Wall clock time and date at job start Tue Mar 31 2020 06:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35872 * 116.99467 * 2 1 4 4 C 1.39463 * 119.78077 * 0.02562 * 3 2 1 5 5 C 1.37956 * 120.61362 * 179.74014 * 4 3 2 6 6 C 1.39166 * 120.16718 * 0.51252 * 5 4 3 7 7 C 1.47838 * 120.22013 * 179.73799 * 6 5 4 8 8 C 1.39726 * 120.04623 * 129.70529 * 7 6 5 9 9 C 1.37899 * 119.68587 * 180.02562 * 8 7 6 10 10 C 1.38382 * 120.35238 * 0.02562 * 9 8 7 11 11 C 1.38788 * 120.71333 * 359.97438 * 10 9 8 12 12 C 1.39264 * 120.05043 * 309.73155 * 7 6 5 13 13 N 1.39621 * 111.62366 * 180.02562 * 11 10 9 14 14 C 1.46516 * 110.10273 * 0.26777 * 13 11 10 15 15 C 1.51273 * 130.80107 * 180.02562 * 10 9 8 16 16 C 1.41894 * 119.55840 * 359.46875 * 6 5 4 17 17 C 1.40897 * 120.29734 * 180.29228 * 16 6 5 18 18 H 1.07999 * 120.00306 * 332.97350 * 17 16 6 19 19 C 1.40047 * 119.99873 * 152.97534 * 17 16 6 20 20 N 1.30784 * 119.99930 * 344.43882 * 19 17 16 21 21 Si 1.86801 * 119.99872 * 164.44305 * 19 17 16 22 22 H 1.48498 * 109.47132 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46973 * 120.00160 * 21 19 17 24 24 H 1.48498 * 109.46728 * 239.99658 * 21 19 17 25 25 C 1.37939 * 119.77941 * 179.97438 * 3 2 1 26 26 H 1.08989 * 109.47153 * 60.00276 * 1 2 3 27 27 H 1.09006 * 109.46531 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46992 * 299.99539 * 1 2 3 29 29 H 1.07998 * 119.69339 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.91939 * 180.25659 * 5 4 3 31 31 H 1.07998 * 120.16207 * 0.04952 * 8 7 6 32 32 H 1.07993 * 119.82146 * 180.02562 * 9 8 7 33 33 H 1.08001 * 119.92300 * 359.97438 * 12 7 6 34 34 H 0.97008 * 124.94555 * 179.97438 * 13 11 10 35 35 H 1.08996 * 110.29288 * 118.66924 * 14 13 11 36 36 H 1.08997 * 110.29213 * 240.79724 * 14 13 11 37 37 H 1.09000 * 110.41391 * 298.72587 * 15 10 9 38 38 H 1.08996 * 110.41943 * 61.06515 * 15 10 9 39 39 H 0.96998 * 120.00093 * 180.02562 * 20 19 17 40 40 H 1.07993 * 120.08779 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2817 2.3773 0.0005 5 6 1.8899 3.6156 0.0059 6 6 3.2782 3.7128 0.0001 7 6 3.9312 5.0391 0.0001 8 6 4.9374 5.3236 0.9269 9 6 5.5412 6.5634 0.9205 10 6 5.1551 7.5244 0.0027 11 6 4.1574 7.2587 -0.9247 12 6 3.5440 6.0071 -0.9233 13 7 3.9210 8.3561 -1.7549 14 6 4.8118 9.4619 -1.3937 15 6 5.6477 8.9381 -0.2146 16 6 4.0627 2.5305 0.0001 17 6 5.4694 2.6108 0.0005 18 1 5.9611 3.4735 -0.4242 19 6 6.2299 1.5719 0.5516 20 7 5.6613 0.6855 1.3271 21 14 8.0565 1.4524 0.1790 22 1 8.4531 2.5686 -0.7166 23 1 8.8266 1.5373 1.4458 24 1 8.3418 0.1566 -0.4878 25 6 3.4236 1.2777 0.0005 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2037 2.3108 0.0005 30 1 1.2873 4.5117 0.0105 31 1 5.2412 4.5759 1.6445 32 1 6.3194 6.7854 1.6355 33 1 2.7662 5.7876 -1.6398 34 1 3.2657 8.3812 -2.4697 35 1 5.4578 9.7168 -2.2338 36 1 4.2302 10.3307 -1.0858 37 1 5.4751 9.5420 0.6763 38 1 6.7067 8.9363 -0.4725 39 1 6.1881 -0.0338 1.7091 40 1 4.0097 0.3707 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244019324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:46 Heat of formation + Delta-G solvation = 8.690867 kcal Electronic energy + Delta-G solvation = -22854.576733 eV Core-core repulsion = 19598.650504 eV Total energy + Delta-G solvation = -3255.926228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.70288 -38.69946 -36.88782 -35.11326 -33.57254 -31.55967 -30.02135 -29.67976 -28.36319 -27.63993 -25.93632 -25.15158 -22.64073 -21.46216 -21.10555 -20.77381 -19.37595 -17.71812 -16.81953 -16.11355 -15.32722 -15.31207 -15.12038 -14.82835 -14.75434 -14.67659 -13.56607 -13.23015 -13.03774 -12.81764 -12.78376 -12.37918 -11.98455 -11.91056 -11.78381 -11.65392 -11.35740 -11.22326 -11.20398 -11.05365 -10.80663 -10.48690 -10.23452 -10.04925 -9.70047 -9.62871 -9.32145 -9.16278 -7.99929 -7.47873 -6.94992 -6.82028 -6.54172 -4.40481 1.99864 2.35857 2.76089 3.06027 3.08521 3.14769 3.19935 3.77057 3.92232 4.31572 4.53923 4.63550 4.92965 5.08468 5.24735 5.54447 5.59108 5.66332 5.73521 5.75236 5.87420 5.90122 5.96260 6.06862 6.14630 6.22236 6.33726 6.38555 6.44848 6.74632 6.83708 6.99670 7.05349 7.21716 7.25957 7.30649 7.41955 7.58276 7.72713 7.80603 7.89151 8.00035 8.08062 8.21947 8.39049 8.73888 8.83416 8.90852 10.13154 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.005696 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.460128 B = 4914.479638 C = 6865.329920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C 0.133 3.867 4 C -0.318 4.318 5 C -0.040 4.040 6 C -0.204 4.204 7 C 0.065 3.935 8 C -0.141 4.141 9 C -0.071 4.071 10 C -0.202 4.202 11 C 0.184 3.816 12 C -0.187 4.187 13 N -0.757 5.757 14 C 0.124 3.876 15 C -0.077 4.077 16 C 0.156 3.844 17 C -0.443 4.443 18 H 0.088 0.912 19 C 0.076 3.924 20 N -0.781 5.781 21 Si 0.904 3.096 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.272 1.272 25 C -0.193 4.193 26 H 0.044 0.956 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.405 0.595 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.282 0.718 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 9.132 -2.410 9.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.089 3.911 4 C -0.338 4.338 5 C -0.058 4.058 6 C -0.205 4.205 7 C 0.064 3.936 8 C -0.161 4.161 9 C -0.090 4.090 10 C -0.206 4.206 11 C 0.084 3.916 12 C -0.210 4.210 13 N -0.392 5.392 14 C -0.001 4.001 15 C -0.115 4.115 16 C 0.153 3.847 17 C -0.472 4.472 18 H 0.106 0.894 19 C -0.143 4.143 20 N -0.405 5.405 21 Si 0.728 3.272 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.197 1.197 25 C -0.213 4.213 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.147 0.853 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.242 0.758 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.631 8.882 -2.270 9.311 hybrid contribution 0.174 0.018 -0.423 0.457 sum -1.457 8.900 -2.693 9.411 Atomic orbital electron populations 1.22755 0.80805 1.01830 1.00514 1.86005 1.19486 1.29146 1.89759 1.19011 0.92476 0.82451 0.97156 1.20351 0.97292 0.92501 1.23653 1.20340 0.93332 0.95215 0.96942 1.18572 0.92050 0.91213 1.18698 1.18399 0.92479 0.91520 0.91191 1.21169 0.98195 0.95869 1.00872 1.20189 0.98998 0.92615 0.97208 1.19697 1.02842 0.96380 1.01713 1.18161 0.94512 0.88233 0.90732 1.20455 1.05029 0.91988 1.03512 1.44578 1.43584 1.12547 1.38476 1.21617 0.91947 0.89717 0.96809 1.20893 0.99365 0.93771 0.97431 1.17217 0.92819 0.88808 0.85823 1.19629 0.90957 1.03747 1.32826 0.89389 1.25976 1.01279 0.94247 0.92839 1.69825 1.38468 1.11321 1.20886 0.86303 0.81972 0.79480 0.79401 1.18128 1.19846 1.19665 1.20523 0.89306 0.99112 1.12381 0.93733 0.89946 0.93646 0.88637 0.88919 0.85251 0.87291 0.87374 0.75802 0.92512 0.92540 0.90831 0.90822 0.90682 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.80 101.05 0.99 1.59 16 2 O -0.33 -7.29 10.48 -19.34 -0.20 -7.49 16 3 C 0.13 3.23 6.67 -39.24 -0.26 2.96 16 4 C -0.32 -7.14 9.02 -39.23 -0.35 -7.50 16 5 C -0.04 -0.90 9.48 -39.34 -0.37 -1.27 16 6 C -0.20 -4.90 5.52 -104.23 -0.58 -5.47 16 7 C 0.06 1.42 4.91 -105.03 -0.52 0.90 16 8 C -0.14 -2.96 8.00 -39.15 -0.31 -3.28 16 9 C -0.07 -1.30 10.02 -39.65 -0.40 -1.69 16 10 C -0.20 -3.45 6.24 -104.08 -0.65 -4.10 16 11 C 0.18 3.25 7.02 -83.68 -0.59 2.66 16 12 C -0.19 -3.69 9.54 -38.77 -0.37 -4.06 16 13 N -0.76 -10.58 6.53 -58.16 -0.38 -10.96 16 14 C 0.12 1.43 7.96 -3.65 -0.03 1.40 16 15 C -0.08 -0.99 6.94 -27.22 -0.19 -1.18 16 16 C 0.16 4.07 5.55 -106.59 -0.59 3.48 16 17 C -0.44 -11.31 7.09 -37.90 -0.27 -11.58 16 18 H 0.09 2.23 6.64 -52.49 -0.35 1.89 16 19 C 0.08 1.86 5.17 -17.32 -0.09 1.77 16 20 N -0.78 -19.80 10.99 55.55 0.61 -19.19 16 21 Si 0.90 18.46 29.59 -169.99 -5.03 13.43 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 C -0.19 -5.10 8.59 -38.79 -0.33 -5.43 16 26 H 0.04 0.67 7.65 -51.94 -0.40 0.28 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.70 7.64 -51.93 -0.40 0.31 16 29 H 0.10 1.88 6.25 -52.49 -0.33 1.55 16 30 H 0.09 1.87 8.04 -52.49 -0.42 1.45 16 31 H 0.13 2.87 7.30 -52.49 -0.38 2.49 16 32 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.11 2.04 8.03 -52.49 -0.42 1.62 16 34 H 0.41 4.80 8.96 -40.82 -0.37 4.44 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 40 H 0.13 3.48 6.26 -52.49 -0.33 3.15 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -28.62 330.24 -9.99 -38.62 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.06 Total: 11.40 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: -4.91 Total: -30.79 kcal Atomic # 7 Polarization: -30.37 SS G_CDS: 0.23 Total: -30.14 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.20 Total: -7.49 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.62 -9.99 -38.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244019324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.306 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds