Wall clock time and date at job start Tue Mar 31 2020 06:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35597 * 116.99875 * 2 1 4 4 C 1.38513 * 120.08831 * 359.97438 * 3 2 1 5 5 C 1.38027 * 120.31032 * 180.02562 * 4 3 2 6 6 C 1.39929 * 120.47121 * 359.97438 * 5 4 3 7 7 C 1.48380 * 119.91866 * 179.97438 * 6 5 4 8 8 C 1.39771 * 120.53588 * 130.00301 * 7 6 5 9 9 C 1.38408 * 118.31455 * 179.97438 * 8 7 6 10 10 C 1.38323 * 119.28049 * 359.97438 * 9 8 7 11 11 N 1.31884 * 121.03194 * 359.97438 * 10 9 8 12 12 C 1.31750 * 121.85523 * 359.76971 * 11 10 9 13 13 C 1.50699 * 119.70176 * 180.26693 * 12 11 10 14 14 C 1.52991 * 117.50132 * 8.84609 * 13 12 11 15 15 C 1.52996 * 117.49983 * 300.21879 * 13 12 11 16 16 C 1.38614 * 120.15909 * 359.78943 * 6 5 4 17 17 C 1.40526 * 119.68977 * 0.46203 * 16 6 5 18 18 C 1.41183 * 120.22939 * 179.79305 * 17 16 6 19 19 H 1.08002 * 119.99865 * 154.43083 * 18 17 16 20 20 C 1.39904 * 119.99995 * 334.70894 * 18 17 16 21 21 N 1.30877 * 120.00116 * 342.59526 * 20 18 17 22 22 Si 1.86802 * 120.00090 * 162.59754 * 20 18 17 23 23 H 1.48498 * 109.46922 * 59.99834 * 22 20 18 24 24 H 1.48499 * 109.47156 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47075 * 300.00069 * 22 20 18 26 26 H 1.09001 * 109.46667 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46839 * 300.00106 * 1 2 3 28 28 H 1.08991 * 109.46745 * 59.99836 * 1 2 3 29 29 H 1.08002 * 119.84236 * 0.04925 * 4 3 2 30 30 H 1.08002 * 119.76354 * 180.02562 * 5 4 3 31 31 H 1.08002 * 120.84509 * 359.96157 * 8 7 6 32 32 H 1.07999 * 120.35886 * 180.02562 * 9 8 7 33 33 H 1.08002 * 119.47888 * 179.97438 * 10 9 8 34 34 H 1.08997 * 115.54581 * 154.55820 * 13 12 11 35 35 H 1.08997 * 117.49889 * 359.97438 * 14 13 12 36 36 H 1.09002 * 117.49626 * 145.02260 * 14 13 12 37 37 H 1.08998 * 117.50523 * 214.98265 * 15 13 12 38 38 H 1.09010 * 117.49780 * 359.97438 * 15 13 12 39 39 H 1.08002 * 120.15575 * 180.22869 * 16 6 5 40 40 H 0.97010 * 120.00245 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2920 2.3710 -0.0005 5 6 1.9138 3.6033 -0.0011 6 6 3.3102 3.6934 -0.0005 7 6 3.9659 5.0245 -0.0017 8 6 4.9735 5.3206 0.9206 9 6 5.5541 6.5763 0.8781 10 6 5.1230 7.4893 -0.0674 11 7 4.1704 7.1807 -0.9257 12 6 3.5921 5.9969 -0.9267 13 6 2.5124 5.6941 -1.9335 14 6 2.2802 6.7152 -3.0489 15 6 1.2621 6.5757 -1.9153 16 6 4.0824 2.5423 0.0049 17 6 3.4564 1.2842 0.0001 18 6 4.2318 0.1044 0.0012 19 1 3.8216 -0.8110 0.4016 20 6 5.5336 0.1224 -0.5110 21 7 5.9178 1.1035 -1.2874 22 14 6.7233 -1.2538 -0.0869 23 1 6.1703 -2.5489 -0.5581 24 1 8.0278 -1.0024 -0.7505 25 1 6.9174 -1.3045 1.3844 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8899 29 1 0.2135 2.3132 -0.0001 30 1 1.3184 4.5043 -0.0011 31 1 5.2909 4.5882 1.6482 32 1 6.3358 6.8401 1.5749 33 1 5.5735 8.4702 -0.1032 34 1 2.3817 4.6405 -2.1800 35 1 2.9079 7.6062 -3.0543 36 1 1.9966 6.3333 -4.0297 37 1 0.3089 6.1022 -2.1503 38 1 1.2202 7.3745 -1.1747 39 1 5.1602 2.6120 0.0091 40 1 6.8203 1.1159 -1.6429 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243685673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:16 Heat of formation + Delta-G solvation = 37.325288 kcal Electronic energy + Delta-G solvation = -23133.519027 eV Core-core repulsion = 19878.834480 eV Total energy + Delta-G solvation = -3254.684547 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.03856 -38.60645 -36.51085 -36.20479 -33.85060 -32.14397 -31.02233 -29.83556 -27.98381 -26.52190 -25.29390 -24.06298 -22.95479 -22.04296 -20.97537 -20.28758 -19.93679 -17.52373 -16.71444 -16.40980 -15.87152 -15.30454 -15.11125 -14.71796 -14.61416 -14.52859 -13.81009 -13.39849 -13.27846 -12.89580 -12.69570 -12.44455 -12.26396 -11.80347 -11.56282 -11.39189 -11.20867 -11.19006 -10.98598 -10.80033 -10.53438 -10.38089 -10.25085 -9.98363 -9.93294 -9.59710 -9.27571 -9.15264 -8.97804 -8.29474 -7.55970 -6.92788 -6.69614 -4.28696 1.44060 1.69143 2.72543 2.86328 3.07577 3.10495 3.18040 3.94455 3.98078 4.43316 4.46094 4.57401 4.64055 4.98627 5.21846 5.31250 5.39420 5.45208 5.51034 5.57943 5.71784 5.73121 5.79099 5.90655 5.93408 6.01948 6.07231 6.11954 6.20975 6.29283 6.43672 6.50911 6.65948 6.72764 6.79839 7.05593 7.10755 7.23756 7.29397 7.61489 7.64442 7.91312 8.11460 8.31794 8.41486 8.63704 8.79989 8.99871 10.18761 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.005841 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.581665 B = 4792.689259 C = 6222.247099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.021 3.979 4 C -0.180 4.180 5 C -0.183 4.183 6 C -0.071 4.071 7 C -0.044 4.044 8 C -0.073 4.073 9 C -0.179 4.179 10 C 0.078 3.922 11 N -0.486 5.486 12 C 0.159 3.841 13 C -0.100 4.100 14 C -0.166 4.166 15 C -0.164 4.164 16 C -0.122 4.122 17 C 0.095 3.905 18 C -0.446 4.446 19 H 0.082 0.918 20 C 0.074 3.926 21 N -0.796 5.796 22 Si 0.908 3.092 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.264 1.264 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.147 0.853 34 H 0.129 0.871 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 6.877 1.342 7.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.023 4.023 4 C -0.199 4.199 5 C -0.202 4.202 6 C -0.072 4.072 7 C -0.046 4.046 8 C -0.098 4.098 9 C -0.198 4.198 10 C -0.079 4.079 11 N -0.195 5.195 12 C 0.021 3.979 13 C -0.119 4.119 14 C -0.203 4.203 15 C -0.201 4.201 16 C -0.141 4.141 17 C 0.092 3.908 18 C -0.476 4.476 19 H 0.101 0.899 20 C -0.143 4.143 21 N -0.422 5.422 22 Si 0.733 3.267 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.189 1.189 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.147 0.853 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.145 0.855 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.397 7.389 0.586 8.153 hybrid contribution 0.690 -1.054 0.785 1.485 sum -2.707 6.334 1.371 7.024 Atomic orbital electron populations 1.22747 0.81657 1.01795 0.99975 1.85963 1.18286 1.28292 1.90004 1.19343 0.92372 0.82655 1.07947 1.20539 0.97473 0.92659 1.09277 1.20144 0.92662 0.95467 1.11947 1.18222 0.92880 0.90105 1.06032 1.19786 0.95422 0.94914 0.94472 1.21714 0.94329 0.96160 0.97631 1.21969 1.01905 0.94968 1.01000 1.22487 0.94185 0.99281 0.91977 1.67209 1.08904 1.19692 1.23645 1.20366 0.95032 0.88522 0.93954 1.20975 0.94908 0.98089 0.97901 1.22926 1.02623 1.01583 0.93209 1.22879 0.93206 1.02098 1.01938 1.21153 0.99309 0.89446 1.04228 1.16945 0.87310 0.93830 0.92711 1.19365 0.96762 0.96651 1.34786 0.89944 1.25881 0.98815 0.96899 0.92748 1.69823 1.19277 1.30772 1.22326 0.86362 0.78951 0.81555 0.79876 1.18978 1.20415 1.18858 0.90008 0.94184 0.94073 0.88356 0.88589 0.84883 0.85437 0.83563 0.85337 0.87901 0.89090 0.88765 0.89179 0.85532 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 16 2 O -0.31 -7.02 9.77 -18.49 -0.18 -7.20 16 3 C 0.02 0.51 6.72 -38.29 -0.26 0.26 16 4 C -0.18 -3.88 9.01 -39.56 -0.36 -4.23 16 5 C -0.18 -3.87 7.84 -39.03 -0.31 -4.17 16 6 C -0.07 -1.59 4.85 -104.95 -0.51 -2.10 16 7 C -0.04 -0.88 5.47 -104.75 -0.57 -1.46 16 8 C -0.07 -1.30 9.65 -38.95 -0.38 -1.67 16 9 C -0.18 -2.68 10.10 -39.49 -0.40 -3.08 16 10 C 0.08 1.18 11.17 -17.50 -0.20 0.99 16 11 N -0.49 -8.57 9.32 -9.20 -0.09 -8.65 16 12 C 0.16 3.00 6.45 -82.23 -0.53 2.47 16 13 C -0.10 -1.75 4.19 -91.78 -0.38 -2.13 16 14 C -0.17 -2.45 10.02 -26.73 -0.27 -2.72 16 15 C -0.16 -2.37 10.03 -26.73 -0.27 -2.64 16 16 C -0.12 -3.02 8.15 -38.58 -0.31 -3.33 16 17 C 0.09 2.47 5.57 -106.72 -0.59 1.88 16 18 C -0.45 -11.77 8.71 -37.84 -0.33 -12.10 16 19 H 0.08 2.17 7.65 -52.49 -0.40 1.77 16 20 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 21 N -0.80 -20.32 10.98 55.55 0.61 -19.71 16 22 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 29 H 0.10 1.84 6.27 -52.49 -0.33 1.51 16 30 H 0.10 1.87 7.10 -52.49 -0.37 1.49 16 31 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.13 2.48 6.60 -51.93 -0.34 2.14 16 35 H 0.10 1.54 7.57 -51.93 -0.39 1.15 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.09 1.31 8.14 -51.92 -0.42 0.88 16 39 H 0.13 3.27 6.17 -52.49 -0.32 2.94 16 40 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 LS Contribution 335.59 15.07 5.06 5.06 Total: -1.00 -28.29 335.59 -9.44 -37.73 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.05 Total: 9.86 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: -4.76 Total: -30.75 kcal Atomic # 7 Polarization: -28.89 SS G_CDS: 0.52 Total: -28.36 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.18 Total: -7.20 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.29 -9.44 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243685673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.052 kcal (2) G-P(sol) polarization free energy of solvation -28.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds