Wall clock time and date at job start Tue Mar 31 2020 06:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35872 * 117.00093 * 2 1 4 4 C 1.39464 * 119.77855 * 359.97438 * 3 2 1 5 5 C 1.37950 * 120.61754 * 180.02562 * 4 3 2 6 6 C 1.39175 * 120.16484 * 359.97438 * 5 4 3 7 7 C 1.47844 * 120.21696 * 180.02562 * 6 5 4 8 8 C 1.39703 * 120.08298 * 65.00172 * 7 6 5 9 9 C 1.37940 * 119.65604 * 179.97438 * 8 7 6 10 10 C 1.38022 * 120.40790 * 359.97299 * 9 8 7 11 11 C 1.39823 * 120.60241 * 0.02562 * 10 9 8 12 12 C 1.38323 * 119.11347 * 0.02562 * 11 10 9 13 13 C 1.51204 * 108.61543 * 179.97438 * 12 11 10 14 14 C 1.53756 * 104.51437 * 359.75903 * 13 12 11 15 15 N 1.39635 * 129.23480 * 180.02562 * 11 10 9 16 16 C 1.41892 * 119.55820 * 0.27433 * 6 5 4 17 17 C 1.40898 * 120.29669 * 179.72637 * 16 6 5 18 18 H 1.08001 * 120.00107 * 24.87538 * 17 16 6 19 19 C 1.40046 * 119.99730 * 204.88384 * 17 16 6 20 20 N 1.30780 * 120.00246 * 17.34793 * 19 17 16 21 21 Si 1.86805 * 119.99702 * 197.34871 * 19 17 16 22 22 H 1.48500 * 109.47256 * 59.99541 * 21 19 17 23 23 H 1.48498 * 109.46897 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47133 * 299.99721 * 21 19 17 25 25 C 1.37933 * 119.78157 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.46606 * 60.00113 * 1 2 3 27 27 H 1.08995 * 109.47174 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46721 * 300.00540 * 1 2 3 29 29 H 1.08002 * 119.69440 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.92313 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.16994 * 359.94987 * 8 7 6 32 32 H 1.08001 * 119.79405 * 179.97438 * 9 8 7 33 33 H 1.07997 * 119.69590 * 180.02562 * 10 9 8 34 34 H 1.09003 * 110.42351 * 118.75954 * 13 12 11 35 35 H 1.08999 * 110.42929 * 241.24220 * 13 12 11 36 36 H 1.08997 * 110.42627 * 241.40868 * 14 13 12 37 37 H 1.09001 * 110.19516 * 119.23353 * 14 13 12 38 38 H 0.97007 * 124.95692 * 0.02562 * 15 11 10 39 39 H 0.97003 * 119.99793 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.08985 * 359.97421 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2818 2.3773 -0.0005 5 6 1.8901 3.6155 -0.0011 6 6 3.2784 3.7127 -0.0006 7 6 3.9315 5.0390 -0.0006 8 6 3.7821 5.8932 1.0948 9 6 4.3957 7.1285 1.0857 10 6 5.1550 7.5235 0.0029 11 6 5.3138 6.6798 -1.1007 12 6 4.6988 5.4408 -1.0948 13 6 5.0248 4.7338 -2.3910 14 6 5.9094 5.7285 -3.1605 15 7 6.0331 6.8922 -2.2786 16 6 4.0628 2.5303 -0.0054 17 6 5.4695 2.6105 -0.0107 18 1 5.9619 3.4879 0.3821 19 6 6.2292 1.5527 -0.5256 20 7 5.6670 0.6586 -1.2968 21 14 8.0457 1.4189 -0.1107 22 1 8.2098 1.2959 1.3601 23 1 8.6179 0.2198 -0.7741 24 1 8.7533 2.6342 -0.5878 25 6 3.4236 1.2775 -0.0005 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2039 2.3109 -0.0005 30 1 1.2875 4.5117 -0.0019 31 1 3.1889 5.5879 1.9441 32 1 4.2814 7.7908 1.9312 33 1 5.6306 8.4930 0.0081 34 1 5.5680 3.8095 -2.1939 35 1 4.1132 4.5282 -2.9520 36 1 5.4337 6.0136 -4.0989 37 1 6.8899 5.2917 -3.3498 38 1 6.5375 7.6948 -2.4847 39 1 6.1932 -0.0743 -1.6531 40 1 4.0098 0.3705 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243856605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:54 Heat of formation + Delta-G solvation = -3.799410 kcal Electronic energy + Delta-G solvation = -23534.989016 eV Core-core repulsion = 20278.521169 eV Total energy + Delta-G solvation = -3256.467847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.12290 -40.28549 -38.21358 -36.80702 -35.36449 -33.17048 -31.54378 -30.68799 -29.95414 -29.17338 -27.49491 -26.92089 -23.94374 -23.11770 -22.57528 -21.92740 -21.14624 -19.46670 -18.11193 -17.89360 -16.86292 -16.58422 -16.41907 -16.32695 -16.21017 -16.20221 -15.38692 -14.80871 -14.73567 -14.49456 -14.09839 -13.53612 -13.48744 -13.15313 -13.03016 -12.90545 -12.80864 -12.79117 -12.68256 -12.65705 -12.29968 -12.20336 -11.93441 -11.55266 -11.34462 -11.23688 -10.93841 -10.79109 -9.36214 -9.29892 -8.73491 -8.42600 -8.05794 -6.29524 0.61099 0.88249 1.01521 1.24127 1.36278 1.45680 1.52816 2.19026 2.66068 2.72230 2.81114 3.13920 3.73421 3.96624 4.06971 4.27891 4.34461 4.39121 4.41978 4.47538 4.53267 4.58096 4.69293 4.75380 4.78167 4.83391 4.91098 5.11112 5.14851 5.19406 5.26452 5.37648 5.47529 5.58481 5.67468 5.77374 5.87569 5.95846 5.99047 6.07300 6.18830 6.25340 6.48937 6.56151 6.94450 6.97883 7.10142 7.18707 8.32196 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.011632 B = 0.007178 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.504053 B = 3899.804414 C = 5343.990384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.127 3.873 4 C -0.317 4.317 5 C -0.049 4.049 6 C -0.206 4.206 7 C 0.045 3.955 8 C -0.189 4.189 9 C -0.077 4.077 10 C -0.200 4.200 11 C 0.178 3.822 12 C -0.167 4.167 13 C -0.083 4.083 14 C 0.127 3.873 15 N -0.742 5.742 16 C 0.136 3.864 17 C -0.454 4.454 18 H 0.070 0.930 19 C 0.045 3.955 20 N -0.808 5.808 21 Si 0.962 3.038 22 H -0.264 1.264 23 H -0.266 1.266 24 H -0.261 1.261 25 C -0.232 4.232 26 H 0.053 0.947 27 H 0.115 0.885 28 H 0.056 0.944 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.420 0.580 39 H 0.288 0.712 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.025 8.162 -1.096 8.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.083 3.917 4 C -0.337 4.337 5 C -0.067 4.067 6 C -0.208 4.208 7 C 0.044 3.956 8 C -0.209 4.209 9 C -0.095 4.095 10 C -0.222 4.222 11 C 0.075 3.925 12 C -0.172 4.172 13 C -0.121 4.121 14 C 0.002 3.998 15 N -0.377 5.377 16 C 0.133 3.867 17 C -0.482 4.482 18 H 0.088 0.912 19 C -0.172 4.172 20 N -0.433 5.433 21 Si 0.783 3.217 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.185 1.185 25 C -0.252 4.252 26 H 0.071 0.929 27 H 0.134 0.866 28 H 0.075 0.925 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.165 0.835 33 H 0.155 0.845 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.260 0.740 39 H 0.099 0.901 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.849 7.687 -1.417 7.863 hybrid contribution 0.586 -0.254 -0.037 0.640 sum -0.263 7.433 -1.454 7.579 Atomic orbital electron populations 1.23126 0.77706 1.04443 1.01430 1.85962 1.22720 1.28459 1.89582 1.19089 0.92197 0.83772 0.96661 1.20624 0.98621 0.91779 1.22674 1.20626 0.93235 0.96159 0.96696 1.18867 0.92670 0.91903 1.17355 1.18156 0.93502 0.91895 0.92032 1.21122 1.05733 0.95749 0.98305 1.20879 0.95372 0.95397 0.97851 1.20503 1.07187 1.00848 0.93698 1.18496 0.91843 0.93643 0.88507 1.20015 1.04023 0.95707 0.97460 1.20946 0.99164 0.98793 0.93162 1.21749 0.99339 0.85470 0.93232 1.44583 1.56606 1.20230 1.16324 1.17425 0.93322 0.89344 0.86624 1.19402 0.91184 1.02337 1.35297 0.91162 1.26599 1.04670 0.93778 0.92146 1.69880 1.40090 1.11287 1.22011 0.85550 0.77452 0.78936 0.79733 1.18845 1.19033 1.18481 1.20484 0.90508 0.98598 1.15610 0.92876 0.86648 0.92500 0.85814 0.86780 0.86662 0.83490 0.84506 0.90973 0.92348 0.90151 0.91394 0.74032 0.90132 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.80 113.37 1.11 1.96 16 2 O -0.35 -15.69 10.48 -92.12 -0.97 -16.66 16 3 C 0.13 6.29 6.67 22.49 0.15 6.44 16 4 C -0.32 -14.13 9.02 22.50 0.20 -13.93 16 5 C -0.05 -2.21 9.71 22.43 0.22 -1.99 16 6 C -0.21 -10.08 5.14 -19.61 -0.10 -10.18 16 7 C 0.04 1.98 4.37 -20.06 -0.09 1.89 16 8 C -0.19 -7.23 9.76 22.55 0.22 -7.01 16 9 C -0.08 -2.41 10.00 22.15 0.22 -2.18 16 10 C -0.20 -6.16 10.07 22.60 0.23 -5.93 16 11 C 0.18 6.24 7.03 38.30 0.27 6.51 16 12 C -0.17 -6.98 5.30 -19.37 -0.10 -7.08 16 13 C -0.08 -3.35 6.41 30.26 0.19 -3.16 16 14 C 0.13 3.80 7.97 86.63 0.69 4.49 16 15 N -0.74 -21.33 6.53 -337.83 -2.21 -23.54 16 16 C 0.14 7.29 5.53 -21.14 -0.12 7.17 16 17 C -0.45 -23.96 6.23 23.36 0.15 -23.81 16 18 H 0.07 3.78 7.05 -2.91 -0.02 3.75 16 19 C 0.05 2.25 5.14 85.29 0.44 2.69 16 20 N -0.81 -41.98 10.96 21.84 0.24 -41.74 16 21 Si 0.96 38.64 29.59 68.60 2.03 40.68 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 C -0.23 -12.76 8.60 22.78 0.20 -12.56 16 26 H 0.05 1.55 7.64 -2.39 -0.02 1.53 16 27 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.06 1.61 7.65 -2.39 -0.02 1.59 16 29 H 0.12 4.66 6.25 -2.91 -0.02 4.64 16 30 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.07 3.37 6.46 -2.39 -0.02 3.35 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.42 9.09 8.96 -92.70 -0.83 8.26 16 39 H 0.29 13.67 8.30 -92.71 -0.77 12.91 16 40 H 0.10 5.96 6.18 -2.91 -0.02 5.95 16 Total: -1.00 -63.48 328.94 3.22 -60.27 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: 0.24 Total: 37.67 kcal Atomic # 6 Polarization: -60.55 SS G_CDS: 3.88 Total: -56.68 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -1.97 Total: -65.28 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.97 Total: -16.66 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.68 kcal Total: -63.48 3.22 -60.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243856605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.470 kcal (2) G-P(sol) polarization free energy of solvation -63.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds