Wall clock time and date at job start Tue Mar 31 2020 06:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35597 * 116.99875 * 2 1 4 4 C 1.38513 * 120.08831 * 359.97438 * 3 2 1 5 5 C 1.38027 * 120.31032 * 180.02562 * 4 3 2 6 6 C 1.39929 * 120.47121 * 359.97438 * 5 4 3 7 7 C 1.48380 * 119.91866 * 179.97438 * 6 5 4 8 8 C 1.39771 * 120.53588 * 130.00301 * 7 6 5 9 9 C 1.38408 * 118.31455 * 179.97438 * 8 7 6 10 10 C 1.38323 * 119.28049 * 359.97438 * 9 8 7 11 11 N 1.31884 * 121.03194 * 359.97438 * 10 9 8 12 12 C 1.31750 * 121.85523 * 359.76971 * 11 10 9 13 13 C 1.50699 * 119.70176 * 180.26693 * 12 11 10 14 14 C 1.52991 * 117.50132 * 8.84609 * 13 12 11 15 15 C 1.52996 * 117.49983 * 300.21879 * 13 12 11 16 16 C 1.38614 * 120.15909 * 359.78943 * 6 5 4 17 17 C 1.40526 * 119.68977 * 0.46203 * 16 6 5 18 18 C 1.41183 * 120.22939 * 179.79305 * 17 16 6 19 19 H 1.08002 * 119.99865 * 154.43083 * 18 17 16 20 20 C 1.39904 * 119.99995 * 334.70894 * 18 17 16 21 21 N 1.30877 * 120.00116 * 342.59526 * 20 18 17 22 22 Si 1.86802 * 120.00090 * 162.59754 * 20 18 17 23 23 H 1.48498 * 109.46922 * 59.99834 * 22 20 18 24 24 H 1.48499 * 109.47156 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47075 * 300.00069 * 22 20 18 26 26 H 1.09001 * 109.46667 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46839 * 300.00106 * 1 2 3 28 28 H 1.08991 * 109.46745 * 59.99836 * 1 2 3 29 29 H 1.08002 * 119.84236 * 0.04925 * 4 3 2 30 30 H 1.08002 * 119.76354 * 180.02562 * 5 4 3 31 31 H 1.08002 * 120.84509 * 359.96157 * 8 7 6 32 32 H 1.07999 * 120.35886 * 180.02562 * 9 8 7 33 33 H 1.08002 * 119.47888 * 179.97438 * 10 9 8 34 34 H 1.08997 * 115.54581 * 154.55820 * 13 12 11 35 35 H 1.08997 * 117.49889 * 359.97438 * 14 13 12 36 36 H 1.09002 * 117.49626 * 145.02260 * 14 13 12 37 37 H 1.08998 * 117.50523 * 214.98265 * 15 13 12 38 38 H 1.09010 * 117.49780 * 359.97438 * 15 13 12 39 39 H 1.08002 * 120.15575 * 180.22869 * 16 6 5 40 40 H 0.97010 * 120.00245 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2920 2.3710 -0.0005 5 6 1.9138 3.6033 -0.0011 6 6 3.3102 3.6934 -0.0005 7 6 3.9659 5.0245 -0.0017 8 6 4.9735 5.3206 0.9206 9 6 5.5541 6.5763 0.8781 10 6 5.1230 7.4893 -0.0674 11 7 4.1704 7.1807 -0.9257 12 6 3.5921 5.9969 -0.9267 13 6 2.5124 5.6941 -1.9335 14 6 2.2802 6.7152 -3.0489 15 6 1.2621 6.5757 -1.9153 16 6 4.0824 2.5423 0.0049 17 6 3.4564 1.2842 0.0001 18 6 4.2318 0.1044 0.0012 19 1 3.8216 -0.8110 0.4016 20 6 5.5336 0.1224 -0.5110 21 7 5.9178 1.1035 -1.2874 22 14 6.7233 -1.2538 -0.0869 23 1 6.1703 -2.5489 -0.5581 24 1 8.0278 -1.0024 -0.7505 25 1 6.9174 -1.3045 1.3844 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8899 29 1 0.2135 2.3132 -0.0001 30 1 1.3184 4.5043 -0.0011 31 1 5.2909 4.5882 1.6482 32 1 6.3358 6.8401 1.5749 33 1 5.5735 8.4702 -0.1032 34 1 2.3817 4.6405 -2.1800 35 1 2.9079 7.6062 -3.0543 36 1 1.9966 6.3333 -4.0297 37 1 0.3089 6.1022 -2.1503 38 1 1.2202 7.3745 -1.1747 39 1 5.1602 2.6120 0.0091 40 1 6.8203 1.1159 -1.6429 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243685673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:15 Heat of formation + Delta-G solvation = 23.599063 kcal Electronic energy + Delta-G solvation = -23134.114241 eV Core-core repulsion = 19878.834480 eV Total energy + Delta-G solvation = -3255.279760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.41102 -40.27610 -37.91903 -37.70584 -35.65061 -33.62119 -32.39615 -31.60364 -29.57045 -28.01549 -27.05245 -25.40842 -24.39379 -23.22676 -22.72761 -21.66679 -21.50871 -19.29859 -18.31411 -17.84220 -17.36429 -16.85641 -16.56431 -16.28059 -16.15721 -15.90775 -15.13035 -14.91764 -14.70757 -14.53161 -14.19373 -14.06369 -13.59012 -13.50176 -13.10854 -12.99435 -12.80456 -12.54490 -12.35373 -12.31722 -12.14072 -11.84240 -11.68687 -11.55292 -11.30297 -11.28106 -11.04060 -10.61059 -10.33900 -9.66353 -9.39762 -8.70336 -8.46450 -6.22075 0.06892 0.33732 0.96347 1.12627 1.37220 1.47829 1.52052 2.22401 2.67227 2.76025 2.91669 3.20109 3.37865 3.64531 3.71750 3.93377 4.04758 4.11538 4.27890 4.30099 4.38627 4.43269 4.43833 4.50342 4.60484 4.70487 4.75960 4.78386 4.82971 5.02187 5.03597 5.17234 5.18947 5.30727 5.31754 5.36779 5.43709 5.52198 5.75829 5.83573 5.91722 6.12884 6.29469 6.47713 6.78967 6.92096 7.08839 7.22267 8.36762 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.005841 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.581665 B = 4792.689259 C = 6222.247099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.339 6.339 3 C 0.008 3.992 4 C -0.180 4.180 5 C -0.171 4.171 6 C -0.069 4.069 7 C -0.082 4.082 8 C -0.085 4.085 9 C -0.169 4.169 10 C 0.084 3.916 11 N -0.497 5.497 12 C 0.152 3.848 13 C -0.130 4.130 14 C -0.153 4.153 15 C -0.143 4.143 16 C -0.140 4.140 17 C 0.057 3.943 18 C -0.484 4.484 19 H 0.069 0.931 20 C 0.036 3.964 21 N -0.829 5.829 22 Si 0.976 3.024 23 H -0.263 1.263 24 H -0.268 1.268 25 H -0.260 1.260 26 H 0.110 0.890 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.167 0.833 33 H 0.189 0.811 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.977 8.777 1.534 9.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.254 6.254 3 C -0.036 4.036 4 C -0.199 4.199 5 C -0.190 4.190 6 C -0.070 4.070 7 C -0.084 4.084 8 C -0.111 4.111 9 C -0.188 4.188 10 C -0.073 4.073 11 N -0.205 5.205 12 C 0.015 3.985 13 C -0.149 4.149 14 C -0.190 4.190 15 C -0.181 4.181 16 C -0.159 4.159 17 C 0.055 3.945 18 C -0.514 4.514 19 H 0.087 0.913 20 C -0.178 4.178 21 N -0.456 5.456 22 Si 0.797 3.203 23 H -0.188 1.188 24 H -0.192 1.192 25 H -0.185 1.185 26 H 0.129 0.871 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.184 0.816 33 H 0.206 0.794 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.962 9.292 0.778 10.132 hybrid contribution 0.739 -1.471 0.736 1.804 sum -3.223 7.821 1.514 8.594 Atomic orbital electron populations 1.23101 0.78541 1.04219 1.01083 1.85909 1.21584 1.27941 1.90008 1.19497 0.92188 0.84031 1.07914 1.20866 0.99031 0.91837 1.08156 1.20449 0.92523 0.96199 1.09823 1.18433 0.93428 0.90679 1.04446 1.19813 0.97429 0.94432 0.96772 1.21879 0.94180 0.97634 0.97400 1.22344 1.01884 0.93320 1.01274 1.23263 0.92749 1.00801 0.90508 1.67300 1.09781 1.18953 1.24513 1.20488 0.95458 0.88707 0.93858 1.20865 0.96832 0.97410 0.99802 1.22981 1.02199 1.00257 0.93524 1.22950 0.92891 1.00831 1.01422 1.21026 0.98612 0.90280 1.06024 1.17339 0.88911 0.94334 0.93964 1.19462 0.98394 0.96547 1.37000 0.91270 1.26630 0.99816 0.99310 0.92037 1.69893 1.19797 1.32599 1.23321 0.85343 0.76914 0.78357 0.79662 1.18751 1.19189 1.18458 0.87142 0.92750 0.93011 0.85153 0.86476 0.85309 0.81552 0.79379 0.88019 0.87975 0.87554 0.86965 0.88899 0.87548 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.81 113.37 1.11 1.92 16 2 O -0.34 -15.62 9.77 -89.07 -0.87 -16.49 16 3 C 0.01 0.42 6.72 23.11 0.16 0.57 16 4 C -0.18 -7.70 9.01 22.29 0.20 -7.50 16 5 C -0.17 -7.23 7.84 22.63 0.18 -7.06 16 6 C -0.07 -3.17 4.85 -20.08 -0.10 -3.27 16 7 C -0.08 -3.36 5.47 -19.95 -0.11 -3.47 16 8 C -0.09 -3.04 9.65 22.68 0.22 -2.82 16 9 C -0.17 -4.65 10.10 22.33 0.23 -4.43 16 10 C 0.08 2.29 11.17 84.71 0.95 3.24 16 11 N -0.50 -16.54 9.32 -183.02 -1.71 -18.25 16 12 C 0.15 5.65 6.45 42.83 0.28 5.93 16 13 C -0.13 -4.46 4.19 -11.54 -0.05 -4.51 16 14 C -0.15 -4.22 10.02 30.59 0.31 -3.91 16 15 C -0.14 -3.85 10.03 30.59 0.31 -3.54 16 16 C -0.14 -7.34 8.15 22.92 0.19 -7.16 16 17 C 0.06 3.14 5.57 -21.23 -0.12 3.02 16 18 C -0.48 -27.12 8.71 23.40 0.20 -26.92 16 19 H 0.07 3.88 7.65 -2.91 -0.02 3.86 16 20 C 0.04 1.86 5.14 85.24 0.44 2.29 16 21 N -0.83 -44.54 10.98 21.82 0.24 -44.30 16 22 Si 0.98 39.74 29.59 68.60 2.03 41.77 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.05 1.55 7.66 -2.39 -0.02 1.53 16 28 H 0.05 1.51 7.65 -2.39 -0.02 1.50 16 29 H 0.13 4.62 6.27 -2.91 -0.02 4.60 16 30 H 0.12 4.41 7.10 -2.91 -0.02 4.39 16 31 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 32 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.10 4.01 6.60 -2.39 -0.02 3.99 16 35 H 0.10 2.85 7.57 -2.39 -0.02 2.83 16 36 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 39 H 0.11 5.91 6.17 -2.91 -0.02 5.90 16 40 H 0.29 14.02 8.30 -92.70 -0.77 13.25 16 Total: -1.00 -65.54 335.59 5.13 -60.41 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 1.05 Total: 34.46 kcal Atomic # 6 Polarization: -61.99 SS G_CDS: 4.38 Total: -57.60 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -1.47 Total: -62.55 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.87 Total: -16.49 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -65.54 5.13 -60.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243685673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.013 kcal (2) G-P(sol) polarization free energy of solvation -65.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds