Wall clock time and date at job start Tue Mar 31 2020 06:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35605 * 116.99468 * 2 1 4 4 C 1.38519 * 120.08606 * 359.97438 * 3 2 1 5 5 C 1.38027 * 120.30729 * 179.76270 * 4 3 2 6 6 C 1.39923 * 120.47511 * 0.51407 * 5 4 3 7 7 C 1.48371 * 119.92392 * 179.75556 * 6 5 4 8 8 C 1.39378 * 120.12993 * 174.32688 * 7 6 5 9 9 C 1.37971 * 119.87556 * 179.70218 * 8 7 6 10 10 C 1.38311 * 120.19530 * 0.30714 * 9 8 7 11 11 C 1.38558 * 120.16311 * 359.97438 * 10 9 8 12 12 C 1.37977 * 120.08804 * 359.94860 * 11 10 9 13 13 C 1.51205 * 108.24440 * 179.97438 * 11 10 9 14 14 N 1.48043 * 105.67139 * 17.53051 * 13 11 10 15 15 C 1.48035 * 103.90243 * 332.34097 * 14 13 11 16 16 C 1.38619 * 120.15755 * 359.48540 * 6 5 4 17 17 C 1.40530 * 119.69022 * 0.25041 * 16 6 5 18 18 C 1.41180 * 120.23125 * 180.02562 * 17 16 6 19 19 H 1.08008 * 119.99482 * 151.25367 * 18 17 16 20 20 C 1.39907 * 120.00339 * 331.26266 * 18 17 16 21 21 N 1.30882 * 119.99772 * 161.30024 * 20 18 17 22 22 Si 1.86796 * 119.99856 * 341.29693 * 20 18 17 23 23 H 1.48494 * 109.47152 * 90.58070 * 22 20 18 24 24 H 1.48500 * 109.47306 * 210.58088 * 22 20 18 25 25 H 1.48499 * 109.47267 * 330.57865 * 22 20 18 26 26 H 1.09007 * 109.46742 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47691 * 299.99656 * 1 2 3 28 28 H 1.08998 * 109.47083 * 60.00044 * 1 2 3 29 29 H 1.08004 * 119.84481 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.76341 * 180.27217 * 5 4 3 31 31 H 1.08003 * 120.05856 * 359.97438 * 8 7 6 32 32 H 1.08005 * 119.90157 * 180.28079 * 9 8 7 33 33 H 1.07999 * 120.02966 * 180.02562 * 12 11 10 34 34 H 1.08996 * 110.20591 * 136.58600 * 13 11 10 35 35 H 1.09000 * 110.20539 * 258.40269 * 13 11 10 36 36 H 1.00901 * 110.99770 * 212.96490 * 14 13 11 37 37 H 1.09006 * 110.20357 * 268.60960 * 15 14 13 38 38 H 1.09000 * 110.20748 * 146.72178 * 15 14 13 39 39 H 1.08004 * 120.16104 * 180.27664 * 16 6 5 40 40 H 0.97005 * 119.99409 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2918 2.3711 -0.0005 5 6 1.9135 3.6034 0.0044 6 6 3.3098 3.6938 -0.0008 7 6 3.9654 5.0248 -0.0009 8 6 5.3511 5.1222 0.1131 9 6 5.9557 6.3623 0.1062 10 6 5.1903 7.5088 -0.0070 11 6 3.8120 7.4179 -0.1148 12 6 3.1978 6.1823 -0.1105 13 6 3.2521 8.8184 -0.2220 14 7 4.3965 9.6788 -0.5984 15 6 5.5715 8.9719 -0.0408 16 6 4.0822 2.5427 -0.0003 17 6 3.4563 1.2845 0.0002 18 6 4.2318 0.1047 0.0014 19 1 3.8429 -0.7967 0.4516 20 6 5.5041 0.1033 -0.5806 21 7 6.3623 -0.8365 -0.2752 22 14 5.9779 1.4428 -1.7933 23 1 6.5994 2.5757 -1.0617 24 1 6.9468 0.8986 -2.7783 25 1 4.7641 1.9189 -2.5041 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2133 2.3132 -0.0005 30 1 1.3180 4.5043 0.0084 31 1 5.9507 4.2284 0.2022 32 1 7.0298 6.4381 0.1900 33 1 2.1234 6.1125 -0.1949 34 1 2.4819 8.8579 -0.9922 35 1 2.8415 9.1341 0.7370 36 1 4.3041 10.5996 -0.1965 37 1 5.7825 9.3293 0.9672 38 1 6.4398 9.1201 -0.6828 39 1 5.1600 2.6124 0.0002 40 1 7.2443 -0.8376 -0.6790 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242675464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:35 Heat of formation + Delta-G solvation = 0.844918 kcal Electronic energy + Delta-G solvation = -22743.707060 eV Core-core repulsion = 19487.440606 eV Total energy + Delta-G solvation = -3256.266454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33210 -40.52257 -38.51131 -36.93819 -35.51892 -33.07231 -32.18875 -31.98539 -29.53725 -28.51288 -27.99167 -26.71915 -24.66771 -23.55560 -22.68400 -22.03601 -20.91099 -19.36244 -18.81473 -17.79813 -17.09477 -16.89996 -16.55974 -16.33743 -16.29702 -16.04026 -15.29574 -14.91587 -14.83831 -14.68634 -14.21500 -14.14159 -13.96278 -13.80727 -13.53761 -13.24630 -13.05217 -12.88375 -12.77695 -12.58641 -12.47853 -12.15268 -11.85794 -11.78656 -11.61331 -11.39006 -10.97158 -10.23801 -9.90280 -9.63432 -9.33786 -8.90498 -8.48037 -6.40521 -0.13151 0.38670 0.70663 1.03847 1.20518 1.36957 1.42438 2.07156 2.48026 2.79191 2.86042 3.30307 3.39338 3.48302 3.57852 3.86553 4.03590 4.16645 4.30118 4.38829 4.43831 4.46898 4.48150 4.48392 4.51100 4.60605 4.69572 4.74495 4.82508 4.95557 5.00849 5.04623 5.16557 5.24215 5.34060 5.35720 5.48907 5.64828 5.66886 5.70928 5.99833 6.00952 6.14788 6.26665 6.39079 6.44468 6.77491 7.04477 8.19034 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.004956 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.974918 B = 5647.878017 C = 7109.806879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.339 6.339 3 C 0.027 3.973 4 C -0.171 4.171 5 C -0.172 4.172 6 C -0.057 4.057 7 C -0.040 4.040 8 C -0.139 4.139 9 C -0.099 4.099 10 C -0.125 4.125 11 C -0.112 4.112 12 C -0.099 4.099 13 C 0.086 3.914 14 N -0.666 5.666 15 C 0.087 3.913 16 C -0.216 4.216 17 C 0.048 3.952 18 C -0.469 4.469 19 H 0.055 0.945 20 C 0.051 3.949 21 N -0.849 5.849 22 Si 0.954 3.046 23 H -0.250 1.250 24 H -0.275 1.275 25 H -0.263 1.263 26 H 0.109 0.891 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.111 0.889 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.361 0.639 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 18.848 0.164 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.254 6.254 3 C -0.018 4.018 4 C -0.189 4.189 5 C -0.190 4.190 6 C -0.057 4.057 7 C -0.040 4.040 8 C -0.157 4.157 9 C -0.117 4.117 10 C -0.126 4.126 11 C -0.113 4.113 12 C -0.117 4.117 13 C -0.043 4.043 14 N -0.297 5.297 15 C -0.042 4.042 16 C -0.236 4.236 17 C 0.045 3.955 18 C -0.499 4.499 19 H 0.073 0.927 20 C -0.163 4.163 21 N -0.477 5.477 22 Si 0.778 3.222 23 H -0.175 1.175 24 H -0.202 1.202 25 H -0.187 1.187 26 H 0.127 0.873 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.129 0.871 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.179 0.821 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.287 18.299 -0.552 19.056 hybrid contribution 0.268 -0.481 0.670 0.867 sum -5.019 17.819 0.119 18.512 Atomic orbital electron populations 1.23192 0.77966 1.04519 1.01599 1.85978 1.22113 1.27781 1.89527 1.19491 0.91855 0.84493 1.05993 1.21053 0.99778 0.91493 1.06610 1.20738 0.92545 0.97126 1.08626 1.18586 0.93848 0.90976 1.02306 1.18934 0.93300 0.92425 0.99337 1.21361 0.94487 0.98084 1.01783 1.20546 1.00640 0.90330 1.00204 1.20935 0.94588 0.96007 1.01048 1.20802 0.95031 0.95333 1.00089 1.20634 1.00533 0.89780 1.00800 1.21412 0.94499 0.86961 1.01397 1.63461 1.01629 1.05701 1.58891 1.21404 0.95398 0.87474 0.99911 1.21031 0.98430 0.91405 1.12699 1.17285 0.90003 0.93251 0.94913 1.19183 0.99150 0.97186 1.34386 0.92680 1.26667 0.94610 0.97956 0.97055 1.69743 1.06516 1.33852 1.37545 0.85725 0.78968 0.78648 0.78849 1.17515 1.20167 1.18733 0.87269 0.92240 0.92234 0.83842 0.84228 0.87097 0.84051 0.84133 0.88501 0.90458 0.82131 0.90581 0.88579 0.87489 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 9.81 113.37 1.11 1.77 16 2 O -0.34 -15.48 9.81 -89.16 -0.87 -16.36 16 3 C 0.03 1.28 6.72 23.11 0.16 1.44 16 4 C -0.17 -6.71 9.01 22.29 0.20 -6.51 16 5 C -0.17 -6.55 9.42 22.63 0.21 -6.33 16 6 C -0.06 -2.44 5.86 -20.08 -0.12 -2.56 16 7 C -0.04 -1.49 5.87 -20.04 -0.12 -1.61 16 8 C -0.14 -5.06 9.41 22.48 0.21 -4.85 16 9 C -0.10 -2.90 10.03 22.22 0.22 -2.68 16 10 C -0.13 -3.26 6.26 -19.60 -0.12 -3.38 16 11 C -0.11 -2.94 6.25 -19.69 -0.12 -3.07 16 12 C -0.10 -3.02 9.41 22.47 0.21 -2.81 16 13 C 0.09 1.58 7.45 85.50 0.64 2.22 16 14 N -0.67 -11.33 7.71 -514.63 -3.97 -15.30 16 15 C 0.09 1.58 7.45 85.51 0.64 2.22 16 16 C -0.22 -10.72 6.66 22.92 0.15 -10.56 16 17 C 0.05 2.59 5.14 -21.23 -0.11 2.48 16 18 C -0.47 -27.91 9.19 23.40 0.22 -27.70 16 19 H 0.05 3.58 7.87 -2.91 -0.02 3.56 16 20 C 0.05 2.87 5.40 85.24 0.46 3.33 16 21 N -0.85 -48.52 13.93 21.82 0.30 -48.22 16 22 Si 0.95 45.18 24.56 68.60 1.68 46.87 16 23 H -0.25 -11.00 5.78 99.48 0.57 -10.43 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.26 -12.99 7.05 99.48 0.70 -12.29 16 26 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 27 H 0.06 1.59 7.66 -2.39 -0.02 1.57 16 28 H 0.06 1.59 7.65 -2.39 -0.02 1.58 16 29 H 0.14 4.45 6.27 -2.91 -0.02 4.44 16 30 H 0.14 4.21 6.21 -2.91 -0.02 4.20 16 31 H 0.11 4.36 5.55 -2.91 -0.02 4.35 16 32 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 33 H 0.14 3.66 6.22 -2.91 -0.02 3.64 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.36 3.91 8.92 -89.69 -0.80 3.11 16 37 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.11 5.33 2.73 -2.91 -0.01 5.32 16 40 H 0.29 15.01 8.30 -92.70 -0.77 14.24 16 Total: -1.00 -69.42 321.46 1.14 -68.28 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.16 Total: 23.33 kcal Atomic # 6 Polarization: -62.45 SS G_CDS: 3.84 Total: -58.61 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -3.67 Total: -63.52 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.87 Total: -16.36 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.68 Total: 46.87 kcal Total: -69.42 1.14 -68.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242675464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.129 kcal (2) G-P(sol) polarization free energy of solvation -69.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds