Wall clock time and date at job start Tue Mar 31 2020 06:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35606 * 117.00118 * 2 1 4 4 C 1.39148 * 119.88019 * 359.97438 * 3 2 1 5 5 C 1.36419 * 120.43583 * 180.02562 * 4 3 2 6 6 C 1.40907 * 120.18901 * 0.02562 * 5 4 3 7 7 C 1.41239 * 120.12004 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99840 * 24.61174 * 7 6 5 9 9 C 1.39862 * 120.00251 * 204.60304 * 7 6 5 10 10 N 1.30897 * 119.99897 * 17.98494 * 9 7 6 11 11 Si 1.86797 * 119.99989 * 197.98078 * 9 7 6 12 12 H 1.48496 * 109.47370 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47411 * 120.00403 * 11 9 7 14 14 H 1.48506 * 109.47203 * 239.99930 * 11 9 7 15 15 C 1.40618 * 119.76210 * 359.97438 * 6 5 4 16 16 C 1.38600 * 119.56943 * 359.72118 * 15 6 5 17 17 C 1.48341 * 120.09459 * 180.29296 * 16 15 6 18 18 C 1.39400 * 120.05284 * 65.28105 * 17 16 15 19 19 C 1.38028 * 119.69123 * 179.97438 * 18 17 16 20 20 C 1.37952 * 120.37528 * 359.97438 * 19 18 17 21 21 C 1.39745 * 120.54535 * 0.02562 * 20 19 18 22 22 C 1.38422 * 119.09354 * 359.71124 * 21 20 19 23 23 C 1.51200 * 108.59172 * 179.79739 * 22 21 20 24 24 C 1.53766 * 104.52047 * 0.37992 * 23 22 21 25 25 N 1.39618 * 129.25782 * 179.97438 * 21 20 19 26 26 H 1.09007 * 109.47114 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46488 * 60.00593 * 1 2 3 28 28 H 1.08992 * 109.47387 * 300.00106 * 1 2 3 29 29 H 1.08000 * 119.78183 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.90463 * 179.97438 * 5 4 3 31 31 H 0.96998 * 119.99829 * 180.02562 * 10 9 7 32 32 H 1.07992 * 120.21516 * 179.97438 * 15 6 5 33 33 H 1.08001 * 120.15257 * 359.97438 * 18 17 16 34 34 H 1.08003 * 119.81578 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.72506 * 180.02562 * 20 19 18 36 36 H 1.09002 * 110.61778 * 241.52636 * 23 22 21 37 37 H 1.09004 * 110.34090 * 119.09872 * 23 22 21 38 38 H 1.08998 * 110.30231 * 240.85094 * 24 23 22 39 39 H 1.08997 * 110.29991 * 118.69634 * 24 23 22 40 40 H 0.97000 * 124.95628 * 0.05176 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2844 2.3737 -0.0005 5 6 1.8919 3.5951 -0.0011 6 6 3.2980 3.6871 -0.0016 7 6 3.9255 4.9525 -0.0027 8 1 3.4037 5.8143 0.3864 9 6 5.2226 5.0894 -0.5075 10 7 5.7232 4.1635 -1.2857 11 14 6.2406 6.5936 -0.0713 12 1 5.4518 7.4846 0.8171 13 1 7.4787 6.1674 0.6290 14 1 6.6009 7.3246 -1.3128 15 6 4.0742 2.5146 -0.0011 16 6 3.4466 1.2788 0.0059 17 6 4.2541 0.0345 0.0131 18 6 5.0572 -0.2702 1.1110 19 6 5.8051 -1.4303 1.1100 20 6 5.7611 -2.2878 0.0303 21 6 4.9604 -1.9949 -1.0770 22 6 4.2061 -0.8343 -1.0740 23 6 3.4422 -0.7525 -2.3763 24 6 3.8428 -2.0262 -3.1389 25 7 4.7801 -2.7234 -2.2543 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 0.5138 0.8899 29 1 0.2062 2.3108 -0.0005 30 1 1.2935 4.4941 -0.0019 31 1 6.6229 4.2583 -1.6355 32 1 5.1524 2.5766 -0.0019 33 1 5.0941 0.3984 1.9584 34 1 6.4284 -1.6681 1.9594 35 1 6.3503 -3.1928 0.0408 36 1 3.7346 0.1348 -2.9378 37 1 2.3689 -0.7447 -2.1862 38 1 4.3306 -1.7668 -4.0785 39 1 2.9663 -2.6467 -3.3255 40 1 5.2120 -3.5680 -2.4570 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243852687.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:22 Heat of formation + Delta-G solvation = 13.731383 kcal Electronic energy + Delta-G solvation = -23457.438987 eV Core-core repulsion = 20201.731332 eV Total energy + Delta-G solvation = -3255.707655 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.86420 -38.58818 -36.42080 -35.65145 -33.37359 -32.12649 -29.68705 -29.09520 -28.72214 -27.47614 -26.70338 -24.60348 -22.75218 -21.74321 -20.85223 -20.48679 -19.81935 -17.52372 -16.82998 -16.27764 -15.41049 -15.21383 -15.05755 -14.94153 -14.76987 -14.61622 -13.75239 -13.45298 -13.07751 -12.69006 -12.56184 -12.14364 -12.06876 -11.87497 -11.64247 -11.60507 -11.50691 -11.25281 -11.04247 -10.93143 -10.73663 -10.61095 -10.50600 -9.97134 -9.82969 -9.59036 -9.35576 -9.00432 -8.10266 -7.39518 -6.99408 -6.84767 -6.68772 -4.23618 1.97166 2.19077 2.78352 2.90510 3.11195 3.15848 3.21085 3.75807 3.97583 4.35572 4.43448 4.61633 5.10136 5.24093 5.45012 5.53315 5.55083 5.64184 5.66188 5.73200 5.78262 5.88083 5.97954 6.08874 6.12086 6.15858 6.37468 6.40975 6.55915 6.69971 6.91716 6.97188 7.05189 7.11506 7.16771 7.20032 7.35420 7.44214 7.53490 7.71591 7.80657 7.99752 8.18499 8.21008 8.47043 8.64953 8.91433 8.97639 10.24473 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.005740 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.169826 B = 4877.068430 C = 5873.171497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.321 6.321 3 C 0.014 3.986 4 C -0.171 4.171 5 C -0.190 4.190 6 C 0.086 3.914 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.796 5.796 11 Si 0.904 3.096 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.276 1.276 15 C -0.112 4.112 16 C -0.065 4.065 17 C 0.054 3.946 18 C -0.161 4.161 19 C -0.083 4.083 20 C -0.196 4.196 21 C 0.183 3.817 22 C -0.140 4.140 23 C -0.080 4.080 24 C 0.122 3.878 25 N -0.753 5.753 26 H 0.080 0.920 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.279 0.721 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.090 -9.959 -0.904 10.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.236 6.236 3 C -0.030 4.030 4 C -0.190 4.190 5 C -0.210 4.210 6 C 0.083 3.917 7 C -0.493 4.493 8 H 0.095 0.905 9 C -0.141 4.141 10 N -0.422 5.422 11 Si 0.729 3.271 12 H -0.185 1.185 13 H -0.197 1.197 14 H -0.201 1.201 15 C -0.132 4.132 16 C -0.066 4.066 17 C 0.054 3.946 18 C -0.180 4.180 19 C -0.101 4.101 20 C -0.219 4.219 21 C 0.082 3.918 22 C -0.145 4.145 23 C -0.117 4.117 24 C -0.002 4.002 25 N -0.387 5.387 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.879 -10.176 -1.194 10.417 hybrid contribution 0.410 0.516 -0.051 0.661 sum -1.468 -9.660 -1.244 9.850 Atomic orbital electron populations 1.22705 0.81409 1.01587 1.00215 1.85906 1.18613 1.28257 1.90822 1.18490 0.90669 0.82962 1.10854 1.20344 0.97336 0.92893 1.08384 1.20604 0.94833 0.95082 1.10451 1.17501 0.90550 0.93322 0.90281 1.19447 0.98515 0.94949 1.36430 0.90522 1.25847 0.97988 0.97616 0.92689 1.69841 1.16262 1.33511 1.22601 0.86331 0.79923 0.81664 0.79217 1.18505 1.19746 1.20136 1.21296 0.99964 0.89067 1.02837 1.17893 0.88856 0.92327 1.07515 1.18099 0.93153 0.92053 0.91322 1.20933 1.00142 0.98202 0.98761 1.20550 0.98414 0.94131 0.97043 1.20127 1.05192 1.02199 0.94369 1.18225 0.94727 0.91499 0.87361 1.19702 1.02161 0.95693 0.96898 1.20935 1.00835 0.96793 0.93122 1.21731 0.91942 0.93381 0.93175 1.44597 1.51690 1.25226 1.17214 0.90199 0.94036 0.94039 0.88562 0.88736 0.90982 0.85317 0.86329 0.86672 0.87548 0.90123 0.89628 0.92335 0.92418 0.75913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.80 101.05 0.99 1.56 16 2 O -0.32 -6.47 8.71 -18.51 -0.16 -6.63 16 3 C 0.01 0.31 6.62 -38.44 -0.25 0.06 16 4 C -0.17 -3.78 8.95 -39.90 -0.36 -4.13 16 5 C -0.19 -4.57 9.72 -39.23 -0.38 -4.95 16 6 C 0.09 2.24 5.57 -106.85 -0.60 1.65 16 7 C -0.46 -12.13 9.04 -37.83 -0.34 -12.47 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 10 N -0.80 -20.55 10.96 55.54 0.61 -19.94 16 11 Si 0.90 18.69 29.60 -169.99 -5.03 13.66 16 12 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 13 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 14 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 15 C -0.11 -2.89 8.37 -38.55 -0.32 -3.21 16 16 C -0.07 -1.54 5.10 -104.80 -0.53 -2.07 16 17 C 0.05 1.18 4.94 -104.93 -0.52 0.66 16 18 C -0.16 -3.16 9.75 -39.23 -0.38 -3.54 16 19 C -0.08 -1.40 10.00 -39.76 -0.40 -1.79 16 20 C -0.20 -3.22 10.07 -39.12 -0.39 -3.61 16 21 C 0.18 3.21 7.03 -83.68 -0.59 2.63 16 22 C -0.14 -2.78 5.76 -103.93 -0.60 -3.38 16 23 C -0.08 -1.40 6.58 -27.24 -0.18 -1.58 16 24 C 0.12 1.69 7.96 -3.63 -0.03 1.66 16 25 N -0.75 -10.76 6.53 -58.13 -0.38 -11.14 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.60 7.65 -51.93 -0.40 0.21 16 28 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 29 H 0.10 1.85 6.26 -52.49 -0.33 1.52 16 30 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 31 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 32 H 0.13 3.47 6.16 -52.49 -0.32 3.15 16 33 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 34 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.09 1.53 7.18 -51.93 -0.37 1.15 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.40 4.57 8.96 -40.82 -0.37 4.21 16 LS Contribution 332.35 15.07 5.01 5.01 Total: -1.00 -28.86 332.35 -10.04 -38.90 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.12 Total: 10.88 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -4.97 Total: -30.73 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.23 Total: -31.09 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.16 Total: -6.63 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.86 -10.04 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243852687.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.633 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds