Wall clock time and date at job start Tue Mar 31 2020 06:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35606 * 116.99613 * 2 1 4 4 C 1.39143 * 119.88540 * 359.97438 * 3 2 1 5 5 C 1.36421 * 120.43649 * 180.02562 * 4 3 2 6 6 C 1.40909 * 120.18596 * 0.02570 * 5 4 3 7 7 C 1.41250 * 120.11092 * 179.70350 * 6 5 4 8 8 H 1.07993 * 120.00236 * 334.77570 * 7 6 5 9 9 C 1.39865 * 119.99587 * 154.78315 * 7 6 5 10 10 N 1.30896 * 119.99980 * 342.78224 * 9 7 6 11 11 Si 1.86799 * 120.00035 * 162.77561 * 9 7 6 12 12 H 1.48501 * 109.46772 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46967 * 119.99835 * 11 9 7 14 14 H 1.48497 * 109.47106 * 240.00270 * 11 9 7 15 15 C 1.40614 * 119.76549 * 359.97177 * 6 5 4 16 16 C 1.38591 * 119.56986 * 0.02562 * 15 6 5 17 17 C 1.48338 * 120.09820 * 180.02562 * 16 15 6 18 18 C 1.39787 * 120.53716 * 64.71743 * 17 16 15 19 19 C 1.38412 * 118.31030 * 179.73986 * 18 17 16 20 20 C 1.38328 * 119.28215 * 0.55994 * 19 18 17 21 21 N 1.31889 * 121.03265 * 359.70307 * 20 19 18 22 22 C 1.31743 * 121.85639 * 359.97438 * 21 20 19 23 23 C 1.50699 * 119.70441 * 180.02562 * 22 21 20 24 24 C 1.53008 * 117.49810 * 8.76538 * 23 22 21 25 25 C 1.52998 * 117.49732 * 300.11025 * 23 22 21 26 26 H 1.09001 * 109.46801 * 300.00249 * 1 2 3 27 27 H 1.08991 * 109.47371 * 59.99862 * 1 2 3 28 28 H 1.08998 * 109.47044 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.78604 * 0.02562 * 4 3 2 30 30 H 1.08007 * 119.90261 * 179.97438 * 5 4 3 31 31 H 0.97004 * 119.99949 * 179.97438 * 10 9 7 32 32 H 1.07995 * 120.21248 * 179.97438 * 15 6 5 33 33 H 1.08001 * 120.84742 * 0.02562 * 18 17 16 34 34 H 1.07997 * 120.36199 * 180.26122 * 19 18 17 35 35 H 1.07999 * 119.48171 * 179.67664 * 20 19 18 36 36 H 1.08996 * 115.55338 * 154.43411 * 23 22 21 37 37 H 1.09001 * 117.49569 * 0.02562 * 24 23 22 38 38 H 1.08996 * 117.49900 * 145.01762 * 24 23 22 39 39 H 1.09005 * 117.49845 * 214.98024 * 25 23 22 40 40 H 1.09001 * 117.50186 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2844 2.3737 -0.0005 5 6 1.8919 3.5951 -0.0011 6 6 3.2980 3.6871 -0.0016 7 6 3.9254 4.9526 -0.0085 8 1 3.4072 5.8100 -0.4117 9 6 5.2178 5.0951 0.5068 10 7 5.7168 4.1705 1.2875 11 14 6.2320 6.6049 0.0807 12 1 5.4454 7.4938 -0.8117 13 1 6.5788 7.3358 1.3260 14 1 7.4776 6.1855 -0.6105 15 6 4.0742 2.5146 -0.0010 16 6 3.4467 1.2789 -0.0004 17 6 4.2541 0.0345 0.0008 18 6 5.0716 -0.2806 1.0900 19 6 5.8010 -1.4561 1.0449 20 6 5.7076 -2.2679 -0.0713 21 7 4.9316 -1.9413 -1.0865 22 6 4.2142 -0.8364 -1.0860 23 6 3.3433 -0.5110 -2.2721 24 6 3.1765 -1.5905 -3.3434 25 6 4.0298 -0.3525 -3.6302 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 0.2062 2.3109 -0.0005 30 1 1.2934 4.4942 -0.0019 31 1 6.6133 4.2691 1.6445 32 1 5.1524 2.5767 -0.0019 33 1 5.1291 0.3741 1.9470 34 1 6.4399 -1.7341 1.8700 35 1 6.2793 -3.1832 -0.1121 36 1 2.4854 0.1284 -2.0641 37 1 3.6964 -2.5362 -3.1901 38 1 2.2090 -1.6611 -3.8404 39 1 3.6233 0.3910 -4.3159 40 1 5.1113 -0.4832 -3.6658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243686586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:43 Heat of formation + Delta-G solvation = 25.677254 kcal Electronic energy + Delta-G solvation = -23518.575869 eV Core-core repulsion = 20263.386225 eV Total energy + Delta-G solvation = -3255.189643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47092 -40.17813 -38.10063 -37.65763 -35.30963 -34.07704 -32.47992 -30.96369 -30.06970 -28.31969 -26.45551 -25.38817 -24.70894 -23.18702 -22.49138 -21.87840 -21.51771 -19.22057 -18.52378 -17.88725 -17.23198 -16.95172 -16.61152 -16.27015 -16.19042 -15.78489 -15.14736 -14.87778 -14.76310 -14.51466 -14.21776 -13.95383 -13.78743 -13.38592 -13.27225 -12.86766 -12.75562 -12.48206 -12.43036 -12.34540 -12.26052 -11.78650 -11.64561 -11.57802 -11.35356 -11.23484 -10.88171 -10.63529 -10.35161 -9.69970 -9.22355 -8.84911 -8.55660 -6.22108 0.16075 0.36950 0.94566 1.01862 1.38710 1.48814 1.52729 2.22041 2.67713 2.73396 2.83320 3.22863 3.38641 3.64365 3.74544 3.91581 4.06221 4.12450 4.26660 4.30149 4.35776 4.45295 4.46221 4.49751 4.62638 4.75700 4.76790 4.78206 4.88215 5.03017 5.06739 5.18084 5.20369 5.28497 5.30882 5.38561 5.43018 5.58093 5.59907 5.82669 5.92360 6.05605 6.25746 6.57228 6.81209 6.96200 7.07512 7.12160 8.37641 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.005884 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.822191 B = 4757.867929 C = 5523.998448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.334 6.334 3 C 0.023 3.977 4 C -0.169 4.169 5 C -0.198 4.198 6 C 0.056 3.944 7 C -0.497 4.497 8 H 0.075 0.925 9 C 0.036 3.964 10 N -0.830 5.830 11 Si 0.975 3.025 12 H -0.258 1.258 13 H -0.267 1.267 14 H -0.268 1.268 15 C -0.130 4.130 16 C -0.064 4.064 17 C -0.078 4.078 18 C -0.082 4.082 19 C -0.172 4.172 20 C 0.086 3.914 21 N -0.499 5.499 22 C 0.164 3.836 23 C -0.126 4.126 24 C -0.138 4.138 25 C -0.163 4.163 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.285 0.715 32 H 0.105 0.895 33 H 0.123 0.877 34 H 0.165 0.835 35 H 0.190 0.810 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 -9.550 -3.133 10.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.249 6.249 3 C -0.022 4.022 4 C -0.188 4.188 5 C -0.218 4.218 6 C 0.054 3.946 7 C -0.528 4.528 8 H 0.093 0.907 9 C -0.178 4.178 10 N -0.457 5.457 11 Si 0.796 3.204 12 H -0.182 1.182 13 H -0.192 1.192 14 H -0.193 1.193 15 C -0.150 4.150 16 C -0.065 4.065 17 C -0.080 4.080 18 C -0.108 4.108 19 C -0.192 4.192 20 C -0.071 4.071 21 N -0.208 5.208 22 C 0.027 3.973 23 C -0.145 4.145 24 C -0.175 4.175 25 C -0.200 4.200 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.129 0.871 29 H 0.148 0.852 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.141 0.859 34 H 0.183 0.817 35 H 0.207 0.793 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.055 -10.350 -3.702 11.183 hybrid contribution 0.299 1.831 1.097 2.156 sum -1.757 -8.519 -2.605 9.080 Atomic orbital electron populations 1.23074 0.78446 1.04166 1.01149 1.85912 1.21621 1.26929 1.90429 1.18556 0.90526 0.84072 1.09001 1.20655 0.99129 0.91932 1.07040 1.20834 0.94272 0.96456 1.10228 1.17823 0.91804 0.93664 0.91322 1.19679 1.00271 0.95304 1.37507 0.90697 1.26625 0.98476 1.00674 0.92018 1.69886 1.16967 1.35446 1.23367 0.85261 0.78057 0.77920 0.79126 1.18170 1.19173 1.19325 1.21083 0.98835 0.90116 1.04965 1.17861 0.89834 0.91917 1.06924 1.19634 0.97775 0.95168 0.95397 1.21850 0.94488 0.97040 0.97415 1.22312 1.01044 0.94617 1.01193 1.23257 0.95253 1.00048 0.88536 1.67302 1.07499 1.16825 1.29141 1.20450 0.93984 0.89366 0.93481 1.20908 1.00646 1.05460 0.87437 1.22934 1.01648 0.93451 0.99494 1.22959 0.99028 1.01506 0.96542 0.93285 0.92683 0.87066 0.85162 0.87674 0.90454 0.87743 0.85899 0.81717 0.79290 0.87285 0.87894 0.87025 0.87557 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.80 113.37 1.11 1.85 16 2 O -0.33 -12.87 8.55 -89.17 -0.76 -13.63 16 3 C 0.02 0.99 5.32 23.01 0.12 1.12 16 4 C -0.17 -7.22 8.95 22.06 0.20 -7.02 16 5 C -0.20 -9.50 9.72 22.50 0.22 -9.28 16 6 C 0.06 3.00 5.56 -21.31 -0.12 2.88 16 7 C -0.50 -26.69 9.04 23.40 0.21 -26.48 16 8 H 0.07 3.88 7.90 -2.91 -0.02 3.86 16 9 C 0.04 1.81 5.14 85.23 0.44 2.25 16 10 N -0.83 -43.40 10.97 21.82 0.24 -43.16 16 11 Si 0.97 38.64 29.59 68.60 2.03 40.67 16 12 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 13 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 14 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 15 C -0.13 -6.88 8.37 22.93 0.19 -6.69 16 16 C -0.06 -3.03 4.64 -19.98 -0.09 -3.13 16 17 C -0.08 -3.34 4.94 -19.95 -0.10 -3.44 16 18 C -0.08 -3.17 9.89 22.69 0.22 -2.95 16 19 C -0.17 -5.15 10.10 22.33 0.23 -4.92 16 20 C 0.09 2.50 11.17 84.71 0.95 3.45 16 21 N -0.50 -17.44 9.32 -183.01 -1.71 -19.15 16 22 C 0.16 6.42 6.27 42.83 0.27 6.69 16 23 C -0.13 -4.54 5.15 -11.54 -0.06 -4.60 16 24 C -0.14 -3.92 10.03 30.62 0.31 -3.61 16 25 C -0.16 -5.04 10.24 30.62 0.31 -4.73 16 26 H 0.05 1.30 7.65 -2.39 -0.02 1.28 16 27 H 0.05 1.40 7.65 -2.39 -0.02 1.38 16 28 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.13 4.60 6.26 -2.91 -0.02 4.59 16 30 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 31 H 0.28 13.56 8.30 -92.71 -0.77 12.79 16 32 H 0.10 5.89 6.19 -2.91 -0.02 5.87 16 33 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 34 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 35 H 0.19 3.76 8.06 -2.91 -0.02 3.74 16 36 H 0.11 4.31 5.36 -2.39 -0.01 4.30 16 37 H 0.10 2.92 7.57 -2.39 -0.02 2.90 16 38 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.11 2.97 8.14 -2.38 -0.02 2.96 16 40 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -63.04 335.74 5.26 -57.77 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 1.05 Total: 36.12 kcal Atomic # 6 Polarization: -63.03 SS G_CDS: 4.41 Total: -58.62 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -1.47 Total: -62.31 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.76 Total: -13.63 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -63.04 5.26 -57.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243686586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.451 kcal (2) G-P(sol) polarization free energy of solvation -63.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds