Wall clock time and date at job start Tue Mar 31 2020 06:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35600 * 117.00107 * 2 1 4 4 C 1.39149 * 119.88023 * 0.03016 * 3 2 1 5 5 C 1.36417 * 120.43828 * 179.97438 * 4 3 2 6 6 C 1.40915 * 120.18301 * 359.97438 * 5 4 3 7 7 C 1.41242 * 120.11418 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00307 * 24.48227 * 7 6 5 9 9 C 1.39863 * 119.99988 * 204.47320 * 7 6 5 10 10 N 1.30890 * 119.99855 * 17.80825 * 9 7 6 11 11 Si 1.86801 * 120.00171 * 197.80076 * 9 7 6 12 12 H 1.48497 * 109.47299 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46926 * 120.00170 * 11 9 7 14 14 H 1.48496 * 109.47571 * 240.00002 * 11 9 7 15 15 C 1.40613 * 119.76630 * 359.70987 * 6 5 4 16 16 C 1.38593 * 119.56570 * 0.55867 * 15 6 5 17 17 C 1.48344 * 120.09598 * 179.73462 * 16 15 6 18 18 C 1.39419 * 120.02395 * 129.70612 * 17 16 15 19 19 C 1.37987 * 119.71458 * 180.02562 * 18 17 16 20 20 C 1.38302 * 120.31919 * 359.97310 * 19 18 17 21 21 C 1.38709 * 120.67088 * 0.02846 * 20 19 18 22 22 C 1.38971 * 120.01916 * 309.72598 * 17 16 15 23 23 N 1.39609 * 111.63916 * 180.02562 * 21 20 19 24 24 C 1.46519 * 110.09505 * 0.22400 * 23 21 20 25 25 C 1.51260 * 130.82676 * 180.02562 * 20 19 18 26 26 H 1.08994 * 109.47167 * 299.99361 * 1 2 3 27 27 H 1.08995 * 109.47200 * 59.99363 * 1 2 3 28 28 H 1.09007 * 109.47112 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.78409 * 0.02562 * 4 3 2 30 30 H 1.07994 * 119.90934 * 180.02562 * 5 4 3 31 31 H 0.97005 * 120.00245 * 179.97438 * 10 9 7 32 32 H 1.07995 * 120.22050 * 180.29981 * 15 6 5 33 33 H 1.07996 * 120.13959 * 0.04246 * 18 17 16 34 34 H 1.07993 * 119.83890 * 179.97438 * 19 18 17 35 35 H 1.08007 * 119.90502 * 359.97438 * 22 17 16 36 36 H 0.96998 * 124.95797 * 179.97438 * 23 21 20 37 37 H 1.08998 * 110.29802 * 118.70263 * 24 23 21 38 38 H 1.08999 * 110.29797 * 240.84327 * 24 23 21 39 39 H 1.08996 * 110.42642 * 298.74880 * 25 20 19 40 40 H 1.09008 * 110.41849 * 61.09771 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2844 2.3736 0.0006 5 6 1.8919 3.5951 0.0012 6 6 3.2980 3.6870 0.0016 7 6 3.9254 4.9524 0.0027 8 1 3.4026 5.8141 0.3908 9 6 5.2239 5.0895 -0.4986 10 7 5.7278 4.1624 -1.2730 11 14 6.2390 6.5960 -0.0632 12 1 5.4466 7.4883 0.8206 13 1 7.4756 6.1728 0.6419 14 1 6.6021 7.3243 -1.3053 15 6 4.0742 2.5145 0.0077 16 6 3.4466 1.2789 0.0014 17 6 4.2541 0.0344 0.0018 18 6 3.9826 -0.9730 0.9265 19 6 4.7380 -2.1277 0.9215 20 6 5.7606 -2.2891 0.0044 21 6 6.0434 -1.2962 -0.9220 22 6 5.2819 -0.1277 -0.9193 23 7 7.1066 -1.6548 -1.7527 24 6 7.6005 -2.9862 -1.3917 25 6 6.7224 -3.4361 -0.2126 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2062 2.3108 0.0015 30 1 1.2935 4.4941 0.0021 31 1 6.6282 4.2576 -1.6210 32 1 5.1524 2.5765 0.0130 33 1 3.1843 -0.8503 1.6434 34 1 4.5297 -2.9092 1.6371 35 1 5.4915 0.6533 -1.6354 36 1 7.4638 -1.1046 -2.4671 37 1 7.4889 -3.6715 -2.2320 38 1 8.6445 -2.9315 -1.0835 39 1 7.3295 -3.5973 0.6782 40 1 6.1785 -4.3449 -0.4708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244014569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:19 Heat of formation + Delta-G solvation = 11.531471 kcal Electronic energy + Delta-G solvation = -22940.502303 eV Core-core repulsion = 19684.699253 eV Total energy + Delta-G solvation = -3255.803050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.83549 -38.74258 -36.46810 -35.66850 -33.30894 -31.85045 -30.42290 -29.10347 -28.55955 -27.39506 -26.68091 -24.62055 -22.80416 -21.57534 -21.27808 -20.58148 -19.60893 -17.46763 -16.84776 -16.50368 -15.40543 -15.34448 -15.20695 -14.89970 -14.61310 -14.54904 -13.59017 -13.28856 -13.15120 -12.95557 -12.65331 -12.16602 -12.10009 -12.00933 -11.94221 -11.77108 -11.49737 -11.24038 -11.07016 -11.03465 -10.76841 -10.63056 -10.36319 -10.04913 -9.79713 -9.56862 -9.40180 -9.02128 -8.26038 -7.38419 -7.01786 -6.83436 -6.66054 -4.25031 1.86902 2.21711 2.78740 2.93634 3.09910 3.14744 3.20477 3.73953 3.96286 4.34362 4.41761 4.66610 4.87056 4.98148 5.20169 5.48383 5.58495 5.61096 5.67463 5.72774 5.74543 5.78826 5.90599 6.00906 6.10367 6.16183 6.20841 6.31532 6.43361 6.63820 6.88109 6.96208 7.09220 7.11050 7.16016 7.16892 7.34511 7.47840 7.56235 7.72025 7.81206 7.99690 8.16959 8.19098 8.45779 8.63690 8.89995 8.96262 10.22806 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.005706 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.890385 B = 4906.270811 C = 6918.951978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.321 6.321 3 C 0.015 3.985 4 C -0.171 4.171 5 C -0.187 4.187 6 C 0.084 3.916 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.798 5.798 11 Si 0.905 3.095 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.276 1.276 15 C -0.112 4.112 16 C -0.067 4.067 17 C 0.038 3.962 18 C -0.145 4.145 19 C -0.071 4.071 20 C -0.193 4.193 21 C 0.187 3.813 22 C -0.164 4.164 23 N -0.754 5.754 24 C 0.123 3.877 25 C -0.078 4.078 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.279 0.721 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.409 0.591 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -10.982 0.742 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.236 6.236 3 C -0.029 4.029 4 C -0.190 4.190 5 C -0.207 4.207 6 C 0.082 3.918 7 C -0.493 4.493 8 H 0.095 0.905 9 C -0.141 4.141 10 N -0.425 5.425 11 Si 0.729 3.271 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.201 1.201 15 C -0.132 4.132 16 C -0.067 4.067 17 C 0.037 3.963 18 C -0.165 4.165 19 C -0.090 4.090 20 C -0.198 4.198 21 C 0.086 3.914 22 C -0.186 4.186 23 N -0.388 5.388 24 C -0.002 4.002 25 C -0.115 4.115 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.246 0.754 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.519 -11.333 0.578 11.449 hybrid contribution 0.364 1.172 -0.329 1.270 sum 1.883 -10.161 0.249 10.338 Atomic orbital electron populations 1.22717 0.81286 1.01701 1.00220 1.85906 1.18751 1.28169 1.90810 1.18520 0.90760 0.83067 1.10528 1.20356 0.97418 0.92866 1.08383 1.20628 0.94851 0.95114 1.10125 1.17509 0.90567 0.93349 0.90353 1.19453 0.98414 0.94960 1.36483 0.90498 1.25837 0.97961 0.97642 0.92643 1.69830 1.16112 1.33582 1.22927 0.86319 0.79889 0.81647 0.79206 1.18484 1.19781 1.20128 1.21347 0.99999 0.89171 1.02650 1.17926 0.88819 0.92356 1.07633 1.18463 0.92335 0.92931 0.92566 1.20869 1.01048 0.93636 1.00908 1.20114 0.94366 0.97224 0.97268 1.19732 1.01801 0.97086 1.01185 1.18193 0.88646 0.93926 0.90657 1.20536 0.98356 0.96681 1.03026 1.44608 1.36603 1.19219 1.38401 1.21646 0.97386 0.84411 0.96765 1.20919 0.95932 0.97021 0.97659 0.93989 0.94041 0.90058 0.88442 0.88647 0.91063 0.85225 0.86269 0.87119 0.85979 0.75416 0.92342 0.92327 0.90621 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.80 101.05 0.99 1.56 16 2 O -0.32 -6.58 8.81 -18.50 -0.16 -6.74 16 3 C 0.01 0.34 6.62 -38.44 -0.25 0.09 16 4 C -0.17 -3.84 8.95 -39.90 -0.36 -4.20 16 5 C -0.19 -4.54 9.72 -39.23 -0.38 -4.92 16 6 C 0.08 2.23 5.57 -106.85 -0.60 1.63 16 7 C -0.46 -12.16 9.04 -37.83 -0.34 -12.51 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 9 C 0.08 1.89 5.13 -17.35 -0.09 1.80 16 10 N -0.80 -20.39 10.97 55.54 0.61 -19.78 16 11 Si 0.90 18.70 29.59 -169.99 -5.03 13.67 16 12 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 13 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 14 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 15 C -0.11 -2.91 8.13 -38.56 -0.31 -3.22 16 16 C -0.07 -1.60 5.47 -104.80 -0.57 -2.17 16 17 C 0.04 0.82 5.26 -105.03 -0.55 0.27 16 18 C -0.14 -2.81 8.78 -39.23 -0.34 -3.15 16 19 C -0.07 -1.20 10.02 -39.65 -0.40 -1.59 16 20 C -0.19 -3.19 6.23 -104.15 -0.65 -3.84 16 21 C 0.19 3.35 7.02 -83.68 -0.59 2.76 16 22 C -0.16 -3.38 9.53 -38.85 -0.37 -3.75 16 23 N -0.75 -10.91 6.53 -58.15 -0.38 -11.29 16 24 C 0.12 1.41 7.96 -3.65 -0.03 1.38 16 25 C -0.08 -0.96 6.94 -27.22 -0.19 -1.15 16 26 H 0.04 0.61 7.64 -51.93 -0.40 0.21 16 27 H 0.04 0.62 7.65 -51.93 -0.40 0.23 16 28 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 29 H 0.10 1.89 6.26 -52.49 -0.33 1.56 16 30 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 31 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 32 H 0.13 3.49 6.15 -52.49 -0.32 3.16 16 33 H 0.12 2.27 7.68 -52.49 -0.40 1.87 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.12 2.65 8.03 -52.48 -0.42 2.23 16 36 H 0.41 5.27 8.96 -40.82 -0.37 4.91 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 LS Contribution 332.79 15.07 5.02 5.02 Total: -1.00 -28.95 332.79 -10.13 -39.08 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.14 Total: 11.06 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -5.03 Total: -31.01 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.23 Total: -31.08 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.16 Total: -6.74 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.95 -10.13 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244014569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.611 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds