Wall clock time and date at job start Tue Mar 31 2020 06:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35600 * 117.00107 * 2 1 4 4 C 1.39149 * 119.88023 * 0.03016 * 3 2 1 5 5 C 1.36417 * 120.43828 * 179.97438 * 4 3 2 6 6 C 1.40915 * 120.18301 * 359.97438 * 5 4 3 7 7 C 1.41242 * 120.11418 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00307 * 24.48227 * 7 6 5 9 9 C 1.39863 * 119.99988 * 204.47320 * 7 6 5 10 10 N 1.30890 * 119.99855 * 17.80825 * 9 7 6 11 11 Si 1.86801 * 120.00171 * 197.80076 * 9 7 6 12 12 H 1.48497 * 109.47299 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46926 * 120.00170 * 11 9 7 14 14 H 1.48496 * 109.47571 * 240.00002 * 11 9 7 15 15 C 1.40613 * 119.76630 * 359.70987 * 6 5 4 16 16 C 1.38593 * 119.56570 * 0.55867 * 15 6 5 17 17 C 1.48344 * 120.09598 * 179.73462 * 16 15 6 18 18 C 1.39419 * 120.02395 * 129.70612 * 17 16 15 19 19 C 1.37987 * 119.71458 * 180.02562 * 18 17 16 20 20 C 1.38302 * 120.31919 * 359.97310 * 19 18 17 21 21 C 1.38709 * 120.67088 * 0.02846 * 20 19 18 22 22 C 1.38971 * 120.01916 * 309.72598 * 17 16 15 23 23 N 1.39609 * 111.63916 * 180.02562 * 21 20 19 24 24 C 1.46519 * 110.09505 * 0.22400 * 23 21 20 25 25 C 1.51260 * 130.82676 * 180.02562 * 20 19 18 26 26 H 1.08994 * 109.47167 * 299.99361 * 1 2 3 27 27 H 1.08995 * 109.47200 * 59.99363 * 1 2 3 28 28 H 1.09007 * 109.47112 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.78409 * 0.02562 * 4 3 2 30 30 H 1.07994 * 119.90934 * 180.02562 * 5 4 3 31 31 H 0.97005 * 120.00245 * 179.97438 * 10 9 7 32 32 H 1.07995 * 120.22050 * 180.29981 * 15 6 5 33 33 H 1.07996 * 120.13959 * 0.04246 * 18 17 16 34 34 H 1.07993 * 119.83890 * 179.97438 * 19 18 17 35 35 H 1.08007 * 119.90502 * 359.97438 * 22 17 16 36 36 H 0.96998 * 124.95797 * 179.97438 * 23 21 20 37 37 H 1.08998 * 110.29802 * 118.70263 * 24 23 21 38 38 H 1.08999 * 110.29797 * 240.84327 * 24 23 21 39 39 H 1.08996 * 110.42642 * 298.74880 * 25 20 19 40 40 H 1.09008 * 110.41849 * 61.09771 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2844 2.3736 0.0006 5 6 1.8919 3.5951 0.0012 6 6 3.2980 3.6870 0.0016 7 6 3.9254 4.9524 0.0027 8 1 3.4026 5.8141 0.3908 9 6 5.2239 5.0895 -0.4986 10 7 5.7278 4.1624 -1.2730 11 14 6.2390 6.5960 -0.0632 12 1 5.4466 7.4883 0.8206 13 1 7.4756 6.1728 0.6419 14 1 6.6021 7.3243 -1.3053 15 6 4.0742 2.5145 0.0077 16 6 3.4466 1.2789 0.0014 17 6 4.2541 0.0344 0.0018 18 6 3.9826 -0.9730 0.9265 19 6 4.7380 -2.1277 0.9215 20 6 5.7606 -2.2891 0.0044 21 6 6.0434 -1.2962 -0.9220 22 6 5.2819 -0.1277 -0.9193 23 7 7.1066 -1.6548 -1.7527 24 6 7.6005 -2.9862 -1.3917 25 6 6.7224 -3.4361 -0.2126 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2062 2.3108 0.0015 30 1 1.2935 4.4941 0.0021 31 1 6.6282 4.2576 -1.6210 32 1 5.1524 2.5765 0.0130 33 1 3.1843 -0.8503 1.6434 34 1 4.5297 -2.9092 1.6371 35 1 5.4915 0.6533 -1.6354 36 1 7.4638 -1.1046 -2.4671 37 1 7.4889 -3.6715 -2.2320 38 1 8.6445 -2.9315 -1.0835 39 1 7.3295 -3.5973 0.6782 40 1 6.1785 -4.3449 -0.4708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244014569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:18 Heat of formation + Delta-G solvation = -3.981990 kcal Electronic energy + Delta-G solvation = -22941.175018 eV Core-core repulsion = 19684.699253 eV Total energy + Delta-G solvation = -3256.475765 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.19795 -40.35115 -38.13378 -37.09728 -35.15088 -33.28240 -31.85567 -30.95645 -29.88881 -28.76235 -28.19547 -26.41858 -24.20849 -23.05335 -22.51487 -22.29910 -21.21506 -19.18377 -18.53105 -17.91026 -17.13780 -16.61272 -16.41037 -16.33702 -16.24168 -16.02561 -15.18578 -14.89214 -14.60389 -14.40868 -14.28630 -13.77792 -13.61829 -13.43036 -13.17714 -12.88985 -12.86380 -12.81578 -12.71834 -12.41764 -12.37254 -12.31924 -11.86560 -11.70415 -11.54312 -11.14944 -10.92887 -10.81845 -9.81150 -9.16213 -8.82085 -8.55457 -8.09839 -6.21472 0.32743 0.77370 1.00320 1.15080 1.37986 1.50253 1.53068 2.22163 2.58913 2.70812 2.83560 3.06908 3.68522 3.82631 3.88679 4.05470 4.29029 4.31251 4.35819 4.48530 4.52052 4.61795 4.66853 4.70673 4.76148 4.79426 4.82122 5.04875 5.09583 5.16828 5.20853 5.22782 5.30089 5.49130 5.55116 5.62076 5.72140 5.83182 5.90941 5.94394 6.14228 6.28693 6.42426 6.58546 6.82945 6.96339 6.98622 7.10983 8.38046 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.005706 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.890385 B = 4906.270811 C = 6918.951978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.331 6.331 3 C 0.019 3.981 4 C -0.171 4.171 5 C -0.201 4.201 6 C 0.053 3.947 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.034 3.966 10 N -0.829 5.829 11 Si 0.978 3.022 12 H -0.257 1.257 13 H -0.268 1.268 14 H -0.266 1.266 15 C -0.134 4.134 16 C -0.077 4.077 17 C 0.009 3.991 18 C -0.158 4.158 19 C -0.063 4.063 20 C -0.192 4.192 21 C 0.182 3.818 22 C -0.190 4.190 23 N -0.753 5.753 24 C 0.117 3.883 25 C -0.075 4.075 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.106 0.894 31 H 0.284 0.716 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.092 0.908 36 H 0.413 0.587 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -13.527 1.230 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.247 6.247 3 C -0.025 4.025 4 C -0.189 4.189 5 C -0.220 4.220 6 C 0.051 3.949 7 C -0.529 4.529 8 H 0.094 0.906 9 C -0.179 4.179 10 N -0.456 5.456 11 Si 0.799 3.201 12 H -0.181 1.181 13 H -0.193 1.193 14 H -0.191 1.191 15 C -0.154 4.154 16 C -0.078 4.078 17 C 0.008 3.992 18 C -0.177 4.177 19 C -0.081 4.081 20 C -0.197 4.197 21 C 0.078 3.922 22 C -0.213 4.213 23 N -0.387 5.387 24 C -0.006 4.006 25 C -0.112 4.112 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.134 0.866 29 H 0.150 0.850 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.166 0.834 35 H 0.110 0.890 36 H 0.250 0.750 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.849 -13.908 1.049 14.069 hybrid contribution 0.191 1.744 -0.521 1.830 sum 2.040 -12.164 0.528 12.345 Atomic orbital electron populations 1.23097 0.78464 1.04358 1.01009 1.85896 1.21603 1.26706 1.90454 1.18653 0.90700 0.84248 1.08937 1.20671 0.99160 0.91960 1.07125 1.20841 0.94294 0.96473 1.10439 1.17865 0.91866 0.93774 0.91423 1.19687 0.99934 0.95064 1.38250 0.90626 1.26679 0.98548 1.00768 0.91937 1.69912 1.16645 1.35454 1.23621 0.85219 0.77985 0.77747 0.79119 1.18065 1.19278 1.19125 1.21188 0.99036 0.90259 1.04898 1.18254 0.90146 0.92866 1.06552 1.18490 0.93268 0.92996 0.94436 1.20886 1.01955 0.94247 1.00660 1.20462 0.93332 0.96812 0.97508 1.20293 1.01715 0.98018 0.99641 1.18340 0.89012 0.93214 0.91604 1.20367 0.99912 0.97657 1.03392 1.44847 1.35484 1.20548 1.37796 1.21967 0.98278 0.82868 0.97535 1.21082 0.95281 0.95973 0.98844 0.92795 0.93484 0.86627 0.85049 0.87583 0.90527 0.87471 0.86493 0.83421 0.88970 0.74962 0.89994 0.90220 0.88477 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.80 113.37 1.11 1.85 16 2 O -0.33 -13.36 8.81 -89.10 -0.78 -14.15 16 3 C 0.02 0.88 6.62 23.01 0.15 1.04 16 4 C -0.17 -7.69 8.95 22.06 0.20 -7.50 16 5 C -0.20 -10.08 9.72 22.50 0.22 -9.86 16 6 C 0.05 2.95 5.57 -21.31 -0.12 2.83 16 7 C -0.50 -27.70 9.04 23.40 0.21 -27.49 16 8 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 9 C 0.03 1.79 5.13 85.23 0.44 2.23 16 10 N -0.83 -44.95 10.97 21.81 0.24 -44.71 16 11 Si 0.98 39.64 29.59 68.60 2.03 41.67 16 12 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 13 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 14 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 15 C -0.13 -7.47 8.13 22.93 0.19 -7.29 16 16 C -0.08 -3.93 5.47 -19.98 -0.11 -4.04 16 17 C 0.01 0.40 5.26 -20.13 -0.11 0.30 16 18 C -0.16 -6.12 8.78 22.49 0.20 -5.93 16 19 C -0.06 -1.98 10.02 22.23 0.22 -1.76 16 20 C -0.19 -5.87 6.23 -19.56 -0.12 -5.99 16 21 C 0.18 6.45 7.02 38.31 0.27 6.72 16 22 C -0.19 -8.33 9.53 22.74 0.22 -8.11 16 23 N -0.75 -20.76 6.53 -337.89 -2.21 -22.96 16 24 C 0.12 2.24 7.96 86.63 0.69 2.93 16 25 C -0.07 -1.50 6.94 30.28 0.21 -1.29 16 26 H 0.05 1.43 7.64 -2.39 -0.02 1.41 16 27 H 0.05 1.31 7.65 -2.39 -0.02 1.29 16 28 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 29 H 0.13 4.89 6.26 -2.91 -0.02 4.87 16 30 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 31 H 0.28 14.01 8.30 -92.70 -0.77 13.24 16 32 H 0.11 6.32 6.15 -2.91 -0.02 6.30 16 33 H 0.12 4.47 7.68 -2.91 -0.02 4.45 16 34 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.09 4.44 8.03 -2.91 -0.02 4.41 16 36 H 0.41 10.46 8.96 -92.71 -0.83 9.63 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -67.65 332.79 3.38 -64.27 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: 0.24 Total: 37.25 kcal Atomic # 6 Polarization: -65.23 SS G_CDS: 3.86 Total: -61.36 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -1.97 Total: -67.68 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.78 Total: -14.15 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -67.65 3.38 -64.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244014569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.288 kcal (2) G-P(sol) polarization free energy of solvation -67.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds