 -0.15 5.87 -104.90 -0.62 -0.77 16 8 C -0.12 -2.18 9.41 -39.26 -0.37 -2.55 16 9 C -0.10 -1.49 10.03 -39.65 -0.40 -1.89 16 10 C -0.13 -1.87 6.26 -104.22 -0.65 -2.53 16 11 C -0.11 -1.61 6.25 -104.35 -0.65 -2.26 16 12 C -0.10 -1.67 9.41 -39.27 -0.37 -2.03 16 13 C 0.08 0.97 7.45 -4.10 -0.03 0.94 16 14 N -0.66 -7.24 7.71 -114.02 -0.88 -8.12 16 15 C 0.08 0.97 7.45 -4.09 -0.03 0.94 16 16 C -0.21 -5.01 6.66 -38.58 -0.26 -5.27 16 17 C 0.08 2.00 5.14 -106.72 -0.55 1.45 16 18 C -0.43 -11.77 9.19 -37.84 -0.35 -12.12 16 19 H 0.10 2.82 7.87 -52.48 -0.41 2.41 16 20 C 0.08 2.20 5.40 -17.33 -0.09 2.10 16 21 N -0.80 -21.46 13.93 55.55 0.77 -20.69 16 22 Si 0.91 20.91 24.56 -169.99 -4.18 16.73 16 23 H -0.27 -5.77 5.78 56.52 0.33 -5.44 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.25 -5.92 7.05 56.52 0.40 -5.52 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 28 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 29 H 0.10 1.84 6.27 -52.48 -0.33 1.51 16 30 H 0.10 1.76 6.21 -52.49 -0.33 1.44 16 31 H 0.13 2.48 5.55 -52.48 -0.29 2.19 16 32 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 33 H 0.12 1.89 6.22 -52.49 -0.33 1.56 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.34 2.74 8.92 -39.29 -0.35 2.38 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.11 2.70 2.73 -52.48 -0.14 2.56 16 40 H 0.29 6.89 8.30 -40.82 -0.34 6.55 16 LS Contribution 321.46 15.07 4.84 4.84 Total: -1.00 -29.41 321.46 -9.31 -38.72 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -4.72 Total: 7.16 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: -4.97 Total: -31.65 kcal Atomic # 7 Polarization: -28.70 SS G_CDS: -0.11 Total: -28.80 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.18 Total: -7.00 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.18 Total: 16.73 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.41 -9.31 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242675464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.751 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds