Wall clock time and date at job start Tue Mar 31 2020 06:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35872 * 117.00093 * 2 1 4 4 C 1.39464 * 119.77855 * 359.97438 * 3 2 1 5 5 C 1.37950 * 120.61754 * 180.02562 * 4 3 2 6 6 C 1.39175 * 120.16484 * 359.97438 * 5 4 3 7 7 C 1.47844 * 120.21696 * 180.02562 * 6 5 4 8 8 C 1.39703 * 120.08298 * 65.00172 * 7 6 5 9 9 C 1.37940 * 119.65604 * 179.97438 * 8 7 6 10 10 C 1.38022 * 120.40790 * 359.97299 * 9 8 7 11 11 C 1.39823 * 120.60241 * 0.02562 * 10 9 8 12 12 C 1.38323 * 119.11347 * 0.02562 * 11 10 9 13 13 C 1.51204 * 108.61543 * 179.97438 * 12 11 10 14 14 C 1.53756 * 104.51437 * 359.75903 * 13 12 11 15 15 N 1.39635 * 129.23480 * 180.02562 * 11 10 9 16 16 C 1.41892 * 119.55820 * 0.27433 * 6 5 4 17 17 C 1.40898 * 120.29669 * 179.72637 * 16 6 5 18 18 H 1.08001 * 120.00107 * 24.87538 * 17 16 6 19 19 C 1.40046 * 119.99730 * 204.88384 * 17 16 6 20 20 N 1.30780 * 120.00246 * 17.34793 * 19 17 16 21 21 Si 1.86805 * 119.99702 * 197.34871 * 19 17 16 22 22 H 1.48500 * 109.47256 * 59.99541 * 21 19 17 23 23 H 1.48498 * 109.46897 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47133 * 299.99721 * 21 19 17 25 25 C 1.37933 * 119.78157 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.46606 * 60.00113 * 1 2 3 27 27 H 1.08995 * 109.47174 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46721 * 300.00540 * 1 2 3 29 29 H 1.08002 * 119.69440 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.92313 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.16994 * 359.94987 * 8 7 6 32 32 H 1.08001 * 119.79405 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.69590 * 180.02562 * 10 9 8 34 34 H 1.09003 * 110.42351 * 118.75954 * 13 12 11 35 35 H 1.08999 * 110.42929 * 241.24220 * 13 12 11 36 36 H 1.08997 * 110.42627 * 241.40868 * 14 13 12 37 37 H 1.09001 * 110.19516 * 119.23353 * 14 13 12 38 38 H 0.97007 * 124.95692 * 0.02562 * 15 11 10 39 39 H 0.97003 * 119.99793 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.08985 * 359.97421 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2818 2.3773 -0.0005 5 6 1.8901 3.6155 -0.0011 6 6 3.2784 3.7127 -0.0006 7 6 3.9315 5.0390 -0.0006 8 6 3.7821 5.8932 1.0948 9 6 4.3957 7.1285 1.0857 10 6 5.1550 7.5235 0.0029 11 6 5.3138 6.6798 -1.1007 12 6 4.6988 5.4408 -1.0948 13 6 5.0248 4.7338 -2.3910 14 6 5.9094 5.7285 -3.1605 15 7 6.0331 6.8922 -2.2786 16 6 4.0628 2.5303 -0.0054 17 6 5.4695 2.6105 -0.0107 18 1 5.9619 3.4879 0.3821 19 6 6.2292 1.5527 -0.5256 20 7 5.6670 0.6586 -1.2968 21 14 8.0457 1.4189 -0.1107 22 1 8.2098 1.2959 1.3601 23 1 8.6179 0.2198 -0.7741 24 1 8.7533 2.6342 -0.5878 25 6 3.4236 1.2775 -0.0005 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2039 2.3109 -0.0005 30 1 1.2875 4.5117 -0.0019 31 1 3.1889 5.5879 1.9441 32 1 4.2814 7.7908 1.9312 33 1 5.6306 8.4930 0.0081 34 1 5.5680 3.8095 -2.1939 35 1 4.1132 4.5282 -2.9520 36 1 5.4337 6.0136 -4.0989 37 1 6.8899 5.2917 -3.3498 38 1 6.5375 7.6948 -2.4847 39 1 6.1932 -0.0743 -1.6531 40 1 4.0098 0.3705 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243856605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:55 Heat of formation + Delta-G solvation = 10.676605 kcal Electronic energy + Delta-G solvation = -23534.361289 eV Core-core repulsion = 20278.521169 eV Total energy + Delta-G solvation = -3255.840120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.66037 -38.60897 -36.55579 -35.35608 -33.56187 -31.64981 -29.72217 -29.12763 -28.56773 -27.66374 -25.99517 -25.13234 -22.44361 -21.57317 -20.88669 -20.44523 -19.54883 -17.69124 -16.65406 -16.10656 -15.18061 -15.16740 -14.89443 -14.81467 -14.79493 -14.67405 -13.79912 -13.33037 -13.11845 -12.81219 -12.40831 -12.10743 -11.87013 -11.67446 -11.44831 -11.35167 -11.34330 -11.24866 -11.10445 -11.08257 -10.75226 -10.61015 -10.29097 -9.90907 -9.67221 -9.56857 -9.39576 -9.13128 -7.78587 -7.48494 -6.92808 -6.72798 -6.62534 -4.40989 2.12438 2.33226 2.77603 3.02493 3.05065 3.08737 3.22090 3.89994 3.91793 4.33384 4.54748 4.63146 5.32820 5.45157 5.58097 5.65972 5.67556 5.71832 5.74979 5.77527 5.91803 5.98145 6.15162 6.18567 6.23644 6.32308 6.38563 6.65430 6.74125 6.86548 7.00370 7.03596 7.10107 7.21531 7.22660 7.35092 7.43643 7.56732 7.72633 7.77268 7.91196 8.04245 8.07721 8.34397 8.38779 8.75202 8.84109 8.93104 10.10713 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.011632 B = 0.007178 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.504053 B = 3899.804414 C = 5343.990384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C 0.132 3.868 4 C -0.319 4.319 5 C -0.041 4.041 6 C -0.203 4.203 7 C 0.074 3.926 8 C -0.173 4.173 9 C -0.086 4.086 10 C -0.204 4.204 11 C 0.181 3.819 12 C -0.137 4.137 13 C -0.083 4.083 14 C 0.120 3.880 15 N -0.754 5.754 16 C 0.158 3.842 17 C -0.439 4.439 18 H 0.083 0.917 19 C 0.079 3.921 20 N -0.778 5.778 21 Si 0.900 3.100 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.196 4.196 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.402 0.598 39 H 0.283 0.717 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 5.925 -1.154 6.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.245 6.245 3 C 0.088 3.912 4 C -0.339 4.339 5 C -0.060 4.060 6 C -0.204 4.204 7 C 0.073 3.927 8 C -0.193 4.193 9 C -0.104 4.104 10 C -0.227 4.227 11 C 0.080 3.920 12 C -0.141 4.141 13 C -0.120 4.120 14 C -0.004 4.004 15 N -0.388 5.388 16 C 0.155 3.845 17 C -0.468 4.468 18 H 0.101 0.899 19 C -0.141 4.141 20 N -0.402 5.402 21 Si 0.724 3.276 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.216 4.216 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.238 0.762 39 H 0.094 0.906 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.995 5.436 -1.456 5.715 hybrid contribution 0.773 0.411 -0.018 0.875 sum -0.222 5.847 -1.475 6.034 Atomic orbital electron populations 1.22745 0.80844 1.01775 1.00499 1.86000 1.19452 1.29220 1.89811 1.18996 0.92468 0.82408 0.97313 1.20327 0.97229 0.92495 1.23844 1.20296 0.93273 0.95173 0.97217 1.18545 0.92005 0.91219 1.18652 1.18037 0.92020 0.92211 0.90426 1.21001 1.04753 0.94765 0.98804 1.20495 0.96978 0.96148 0.96807 1.20093 1.08005 0.99893 0.94677 1.18287 0.92130 0.94276 0.87317 1.19860 1.02880 0.94185 0.97183 1.21045 0.99398 0.98942 0.92568 1.21776 0.99430 0.86257 0.92981 1.44637 1.57066 1.19707 1.17372 1.17148 0.92628 0.88700 0.86064 1.19457 0.90969 1.02107 1.34268 0.89908 1.25942 1.00972 0.94449 0.92767 1.69818 1.38516 1.10669 1.21227 0.86476 0.82221 0.78591 0.80265 1.18651 1.20283 1.18884 1.20531 0.89319 0.99124 1.12647 0.93693 0.89999 0.93735 0.88731 0.89012 0.86819 0.87128 0.87914 0.87589 0.90982 0.92775 0.92453 0.76165 0.90600 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.80 101.05 0.99 1.59 16 2 O -0.33 -7.27 10.48 -19.34 -0.20 -7.47 16 3 C 0.13 3.17 6.67 -39.24 -0.26 2.91 16 4 C -0.32 -7.11 9.02 -39.23 -0.35 -7.46 16 5 C -0.04 -0.92 9.71 -39.34 -0.38 -1.30 16 6 C -0.20 -4.78 5.14 -104.22 -0.54 -5.32 16 7 C 0.07 1.60 4.37 -104.93 -0.46 1.14 16 8 C -0.17 -3.37 9.76 -39.14 -0.38 -3.76 16 9 C -0.09 -1.46 10.00 -39.77 -0.40 -1.86 16 10 C -0.20 -3.48 10.07 -39.07 -0.39 -3.87 16 11 C 0.18 3.35 7.03 -83.68 -0.59 2.76 16 12 C -0.14 -2.83 5.30 -103.85 -0.55 -3.38 16 13 C -0.08 -1.61 6.41 -27.24 -0.17 -1.79 16 14 C 0.12 1.89 7.97 -3.63 -0.03 1.86 16 15 N -0.75 -11.80 6.53 -58.13 -0.38 -12.18 16 16 C 0.16 4.01 5.53 -106.59 -0.59 3.43 16 17 C -0.44 -11.01 6.23 -37.90 -0.24 -11.25 16 18 H 0.08 2.11 7.05 -52.49 -0.37 1.74 16 19 C 0.08 1.88 5.14 -17.32 -0.09 1.79 16 20 N -0.78 -19.19 10.96 55.55 0.61 -18.58 16 21 Si 0.90 18.35 29.59 -169.99 -5.03 13.32 16 22 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 25 C -0.20 -5.10 8.60 -38.79 -0.33 -5.44 16 26 H 0.04 0.69 7.64 -51.93 -0.40 0.30 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.67 7.65 -51.93 -0.40 0.28 16 29 H 0.09 1.86 6.25 -52.49 -0.33 1.53 16 30 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.11 2.33 6.46 -51.93 -0.34 2.00 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.40 5.06 8.96 -40.82 -0.37 4.70 16 39 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 40 H 0.13 3.44 6.18 -52.49 -0.32 3.11 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -27.70 328.94 -9.85 -37.55 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -4.77 Total: -29.95 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.23 Total: -30.76 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.20 Total: -7.47 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.70 -9.85 -37.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243856605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.222 kcal (2) G-P(sol) polarization free energy of solvation -27.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds