Wall clock time and date at job start Tue Mar 31 2020 06:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35596 * 117.00027 * 2 1 4 4 C 1.38510 * 120.08656 * 359.97438 * 3 2 1 5 5 C 1.38026 * 120.31497 * 180.02562 * 4 3 2 6 6 C 1.39933 * 120.46849 * 0.02610 * 5 4 3 7 7 C 1.48381 * 119.91830 * 179.97438 * 6 5 4 8 8 C 1.39388 * 120.04928 * 130.04148 * 7 6 5 9 9 C 1.38035 * 119.69099 * 179.97438 * 8 7 6 10 10 C 1.37960 * 120.37099 * 359.96620 * 9 8 7 11 11 C 1.39739 * 120.54124 * 0.02562 * 10 9 8 12 12 C 1.38426 * 119.09930 * 359.97438 * 11 10 9 13 13 C 1.51203 * 108.59238 * 179.97438 * 12 11 10 14 14 C 1.53752 * 104.52184 * 359.97438 * 13 12 11 15 15 N 1.39619 * 129.25324 * 179.97438 * 11 10 9 16 16 C 1.38611 * 120.15799 * 0.25082 * 6 5 4 17 17 C 1.40523 * 119.69024 * 359.47897 * 16 6 5 18 18 C 1.41189 * 120.23202 * 180.29604 * 17 16 6 19 19 H 1.08000 * 120.00017 * 204.82311 * 18 17 16 20 20 C 1.39915 * 119.99947 * 24.81547 * 18 17 16 21 21 N 1.30872 * 119.99684 * 17.63982 * 20 18 17 22 22 Si 1.86795 * 119.99879 * 197.63522 * 20 18 17 23 23 H 1.48502 * 109.47265 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.46813 * 120.00344 * 22 20 18 25 25 H 1.48497 * 109.47461 * 240.00356 * 22 20 18 26 26 H 1.09005 * 109.46978 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47457 * 300.00234 * 1 2 3 28 28 H 1.08997 * 109.46695 * 60.00747 * 1 2 3 29 29 H 1.08007 * 119.84352 * 0.02871 * 4 3 2 30 30 H 1.07996 * 119.76948 * 180.02562 * 5 4 3 31 31 H 1.08003 * 120.15754 * 359.96793 * 8 7 6 32 32 H 1.08001 * 119.81616 * 180.24208 * 9 8 7 33 33 H 1.08001 * 119.72330 * 179.97438 * 10 9 8 34 34 H 1.08992 * 110.42242 * 241.23667 * 13 12 11 35 35 H 1.08998 * 110.42386 * 118.75554 * 13 12 11 36 36 H 1.09006 * 110.30260 * 241.07893 * 14 13 12 37 37 H 1.09000 * 110.39114 * 118.96478 * 14 13 12 38 38 H 0.96993 * 124.96062 * 0.02562 * 15 11 10 39 39 H 1.08005 * 120.15803 * 179.72552 * 16 6 5 40 40 H 0.96997 * 119.99848 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2920 2.3710 -0.0005 5 6 1.9137 3.6033 -0.0011 6 6 3.3101 3.6935 -0.0016 7 6 3.9657 5.0246 -0.0028 8 6 4.9708 5.3084 0.9204 9 6 5.5761 6.5489 0.9124 10 6 5.1920 7.5065 -0.0035 11 6 4.1860 7.2355 -0.9347 12 6 3.5788 5.9915 -0.9269 13 6 2.5360 5.9571 -2.0212 14 6 2.6131 7.3484 -2.6711 15 7 3.6595 8.0593 -1.9314 16 6 4.0823 2.5424 -0.0069 17 6 3.4563 1.2843 -0.0006 18 6 4.2318 0.1044 0.0005 19 1 3.8176 -0.8143 -0.3877 20 6 5.5369 0.1255 0.5043 21 7 5.9246 1.1089 1.2759 22 14 6.7258 -1.2499 0.0755 23 1 6.0476 -2.2337 -0.8062 24 1 7.9041 -0.6839 -0.6293 25 1 7.1713 -1.9253 1.3207 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 0.2134 2.3131 -0.0005 30 1 1.3183 4.5043 -0.0011 31 1 5.2745 4.5612 1.6387 32 1 6.3577 6.7697 1.6242 33 1 5.6724 8.4738 -0.0002 34 1 1.5457 5.7898 -1.5978 35 1 2.7749 5.1827 -2.7501 36 1 1.6591 7.8662 -2.5706 37 1 2.8868 7.2618 -3.7226 38 1 3.9442 8.9695 -2.1080 39 1 5.1601 2.6120 -0.0118 40 1 6.8292 1.1233 1.6255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243852034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:51 Heat of formation + Delta-G solvation = -3.385193 kcal Electronic energy + Delta-G solvation = -23037.568200 eV Core-core repulsion = 19781.118315 eV Total energy + Delta-G solvation = -3256.449885 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23512 -40.27634 -38.06472 -36.87736 -35.55172 -33.24930 -31.61514 -30.81182 -30.01872 -28.70831 -27.88729 -26.91701 -24.02133 -23.12484 -22.69805 -21.93815 -21.28514 -19.29676 -18.34066 -17.83958 -17.11947 -16.49780 -16.45279 -16.31428 -16.21305 -16.12972 -15.37588 -14.85403 -14.71947 -14.47280 -14.19463 -13.59615 -13.49993 -13.32719 -13.17655 -12.92648 -12.83928 -12.79172 -12.76173 -12.54142 -12.27931 -12.18195 -12.04441 -11.60939 -11.36438 -11.20258 -11.01070 -10.85749 -9.60832 -9.36848 -8.69928 -8.41690 -8.13596 -6.19013 0.35342 0.74090 0.98662 1.22955 1.38527 1.51372 1.53917 2.24639 2.59435 2.72712 2.93941 3.04659 3.68773 3.83524 3.90800 4.12173 4.27137 4.33117 4.38740 4.44998 4.50926 4.54696 4.61478 4.72463 4.74454 4.75888 4.82304 5.00457 5.10139 5.13187 5.20294 5.26251 5.44724 5.46988 5.54637 5.69760 5.76975 5.86200 5.88006 5.93687 6.22441 6.33621 6.39478 6.53607 6.82918 6.95314 7.10795 7.25452 8.39996 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.005390 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.362005 B = 5193.479893 C = 6628.795269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.003 3.997 4 C -0.179 4.179 5 C -0.180 4.180 6 C -0.071 4.071 7 C 0.014 3.986 8 C -0.181 4.181 9 C -0.076 4.076 10 C -0.191 4.191 11 C 0.186 3.814 12 C -0.183 4.183 13 C -0.083 4.083 14 C 0.125 3.875 15 N -0.741 5.741 16 C -0.143 4.143 17 C 0.057 3.943 18 C -0.485 4.485 19 H 0.068 0.932 20 C 0.034 3.966 21 N -0.825 5.825 22 Si 0.977 3.023 23 H -0.262 1.262 24 H -0.264 1.264 25 H -0.265 1.265 26 H 0.110 0.890 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.422 0.578 39 H 0.106 0.894 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 11.391 -4.943 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.255 6.255 3 C -0.042 4.042 4 C -0.198 4.198 5 C -0.199 4.199 6 C -0.072 4.072 7 C 0.013 3.987 8 C -0.202 4.202 9 C -0.095 4.095 10 C -0.213 4.213 11 C 0.082 3.918 12 C -0.188 4.188 13 C -0.120 4.120 14 C 0.001 3.999 15 N -0.376 5.376 16 C -0.163 4.163 17 C 0.055 3.945 18 C -0.515 4.515 19 H 0.086 0.914 20 C -0.180 4.180 21 N -0.452 5.452 22 Si 0.798 3.202 23 H -0.186 1.186 24 H -0.189 1.189 25 H -0.190 1.190 26 H 0.129 0.871 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.262 0.738 39 H 0.124 0.876 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.207 11.301 -4.942 13.032 hybrid contribution 0.499 -0.505 0.167 0.730 sum -3.708 10.795 -4.775 12.373 Atomic orbital electron populations 1.23090 0.78605 1.04181 1.01025 1.85899 1.21546 1.27972 1.90126 1.19473 0.92191 0.83994 1.08505 1.20863 0.98941 0.91931 1.08084 1.20415 0.92662 0.96072 1.10793 1.18716 0.93440 0.91609 1.03390 1.18370 0.94578 0.91749 0.94004 1.21045 0.99494 0.98249 1.01375 1.20902 0.98608 0.91932 0.98010 1.20534 1.00953 1.01443 0.98417 1.18404 0.93150 0.90144 0.90054 1.20012 1.03341 0.94220 1.01186 1.21038 0.97947 0.97720 0.95276 1.21849 0.91594 0.90682 0.95813 1.44641 1.41798 1.15853 1.35269 1.21063 0.98689 0.90343 1.06158 1.17372 0.88928 0.94390 0.93834 1.19514 0.98219 0.96294 1.37432 0.91389 1.26647 0.99839 0.99386 0.92088 1.69889 1.19593 1.32327 1.23375 0.85235 0.77615 0.78163 0.79152 1.18580 1.18863 1.18993 0.87126 0.93159 0.92726 0.85228 0.86611 0.88008 0.83890 0.83977 0.89836 0.91264 0.89622 0.90254 0.73827 0.87571 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.81 113.37 1.11 1.96 16 2 O -0.34 -16.12 9.76 -89.06 -0.87 -16.99 16 3 C 0.00 0.15 6.72 23.11 0.16 0.31 16 4 C -0.18 -7.96 9.01 22.28 0.20 -7.76 16 5 C -0.18 -7.94 8.80 22.63 0.20 -7.74 16 6 C -0.07 -3.43 5.36 -20.08 -0.11 -3.54 16 7 C 0.01 0.58 5.46 -20.06 -0.11 0.47 16 8 C -0.18 -7.39 9.51 22.50 0.21 -7.18 16 9 C -0.08 -2.45 10.01 22.16 0.22 -2.22 16 10 C -0.19 -5.45 10.07 22.57 0.23 -5.22 16 11 C 0.19 5.61 7.03 38.31 0.27 5.88 16 12 C -0.18 -6.54 5.97 -19.42 -0.12 -6.66 16 13 C -0.08 -2.41 6.02 30.26 0.18 -2.22 16 14 C 0.12 2.57 7.96 86.63 0.69 3.26 16 15 N -0.74 -16.45 6.53 -337.82 -2.21 -18.66 16 16 C -0.14 -7.83 8.12 22.92 0.19 -7.64 16 17 C 0.06 3.25 5.58 -21.22 -0.12 3.14 16 18 C -0.48 -27.90 8.71 23.40 0.20 -27.69 16 19 H 0.07 3.93 7.64 -2.91 -0.02 3.91 16 20 C 0.03 1.82 5.14 85.24 0.44 2.26 16 21 N -0.83 -44.91 10.97 21.82 0.24 -44.67 16 22 Si 0.98 40.68 29.59 68.60 2.03 42.71 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 25 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 26 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 27 H 0.05 1.53 7.66 -2.39 -0.02 1.51 16 28 H 0.05 1.60 7.65 -2.39 -0.02 1.59 16 29 H 0.13 4.76 6.27 -2.91 -0.02 4.74 16 30 H 0.12 4.46 6.87 -2.91 -0.02 4.44 16 31 H 0.10 4.55 8.04 -2.91 -0.02 4.53 16 32 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 33 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.08 2.35 6.89 -2.39 -0.02 2.34 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 36 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.42 6.73 8.96 -92.71 -0.83 5.90 16 39 H 0.11 6.17 6.15 -2.91 -0.02 6.16 16 40 H 0.29 14.07 8.30 -92.71 -0.77 13.31 16 Total: -1.00 -68.31 330.56 3.28 -65.03 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.24 Total: 33.18 kcal Atomic # 6 Polarization: -64.45 SS G_CDS: 3.85 Total: -60.60 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -1.97 Total: -63.32 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.87 Total: -16.99 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -68.31 3.28 -65.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243852034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.640 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds