Wall clock time and date at job start Tue Mar 31 2020 06:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35606 * 117.00118 * 2 1 4 4 C 1.39148 * 119.88019 * 359.97438 * 3 2 1 5 5 C 1.36419 * 120.43583 * 180.02562 * 4 3 2 6 6 C 1.40907 * 120.18901 * 0.02562 * 5 4 3 7 7 C 1.41239 * 120.12004 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99840 * 24.61174 * 7 6 5 9 9 C 1.39862 * 120.00251 * 204.60304 * 7 6 5 10 10 N 1.30897 * 119.99897 * 17.98494 * 9 7 6 11 11 Si 1.86797 * 119.99989 * 197.98078 * 9 7 6 12 12 H 1.48496 * 109.47370 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47411 * 120.00403 * 11 9 7 14 14 H 1.48506 * 109.47203 * 239.99930 * 11 9 7 15 15 C 1.40618 * 119.76210 * 359.97438 * 6 5 4 16 16 C 1.38600 * 119.56943 * 359.72118 * 15 6 5 17 17 C 1.48341 * 120.09459 * 180.29296 * 16 15 6 18 18 C 1.39400 * 120.05284 * 65.28105 * 17 16 15 19 19 C 1.38028 * 119.69123 * 179.97438 * 18 17 16 20 20 C 1.37952 * 120.37528 * 359.97438 * 19 18 17 21 21 C 1.39745 * 120.54535 * 0.02562 * 20 19 18 22 22 C 1.38422 * 119.09354 * 359.71124 * 21 20 19 23 23 C 1.51200 * 108.59172 * 179.79739 * 22 21 20 24 24 C 1.53766 * 104.52047 * 0.37992 * 23 22 21 25 25 N 1.39618 * 129.25782 * 179.97438 * 21 20 19 26 26 H 1.09007 * 109.47114 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46488 * 60.00593 * 1 2 3 28 28 H 1.08992 * 109.47387 * 300.00106 * 1 2 3 29 29 H 1.08000 * 119.78183 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.90463 * 179.97438 * 5 4 3 31 31 H 0.96998 * 119.99829 * 180.02562 * 10 9 7 32 32 H 1.07992 * 120.21516 * 179.97438 * 15 6 5 33 33 H 1.08001 * 120.15257 * 359.97438 * 18 17 16 34 34 H 1.08003 * 119.81578 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.72506 * 180.02562 * 20 19 18 36 36 H 1.09002 * 110.61778 * 241.52636 * 23 22 21 37 37 H 1.09004 * 110.34090 * 119.09872 * 23 22 21 38 38 H 1.08998 * 110.30231 * 240.85094 * 24 23 22 39 39 H 1.08997 * 110.29991 * 118.69634 * 24 23 22 40 40 H 0.97000 * 124.95628 * 0.05176 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2844 2.3737 -0.0005 5 6 1.8919 3.5951 -0.0011 6 6 3.2980 3.6871 -0.0016 7 6 3.9255 4.9525 -0.0027 8 1 3.4037 5.8143 0.3864 9 6 5.2226 5.0894 -0.5075 10 7 5.7232 4.1635 -1.2857 11 14 6.2406 6.5936 -0.0713 12 1 5.4518 7.4846 0.8171 13 1 7.4787 6.1674 0.6290 14 1 6.6009 7.3246 -1.3128 15 6 4.0742 2.5146 -0.0011 16 6 3.4466 1.2788 0.0059 17 6 4.2541 0.0345 0.0131 18 6 5.0572 -0.2702 1.1110 19 6 5.8051 -1.4303 1.1100 20 6 5.7611 -2.2878 0.0303 21 6 4.9604 -1.9949 -1.0770 22 6 4.2061 -0.8343 -1.0740 23 6 3.4422 -0.7525 -2.3763 24 6 3.8428 -2.0262 -3.1389 25 7 4.7801 -2.7234 -2.2543 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 0.5138 0.8899 29 1 0.2062 2.3108 -0.0005 30 1 1.2935 4.4941 -0.0019 31 1 6.6229 4.2583 -1.6355 32 1 5.1524 2.5766 -0.0019 33 1 5.0941 0.3984 1.9584 34 1 6.4284 -1.6681 1.9594 35 1 6.3503 -3.1928 0.0408 36 1 3.7346 0.1348 -2.9378 37 1 2.3689 -0.7447 -2.1862 38 1 4.3306 -1.7668 -4.0785 39 1 2.9663 -2.6467 -3.3255 40 1 5.2120 -3.5680 -2.4570 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243852687.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:21 Heat of formation + Delta-G solvation = -1.561036 kcal Electronic energy + Delta-G solvation = -23458.102116 eV Core-core repulsion = 20201.731332 eV Total energy + Delta-G solvation = -3256.370784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.27895 -40.19277 -38.10100 -37.04245 -35.19515 -33.66876 -31.18040 -30.94012 -30.04758 -28.89971 -28.20770 -26.40255 -24.22490 -23.11479 -22.50411 -22.02064 -21.40038 -19.24059 -18.51287 -17.76181 -17.09015 -16.57201 -16.46077 -16.32784 -16.24367 -16.12619 -15.38626 -14.85274 -14.77842 -14.30771 -14.09941 -13.79715 -13.51429 -13.32758 -13.18197 -12.92933 -12.88025 -12.83082 -12.70290 -12.43212 -12.32656 -12.24175 -11.96497 -11.72315 -11.54013 -11.07596 -10.90411 -10.83472 -9.67409 -9.15469 -8.80378 -8.54195 -8.13283 -6.19417 0.48134 0.76957 1.02427 1.08361 1.39515 1.51218 1.54497 2.23756 2.59675 2.72948 2.85866 3.03394 3.69922 3.83409 3.91167 4.09915 4.28394 4.31552 4.33995 4.46738 4.50858 4.56209 4.66747 4.70144 4.75540 4.78908 4.82388 5.07275 5.09806 5.12104 5.24329 5.28615 5.32018 5.51619 5.58654 5.61172 5.73614 5.84083 5.89383 5.94925 6.10867 6.30709 6.39674 6.60787 6.85329 6.98632 7.12232 7.13816 8.39894 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.005740 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.169826 B = 4877.068430 C = 5873.171497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.331 6.331 3 C 0.022 3.978 4 C -0.171 4.171 5 C -0.203 4.203 6 C 0.054 3.946 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.035 3.965 10 N -0.830 5.830 11 Si 0.977 3.023 12 H -0.258 1.258 13 H -0.267 1.267 14 H -0.267 1.267 15 C -0.133 4.133 16 C -0.071 4.071 17 C 0.022 3.978 18 C -0.186 4.186 19 C -0.075 4.075 20 C -0.192 4.192 21 C 0.184 3.816 22 C -0.170 4.170 23 C -0.081 4.081 24 C 0.128 3.872 25 N -0.740 5.740 26 H 0.112 0.888 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.284 0.716 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -12.216 -1.204 12.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.246 6.246 3 C -0.023 4.023 4 C -0.190 4.190 5 C -0.222 4.222 6 C 0.052 3.948 7 C -0.529 4.529 8 H 0.093 0.907 9 C -0.179 4.179 10 N -0.457 5.457 11 Si 0.798 3.202 12 H -0.181 1.181 13 H -0.192 1.192 14 H -0.192 1.192 15 C -0.153 4.153 16 C -0.071 4.071 17 C 0.021 3.979 18 C -0.207 4.207 19 C -0.094 4.094 20 C -0.215 4.215 21 C 0.080 3.920 22 C -0.175 4.175 23 C -0.119 4.119 24 C 0.004 3.996 25 N -0.375 5.375 26 H 0.131 0.869 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -1.958 -12.472 -1.516 12.716 hybrid contribution 0.301 1.019 0.031 1.063 sum -1.658 -11.453 -1.485 11.668 Atomic orbital electron populations 1.23068 0.78652 1.04136 1.01008 1.85898 1.21402 1.26853 1.90445 1.18609 0.90628 0.84028 1.08987 1.20651 0.99042 0.92032 1.07231 1.20806 0.94283 0.96408 1.10751 1.17846 0.91818 0.93748 0.91393 1.19672 1.00001 0.95071 1.38166 0.90723 1.26668 0.98575 1.00682 0.91956 1.69922 1.16783 1.35479 1.23505 0.85238 0.78047 0.77798 0.79105 1.18107 1.19192 1.19203 1.21124 0.98921 0.90195 1.05055 1.18164 0.90086 0.92720 1.06177 1.18216 0.94491 0.92018 0.93140 1.21018 1.01460 0.99743 0.98433 1.20899 0.97456 0.92698 0.98321 1.20539 1.04545 1.03035 0.93371 1.18432 0.94013 0.90961 0.88572 1.19929 1.03678 0.96640 0.97238 1.20932 1.00210 0.98018 0.92703 1.21783 0.93083 0.91837 0.92916 1.44588 1.51417 1.25535 1.15974 0.86928 0.93094 0.93225 0.85291 0.87798 0.90525 0.87670 0.87355 0.83353 0.83911 0.92548 0.90408 0.90524 0.89688 0.73783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.80 113.37 1.11 1.86 16 2 O -0.33 -13.12 8.71 -89.16 -0.78 -13.90 16 3 C 0.02 0.99 6.62 23.01 0.15 1.15 16 4 C -0.17 -7.61 8.95 22.06 0.20 -7.41 16 5 C -0.20 -10.09 9.72 22.50 0.22 -9.87 16 6 C 0.05 2.99 5.57 -21.31 -0.12 2.87 16 7 C -0.50 -27.53 9.04 23.40 0.21 -27.32 16 8 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 9 C 0.03 1.81 5.13 85.23 0.44 2.25 16 10 N -0.83 -45.09 10.96 21.81 0.24 -44.85 16 11 Si 0.98 39.53 29.60 68.60 2.03 41.56 16 12 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 13 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 14 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 15 C -0.13 -7.32 8.37 22.94 0.19 -7.13 16 16 C -0.07 -3.50 5.10 -19.98 -0.10 -3.60 16 17 C 0.02 0.98 4.94 -20.07 -0.10 0.88 16 18 C -0.19 -7.52 9.75 22.50 0.22 -7.30 16 19 C -0.08 -2.43 10.00 22.15 0.22 -2.20 16 20 C -0.19 -5.77 10.07 22.57 0.23 -5.54 16 21 C 0.18 6.07 7.03 38.31 0.27 6.34 16 22 C -0.17 -6.76 5.76 -19.42 -0.11 -6.87 16 23 C -0.08 -2.85 6.58 30.26 0.20 -2.65 16 24 C 0.13 3.21 7.96 86.63 0.69 3.90 16 25 N -0.74 -18.80 6.53 -337.83 -2.21 -21.00 16 26 H 0.11 2.47 8.14 -2.38 -0.02 2.45 16 27 H 0.05 1.36 7.65 -2.39 -0.02 1.34 16 28 H 0.05 1.34 7.65 -2.39 -0.02 1.32 16 29 H 0.13 4.76 6.26 -2.91 -0.02 4.74 16 30 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 31 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 32 H 0.11 6.16 6.16 -2.91 -0.02 6.14 16 33 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 34 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.08 2.77 7.18 -2.39 -0.02 2.75 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.42 7.81 8.96 -92.71 -0.83 6.98 16 Total: -1.00 -66.55 332.35 3.44 -63.12 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.24 Total: 35.73 kcal Atomic # 6 Polarization: -64.57 SS G_CDS: 3.92 Total: -60.65 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -1.97 Total: -65.85 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.78 Total: -13.90 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -66.55 3.44 -63.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243852687.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.555 kcal (2) G-P(sol) polarization free energy of solvation -66.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds