Wall clock time and date at job start Tue Mar 31 2020 06:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35596 * 117.00027 * 2 1 4 4 C 1.38510 * 120.08656 * 359.97438 * 3 2 1 5 5 C 1.38026 * 120.31497 * 180.02562 * 4 3 2 6 6 C 1.39933 * 120.46849 * 0.02610 * 5 4 3 7 7 C 1.48381 * 119.91830 * 179.97438 * 6 5 4 8 8 C 1.39388 * 120.04928 * 130.04148 * 7 6 5 9 9 C 1.38035 * 119.69099 * 179.97438 * 8 7 6 10 10 C 1.37960 * 120.37099 * 359.96620 * 9 8 7 11 11 C 1.39739 * 120.54124 * 0.02562 * 10 9 8 12 12 C 1.38426 * 119.09930 * 359.97438 * 11 10 9 13 13 C 1.51203 * 108.59238 * 179.97438 * 12 11 10 14 14 C 1.53752 * 104.52184 * 359.97438 * 13 12 11 15 15 N 1.39619 * 129.25324 * 179.97438 * 11 10 9 16 16 C 1.38611 * 120.15799 * 0.25082 * 6 5 4 17 17 C 1.40523 * 119.69024 * 359.47897 * 16 6 5 18 18 C 1.41189 * 120.23202 * 180.29604 * 17 16 6 19 19 H 1.08000 * 120.00017 * 204.82311 * 18 17 16 20 20 C 1.39915 * 119.99947 * 24.81547 * 18 17 16 21 21 N 1.30872 * 119.99684 * 17.63982 * 20 18 17 22 22 Si 1.86795 * 119.99879 * 197.63522 * 20 18 17 23 23 H 1.48502 * 109.47265 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.46813 * 120.00344 * 22 20 18 25 25 H 1.48497 * 109.47461 * 240.00356 * 22 20 18 26 26 H 1.09005 * 109.46978 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47457 * 300.00234 * 1 2 3 28 28 H 1.08997 * 109.46695 * 60.00747 * 1 2 3 29 29 H 1.08007 * 119.84352 * 0.02871 * 4 3 2 30 30 H 1.07996 * 119.76948 * 180.02562 * 5 4 3 31 31 H 1.08003 * 120.15754 * 359.96793 * 8 7 6 32 32 H 1.08001 * 119.81616 * 180.24208 * 9 8 7 33 33 H 1.08001 * 119.72330 * 179.97438 * 10 9 8 34 34 H 1.08992 * 110.42242 * 241.23667 * 13 12 11 35 35 H 1.08998 * 110.42386 * 118.75554 * 13 12 11 36 36 H 1.09006 * 110.30260 * 241.07893 * 14 13 12 37 37 H 1.09000 * 110.39114 * 118.96478 * 14 13 12 38 38 H 0.96993 * 124.96062 * 0.02562 * 15 11 10 39 39 H 1.08005 * 120.15803 * 179.72552 * 16 6 5 40 40 H 0.96997 * 119.99848 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2920 2.3710 -0.0005 5 6 1.9137 3.6033 -0.0011 6 6 3.3101 3.6935 -0.0016 7 6 3.9657 5.0246 -0.0028 8 6 4.9708 5.3084 0.9204 9 6 5.5761 6.5489 0.9124 10 6 5.1920 7.5065 -0.0035 11 6 4.1860 7.2355 -0.9347 12 6 3.5788 5.9915 -0.9269 13 6 2.5360 5.9571 -2.0212 14 6 2.6131 7.3484 -2.6711 15 7 3.6595 8.0593 -1.9314 16 6 4.0823 2.5424 -0.0069 17 6 3.4563 1.2843 -0.0006 18 6 4.2318 0.1044 0.0005 19 1 3.8176 -0.8143 -0.3877 20 6 5.5369 0.1255 0.5043 21 7 5.9246 1.1089 1.2759 22 14 6.7258 -1.2499 0.0755 23 1 6.0476 -2.2337 -0.8062 24 1 7.9041 -0.6839 -0.6293 25 1 7.1713 -1.9253 1.3207 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 0.2134 2.3131 -0.0005 30 1 1.3183 4.5043 -0.0011 31 1 5.2745 4.5612 1.6387 32 1 6.3577 6.7697 1.6242 33 1 5.6724 8.4738 -0.0002 34 1 1.5457 5.7898 -1.5978 35 1 2.7749 5.1827 -2.7501 36 1 1.6591 7.8662 -2.5706 37 1 2.8868 7.2618 -3.7226 38 1 3.9442 8.9695 -2.1080 39 1 5.1601 2.6120 -0.0118 40 1 6.8292 1.1233 1.6255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243852034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:52 Heat of formation + Delta-G solvation = 12.602891 kcal Electronic energy + Delta-G solvation = -23036.874905 eV Core-core repulsion = 19781.118315 eV Total energy + Delta-G solvation = -3255.756590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.91781 -38.56248 -36.47543 -35.46570 -33.71695 -31.78841 -29.77998 -29.39552 -28.76866 -27.23068 -26.33038 -25.07378 -22.68942 -21.68630 -21.11051 -20.48684 -19.71268 -17.53784 -16.72992 -16.25108 -15.52568 -15.28369 -15.06612 -14.95565 -14.64589 -14.50845 -13.79487 -13.49894 -13.10824 -12.74730 -12.54519 -12.33532 -12.01346 -11.83221 -11.74546 -11.63008 -11.47883 -11.21686 -11.12275 -10.95497 -10.78995 -10.53302 -10.39420 -10.01391 -9.73354 -9.61913 -9.39098 -9.12121 -8.14801 -7.46837 -6.99076 -6.83319 -6.59229 -4.20659 1.81632 2.11490 2.78857 2.99633 3.13487 3.19380 3.22884 3.65752 4.00723 4.35233 4.52261 4.68763 4.97043 5.10997 5.30419 5.46352 5.53980 5.62381 5.70127 5.76357 5.83926 5.88672 5.99287 5.99806 6.12651 6.17252 6.21068 6.31933 6.41722 6.54261 6.82784 6.90514 7.06816 7.07701 7.11690 7.22529 7.35651 7.45247 7.61337 7.71427 7.80330 8.04346 8.09088 8.22921 8.42217 8.72713 8.88530 9.08718 10.25679 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.005390 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.362005 B = 5193.479893 C = 6628.795269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.017 3.983 4 C -0.180 4.180 5 C -0.187 4.187 6 C -0.070 4.070 7 C 0.045 3.955 8 C -0.155 4.155 9 C -0.081 4.081 10 C -0.197 4.197 11 C 0.183 3.817 12 C -0.163 4.163 13 C -0.078 4.078 14 C 0.121 3.879 15 N -0.754 5.754 16 C -0.122 4.122 17 C 0.094 3.906 18 C -0.446 4.446 19 H 0.082 0.918 20 C 0.074 3.926 21 N -0.795 5.795 22 Si 0.906 3.094 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.275 1.275 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.405 0.595 39 H 0.129 0.871 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 9.019 -3.922 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.226 6.226 3 C -0.027 4.027 4 C -0.199 4.199 5 C -0.207 4.207 6 C -0.071 4.071 7 C 0.044 3.956 8 C -0.175 4.175 9 C -0.099 4.099 10 C -0.220 4.220 11 C 0.082 3.918 12 C -0.167 4.167 13 C -0.116 4.116 14 C -0.004 4.004 15 N -0.388 5.388 16 C -0.142 4.142 17 C 0.092 3.908 18 C -0.476 4.476 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.422 5.422 22 Si 0.731 3.269 23 H -0.184 1.184 24 H -0.198 1.198 25 H -0.201 1.201 26 H 0.099 0.901 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.147 0.853 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.242 0.758 39 H 0.147 0.853 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.389 8.891 -3.901 10.283 hybrid contribution 0.396 0.080 -0.135 0.426 sum -2.992 8.971 -4.036 10.282 Atomic orbital electron populations 1.22729 0.81796 1.01690 0.99907 1.85955 1.18176 1.28379 1.90121 1.19320 0.92385 0.82568 1.08473 1.20522 0.97322 0.92772 1.09320 1.20070 0.92858 0.95134 1.12641 1.18426 0.92774 0.90920 1.04968 1.18366 0.93177 0.92125 0.91904 1.21132 0.98260 0.97100 1.00982 1.20644 0.98681 0.93181 0.97411 1.20164 1.01674 1.00463 0.99686 1.18218 0.93569 0.90391 0.89612 1.19782 1.02146 0.93892 1.00922 1.20959 0.98727 0.95711 0.96172 1.21739 0.90556 0.92705 0.95363 1.44609 1.42265 1.15403 1.36543 1.21192 0.99449 0.89403 1.04141 1.16978 0.87272 0.93928 0.92645 1.19425 0.96513 0.96495 1.35122 0.89977 1.25865 0.98827 0.96853 0.92758 1.69827 1.18920 1.30671 1.22733 0.86284 0.80020 0.81349 0.79230 1.18426 1.19809 1.20093 0.90086 0.94149 0.94262 0.88563 0.89097 0.85349 0.86533 0.87501 0.90016 0.90033 0.92324 0.92266 0.75830 0.85336 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.81 101.05 0.99 1.58 16 2 O -0.31 -7.23 9.76 -18.48 -0.18 -7.41 16 3 C 0.02 0.42 6.72 -38.29 -0.26 0.16 16 4 C -0.18 -4.01 9.01 -39.56 -0.36 -4.37 16 5 C -0.19 -4.12 8.80 -39.02 -0.34 -4.47 16 6 C -0.07 -1.63 5.36 -104.95 -0.56 -2.19 16 7 C 0.04 0.93 5.46 -104.92 -0.57 0.36 16 8 C -0.16 -3.04 9.51 -39.23 -0.37 -3.41 16 9 C -0.08 -1.34 10.01 -39.76 -0.40 -1.73 16 10 C -0.20 -3.10 10.07 -39.12 -0.39 -3.49 16 11 C 0.18 3.01 7.03 -83.68 -0.59 2.42 16 12 C -0.16 -2.99 5.97 -103.94 -0.62 -3.61 16 13 C -0.08 -1.21 6.02 -27.25 -0.16 -1.38 16 14 C 0.12 1.48 7.96 -3.63 -0.03 1.45 16 15 N -0.75 -9.88 6.53 -58.13 -0.38 -10.26 16 16 C -0.12 -3.13 8.12 -38.58 -0.31 -3.45 16 17 C 0.09 2.53 5.58 -106.72 -0.60 1.94 16 18 C -0.45 -12.04 8.71 -37.83 -0.33 -12.37 16 19 H 0.08 2.22 7.64 -52.49 -0.40 1.82 16 20 C 0.07 1.87 5.14 -17.33 -0.09 1.78 16 21 N -0.80 -20.40 10.97 55.55 0.61 -19.79 16 22 Si 0.91 19.03 29.59 -169.99 -5.03 14.00 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 28 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 29 H 0.10 1.86 6.27 -52.48 -0.33 1.53 16 30 H 0.09 1.82 6.87 -52.49 -0.36 1.45 16 31 H 0.13 2.63 8.04 -52.48 -0.42 2.21 16 32 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.08 1.23 6.89 -51.93 -0.36 0.87 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.41 4.18 8.96 -40.82 -0.37 3.82 16 39 H 0.13 3.43 6.15 -52.48 -0.32 3.11 16 40 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 330.56 15.07 4.98 4.98 Total: -1.00 -29.18 330.56 -10.02 -39.20 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.02 Total: 10.04 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: -5.00 Total: -30.77 kcal Atomic # 7 Polarization: -30.27 SS G_CDS: 0.23 Total: -30.05 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.18 Total: -7.41 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.18 -10.02 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243852034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.805 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds