Wall clock time and date at job start Tue Mar 31 2020 06:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35872 * 116.99467 * 2 1 4 4 C 1.39463 * 119.78077 * 0.02562 * 3 2 1 5 5 C 1.37956 * 120.61362 * 179.74014 * 4 3 2 6 6 C 1.39166 * 120.16718 * 0.51252 * 5 4 3 7 7 C 1.47838 * 120.22013 * 179.73799 * 6 5 4 8 8 C 1.39726 * 120.04623 * 129.70529 * 7 6 5 9 9 C 1.37899 * 119.68587 * 180.02562 * 8 7 6 10 10 C 1.38382 * 120.35238 * 0.02562 * 9 8 7 11 11 C 1.38788 * 120.71333 * 359.97438 * 10 9 8 12 12 C 1.39264 * 120.05043 * 309.73155 * 7 6 5 13 13 N 1.39621 * 111.62366 * 180.02562 * 11 10 9 14 14 C 1.46516 * 110.10273 * 0.26777 * 13 11 10 15 15 C 1.51273 * 130.80107 * 180.02562 * 10 9 8 16 16 C 1.41894 * 119.55840 * 359.46875 * 6 5 4 17 17 C 1.40897 * 120.29734 * 180.29228 * 16 6 5 18 18 H 1.07999 * 120.00306 * 332.97350 * 17 16 6 19 19 C 1.40047 * 119.99873 * 152.97534 * 17 16 6 20 20 N 1.30784 * 119.99930 * 344.43882 * 19 17 16 21 21 Si 1.86801 * 119.99872 * 164.44305 * 19 17 16 22 22 H 1.48498 * 109.47132 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46973 * 120.00160 * 21 19 17 24 24 H 1.48498 * 109.46728 * 239.99658 * 21 19 17 25 25 C 1.37939 * 119.77941 * 179.97438 * 3 2 1 26 26 H 1.08989 * 109.47153 * 60.00276 * 1 2 3 27 27 H 1.09006 * 109.46531 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46992 * 299.99539 * 1 2 3 29 29 H 1.07998 * 119.69339 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.91939 * 180.25659 * 5 4 3 31 31 H 1.07998 * 120.16207 * 0.04952 * 8 7 6 32 32 H 1.07993 * 119.82146 * 180.02562 * 9 8 7 33 33 H 1.08001 * 119.92300 * 359.97438 * 12 7 6 34 34 H 0.97008 * 124.94555 * 179.97438 * 13 11 10 35 35 H 1.08996 * 110.29288 * 118.66924 * 14 13 11 36 36 H 1.08997 * 110.29213 * 240.79724 * 14 13 11 37 37 H 1.09000 * 110.41391 * 298.72587 * 15 10 9 38 38 H 1.08996 * 110.41943 * 61.06515 * 15 10 9 39 39 H 0.96998 * 120.00093 * 180.02562 * 20 19 17 40 40 H 1.07993 * 120.08779 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2817 2.3773 0.0005 5 6 1.8899 3.6156 0.0059 6 6 3.2782 3.7128 0.0001 7 6 3.9312 5.0391 0.0001 8 6 4.9374 5.3236 0.9269 9 6 5.5412 6.5634 0.9205 10 6 5.1551 7.5244 0.0027 11 6 4.1574 7.2587 -0.9247 12 6 3.5440 6.0071 -0.9233 13 7 3.9210 8.3561 -1.7549 14 6 4.8118 9.4619 -1.3937 15 6 5.6477 8.9381 -0.2146 16 6 4.0627 2.5305 0.0001 17 6 5.4694 2.6108 0.0005 18 1 5.9611 3.4735 -0.4242 19 6 6.2299 1.5719 0.5516 20 7 5.6613 0.6855 1.3271 21 14 8.0565 1.4524 0.1790 22 1 8.4531 2.5686 -0.7166 23 1 8.8266 1.5373 1.4458 24 1 8.3418 0.1566 -0.4878 25 6 3.4236 1.2777 0.0005 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2037 2.3108 0.0005 30 1 1.2873 4.5117 0.0105 31 1 5.2412 4.5759 1.6445 32 1 6.3194 6.7854 1.6355 33 1 2.7662 5.7876 -1.6398 34 1 3.2657 8.3812 -2.4697 35 1 5.4578 9.7168 -2.2338 36 1 4.2302 10.3307 -1.0858 37 1 5.4751 9.5420 0.6763 38 1 6.7067 8.9363 -0.4725 39 1 6.1881 -0.0338 1.7091 40 1 4.0097 0.3707 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244019324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:45 Heat of formation + Delta-G solvation = -6.811911 kcal Electronic energy + Delta-G solvation = -22855.248984 eV Core-core repulsion = 19598.650504 eV Total energy + Delta-G solvation = -3256.598479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06512 -40.38172 -38.50132 -36.58440 -35.39772 -32.92773 -31.72674 -31.29221 -29.71060 -29.10632 -27.41478 -26.96109 -24.05760 -22.89693 -22.62954 -22.30155 -20.97598 -19.51135 -18.14494 -17.92344 -16.85191 -16.74028 -16.39947 -16.34196 -16.27028 -16.22798 -15.16398 -14.78854 -14.49326 -14.43050 -14.30627 -13.97494 -13.52017 -13.20094 -13.04012 -12.90410 -12.84213 -12.82237 -12.70184 -12.59993 -12.38205 -12.08901 -11.82039 -11.68780 -11.38658 -11.32168 -11.00342 -10.69086 -9.52632 -9.36088 -8.74146 -8.45553 -8.01452 -6.32164 0.44589 0.86943 0.97746 1.29375 1.37994 1.50624 1.53076 2.20839 2.65172 2.69886 2.79214 3.10766 3.72830 3.90977 3.93722 4.24412 4.35229 4.38448 4.40020 4.46434 4.50969 4.57075 4.71161 4.73469 4.75863 4.84697 4.87085 5.07369 5.11582 5.19230 5.19827 5.28759 5.35600 5.55470 5.60479 5.75718 5.84774 5.91056 5.96323 6.06098 6.17104 6.27098 6.47672 6.55696 6.90855 6.94501 7.05426 7.09950 8.32715 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.005696 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.460128 B = 4914.479638 C = 6865.329920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.129 3.871 4 C -0.315 4.315 5 C -0.046 4.046 6 C -0.212 4.212 7 C 0.038 3.962 8 C -0.165 4.165 9 C -0.070 4.070 10 C -0.203 4.203 11 C 0.185 3.815 12 C -0.198 4.198 13 N -0.750 5.750 14 C 0.120 3.880 15 C -0.077 4.077 16 C 0.129 3.871 17 C -0.464 4.464 18 H 0.080 0.920 19 C 0.037 3.963 20 N -0.816 5.816 21 Si 0.973 3.027 22 H -0.258 1.258 23 H -0.262 1.262 24 H -0.266 1.266 25 C -0.228 4.228 26 H 0.057 0.943 27 H 0.116 0.884 28 H 0.053 0.947 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.416 0.584 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.288 0.712 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 11.928 -3.168 12.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.084 3.916 4 C -0.335 4.335 5 C -0.064 4.064 6 C -0.213 4.213 7 C 0.037 3.963 8 C -0.185 4.185 9 C -0.089 4.089 10 C -0.208 4.208 11 C 0.082 3.918 12 C -0.221 4.221 13 N -0.384 5.384 14 C -0.004 4.004 15 C -0.114 4.114 16 C 0.127 3.873 17 C -0.492 4.492 18 H 0.098 0.902 19 C -0.179 4.179 20 N -0.442 5.442 21 Si 0.794 3.206 22 H -0.182 1.182 23 H -0.187 1.187 24 H -0.190 1.190 25 C -0.249 4.249 26 H 0.076 0.924 27 H 0.134 0.866 28 H 0.072 0.928 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.120 0.880 32 H 0.150 0.850 33 H 0.128 0.872 34 H 0.254 0.746 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.759 11.706 -3.048 12.224 hybrid contribution 0.054 -0.735 -0.212 0.767 sum -1.705 10.972 -3.260 11.572 Atomic orbital electron populations 1.23149 0.77602 1.04545 1.01503 1.85969 1.22811 1.28307 1.89499 1.19102 0.92155 0.83895 0.96428 1.20671 0.98783 0.91710 1.22291 1.20671 0.93135 0.96319 0.96323 1.18931 0.92895 0.91881 1.17613 1.18386 0.93704 0.91277 0.92913 1.20992 0.99401 0.96861 1.01209 1.20389 0.98937 0.91680 0.97857 1.20202 1.02059 0.98261 1.00279 1.18293 0.93986 0.88338 0.91230 1.20422 1.05626 0.92740 1.03330 1.44740 1.43882 1.11948 1.37858 1.21898 0.92001 0.89336 0.97118 1.21058 1.00454 0.90890 0.98983 1.17555 0.93647 0.89590 0.86556 1.19671 0.91259 1.04285 1.34018 0.90221 1.26751 1.05498 0.93491 0.92118 1.69893 1.40259 1.12110 1.21890 0.85287 0.76554 0.79364 0.79427 1.18178 1.18701 1.19039 1.20460 0.90566 0.98482 1.15343 0.92414 0.86564 0.92788 0.85480 0.86464 0.88027 0.84976 0.87200 0.74610 0.90331 0.89944 0.88809 0.89252 0.90125 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.80 113.37 1.11 1.93 16 2 O -0.35 -15.72 10.48 -92.11 -0.97 -16.69 16 3 C 0.13 6.44 6.67 22.49 0.15 6.59 16 4 C -0.32 -14.13 9.02 22.50 0.20 -13.93 16 5 C -0.05 -2.11 9.48 22.43 0.21 -1.90 16 6 C -0.21 -10.63 5.52 -19.61 -0.11 -10.74 16 7 C 0.04 1.72 4.91 -20.13 -0.10 1.62 16 8 C -0.16 -7.18 8.00 22.55 0.18 -7.00 16 9 C -0.07 -2.50 10.02 22.22 0.22 -2.28 16 10 C -0.20 -6.48 6.24 -19.52 -0.12 -6.60 16 11 C 0.18 6.16 7.02 38.31 0.27 6.43 16 12 C -0.20 -7.80 9.54 22.79 0.22 -7.58 16 13 N -0.75 -18.42 6.53 -337.91 -2.21 -20.62 16 14 C 0.12 2.20 7.96 86.62 0.69 2.89 16 15 C -0.08 -1.65 6.94 30.28 0.21 -1.44 16 16 C 0.13 7.17 5.55 -21.14 -0.12 7.05 16 17 C -0.46 -25.20 7.09 23.36 0.17 -25.03 16 18 H 0.08 4.31 6.64 -2.91 -0.02 4.29 16 19 C 0.04 1.92 5.17 85.29 0.44 2.36 16 20 N -0.82 -43.86 10.99 21.84 0.24 -43.62 16 21 Si 0.97 39.26 29.59 68.60 2.03 41.29 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 25 C -0.23 -12.81 8.59 22.78 0.20 -12.62 16 26 H 0.06 1.63 7.65 -2.39 -0.02 1.61 16 27 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 28 H 0.05 1.57 7.64 -2.39 -0.02 1.55 16 29 H 0.13 4.77 6.25 -2.91 -0.02 4.76 16 30 H 0.12 4.66 8.04 -2.91 -0.02 4.64 16 31 H 0.10 4.88 7.30 -2.91 -0.02 4.86 16 32 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.11 4.14 8.03 -2.91 -0.02 4.12 16 34 H 0.42 8.51 8.96 -92.70 -0.83 7.68 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 40 H 0.10 6.04 6.26 -2.91 -0.02 6.03 16 Total: -1.00 -66.56 330.24 3.16 -63.40 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: 0.24 Total: 36.50 kcal Atomic # 6 Polarization: -64.08 SS G_CDS: 3.82 Total: -60.25 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -1.97 Total: -64.24 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.97 Total: -16.69 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -66.56 3.16 -63.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244019324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.588 kcal (2) G-P(sol) polarization free energy of solvation -66.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds