Wall clock time and date at job start Tue Mar 31 2020 06:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99896 * 2 1 4 4 C 1.38901 * 119.98485 * 359.97438 * 3 2 1 5 5 C 1.38274 * 120.23805 * 179.97438 * 4 3 2 6 6 C 1.37990 * 120.20269 * 0.02562 * 5 4 3 7 7 C 1.39610 * 119.96620 * 359.97438 * 6 5 4 8 8 C 1.47965 * 120.11853 * 179.97438 * 7 6 5 9 9 C 1.39897 * 119.45136 * 5.95287 * 8 7 6 10 10 C 1.36606 * 119.46722 * 179.72504 * 9 8 7 11 11 C 1.41298 * 118.41649 * 0.53297 * 10 9 8 12 12 C 1.41044 * 120.55871 * 179.74977 * 11 10 9 13 13 H 1.08008 * 120.00039 * 329.70127 * 12 11 10 14 14 C 1.40030 * 120.00534 * 149.70043 * 12 11 10 15 15 N 1.30788 * 120.00332 * 167.86229 * 14 12 11 16 16 Si 1.86803 * 119.99433 * 347.86318 * 14 12 11 17 17 H 1.48507 * 109.46984 * 93.16932 * 16 14 12 18 18 H 1.48497 * 109.46988 * 213.16678 * 16 14 12 19 19 H 1.48500 * 109.47289 * 333.16763 * 16 14 12 20 20 C 1.40954 * 118.88978 * 359.73235 * 11 10 9 21 21 N 1.31271 * 120.40036 * 359.97438 * 20 11 10 22 22 C 1.38430 * 119.98422 * 179.97438 * 3 2 1 23 23 C 1.50701 * 120.09983 * 0.02562 * 22 3 2 24 24 C 1.53002 * 117.49532 * 315.51732 * 23 22 3 25 25 C 1.52998 * 117.49724 * 246.85903 * 23 22 3 26 26 H 1.08998 * 109.47464 * 60.00329 * 1 2 3 27 27 H 1.09001 * 109.47102 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47283 * 299.99708 * 1 2 3 29 29 H 1.07999 * 119.87606 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.89509 * 179.75049 * 5 4 3 31 31 H 1.07997 * 120.01274 * 180.02562 * 6 5 4 32 32 H 1.08005 * 120.25996 * 0.02562 * 9 8 7 33 33 H 1.08009 * 120.79208 * 180.24621 * 10 9 8 34 34 H 0.96993 * 119.99992 * 179.97438 * 15 14 12 35 35 H 1.07999 * 119.80063 * 179.97438 * 20 11 10 36 36 H 1.08996 * 115.55108 * 101.18457 * 23 22 3 37 37 H 1.08999 * 117.50241 * 0.02562 * 24 23 22 38 38 H 1.09006 * 117.49749 * 145.02625 * 24 23 22 39 39 H 1.09000 * 117.50372 * 214.98114 * 25 23 22 40 40 H 1.09004 * 117.49543 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2891 2.3756 -0.0005 5 6 1.9114 3.6104 0.0000 6 6 3.2888 3.6936 0.0005 7 6 4.0578 2.5284 0.0011 8 6 5.5350 2.6137 0.0011 9 6 6.1518 3.8630 0.1269 10 6 7.5156 3.9415 0.1326 11 6 8.2585 2.7471 -0.0015 12 6 9.6686 2.7764 -0.0067 13 1 10.1894 3.6413 -0.3906 14 6 10.3935 1.6843 0.4859 15 7 11.6807 1.6023 0.2689 16 14 9.5220 0.3445 1.4528 17 1 9.1137 -0.7456 0.5306 18 1 10.4412 -0.1986 2.4850 19 1 8.3184 0.9126 2.1114 20 6 7.5667 1.5257 -0.1296 21 7 6.2543 1.5018 -0.1236 22 6 3.4284 1.2830 0.0005 23 6 4.2510 0.0203 0.0005 24 6 3.8250 -1.1003 0.9511 25 6 5.0830 -0.2807 1.2487 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.2108 2.3165 -0.0005 30 1 1.3176 4.5124 -0.0045 31 1 3.7716 4.6597 0.0014 32 1 5.5545 4.7577 0.2236 33 1 8.0142 4.8945 0.2325 34 1 12.1828 0.8459 0.6104 35 1 8.1199 0.6039 -0.2334 36 1 4.6678 -0.2692 -0.9641 37 1 2.9494 -0.9245 1.5761 38 1 3.9620 -2.1272 0.6120 39 1 6.0472 -0.7686 1.1054 40 1 5.0357 0.4348 2.0697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244244521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:21 Heat of formation + Delta-G solvation = 48.178887 kcal Electronic energy + Delta-G solvation = -23349.352132 eV Core-core repulsion = 20095.138233 eV Total energy + Delta-G solvation = -3254.213899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.13986 -38.74723 -37.06193 -36.03878 -34.10788 -31.80292 -31.27542 -30.13227 -29.08827 -27.19965 -25.43377 -23.54818 -22.49508 -21.76752 -21.65195 -20.47732 -19.74842 -17.87132 -17.58435 -16.11032 -15.92280 -15.62972 -15.45505 -15.01108 -14.61401 -14.53848 -13.91944 -13.58497 -13.24139 -13.18643 -13.00644 -12.68098 -12.22381 -12.08409 -11.80380 -11.70217 -11.28607 -11.16183 -11.03860 -10.87952 -10.72617 -10.63427 -10.36147 -10.09931 -9.86930 -9.58165 -9.38501 -8.75217 -8.60390 -7.97928 -7.77879 -7.41426 -7.21670 -4.71662 1.37337 1.81641 2.52760 2.61203 3.00758 3.11675 3.19193 3.49072 3.78297 4.06594 4.50454 4.59734 4.98655 5.08944 5.16219 5.20630 5.23594 5.34632 5.43678 5.49703 5.57756 5.72759 5.78954 5.89380 5.92945 6.06753 6.17707 6.21047 6.23007 6.45089 6.48540 6.56721 6.64825 6.75588 6.78973 6.79675 6.89220 6.94667 7.06680 7.12748 7.38644 7.46736 7.71148 7.77982 7.99055 8.28488 8.42981 9.32092 9.77292 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.004993 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.078196 B = 5606.448809 C = 6651.626892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.132 3.868 4 C -0.235 4.235 5 C -0.083 4.083 6 C -0.167 4.167 7 C 0.056 3.944 8 C -0.008 4.008 9 C -0.100 4.100 10 C -0.185 4.185 11 C 0.048 3.952 12 C -0.414 4.414 13 H 0.096 0.904 14 C 0.079 3.921 15 N -0.790 5.790 16 Si 0.913 3.087 17 H -0.262 1.262 18 H -0.287 1.287 19 H -0.240 1.240 20 C -0.031 4.031 21 N -0.411 5.411 22 C -0.083 4.083 23 C -0.055 4.055 24 C -0.188 4.188 25 C -0.135 4.135 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.292 0.708 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 -1.503 1.230 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.087 3.913 4 C -0.254 4.254 5 C -0.101 4.101 6 C -0.186 4.186 7 C 0.055 3.945 8 C -0.141 4.141 9 C -0.120 4.120 10 C -0.209 4.209 11 C 0.043 3.957 12 C -0.442 4.442 13 H 0.114 0.886 14 C -0.143 4.143 15 N -0.412 5.412 16 Si 0.739 3.261 17 H -0.188 1.188 18 H -0.215 1.215 19 H -0.163 1.163 20 C -0.197 4.197 21 N -0.118 5.118 22 C -0.084 4.084 23 C -0.074 4.074 24 C -0.226 4.226 25 C -0.172 4.172 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.147 0.853 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.435 -2.541 1.155 15.686 hybrid contribution 0.123 0.545 0.426 0.703 sum -15.313 -1.995 1.581 15.523 Atomic orbital electron populations 1.22961 0.79749 1.03203 1.00868 1.86171 1.20067 1.26929 1.88854 1.18715 0.91470 0.83887 0.97245 1.21025 0.99140 0.92433 1.12804 1.20664 0.94319 0.96481 0.98628 1.21057 0.93297 0.97850 1.06392 1.18309 0.91490 0.91069 0.93668 1.18718 0.90642 0.89202 1.15539 1.21286 0.95151 0.96865 0.98728 1.21022 0.92992 0.98078 1.08848 1.18727 0.94568 0.92645 0.89774 1.19609 0.89756 1.02651 1.32142 0.88569 1.26306 0.94953 0.98391 0.94606 1.69610 1.08396 1.29560 1.33655 0.86314 0.80094 0.79994 0.79714 1.18805 1.21462 1.16349 1.22478 0.89687 0.96994 1.10500 1.67349 1.07567 1.29767 1.07107 1.18603 0.89107 0.94354 1.06362 1.20192 0.99824 0.91696 0.95646 1.23129 0.98987 0.95968 1.04483 1.22593 0.94203 1.01475 0.98956 0.93117 0.88826 0.93186 0.86356 0.86481 0.85980 0.87458 0.87095 0.89737 0.85261 0.87606 0.89573 0.89913 0.89624 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.51 8.17 -19.43 -0.16 -4.67 16 3 C 0.13 2.15 6.51 -39.27 -0.26 1.90 16 4 C -0.23 -3.35 9.04 -39.32 -0.36 -3.71 16 5 C -0.08 -1.18 10.03 -39.66 -0.40 -1.57 16 6 C -0.17 -2.74 9.41 -39.16 -0.37 -3.11 16 7 C 0.06 1.08 5.87 -104.91 -0.62 0.46 16 8 C -0.01 -0.17 6.60 -82.75 -0.55 -0.72 16 9 C -0.10 -2.06 9.37 -39.55 -0.37 -2.44 16 10 C -0.18 -4.07 9.87 -39.01 -0.39 -4.46 16 11 C 0.05 1.16 5.17 -106.64 -0.55 0.61 16 12 C -0.41 -10.44 9.62 -37.85 -0.36 -10.80 16 13 H 0.10 2.51 8.06 -52.48 -0.42 2.09 16 14 C 0.08 1.94 5.48 -17.32 -0.09 1.85 16 15 N -0.79 -19.64 13.93 55.55 0.77 -18.87 16 16 Si 0.91 19.83 24.39 -169.99 -4.15 15.68 16 17 H -0.26 -5.54 6.70 56.52 0.38 -5.16 16 18 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.24 -5.46 6.59 56.52 0.37 -5.09 16 20 C -0.03 -0.74 8.15 -16.76 -0.14 -0.88 16 21 N -0.41 -9.37 5.39 -9.10 -0.05 -9.42 16 22 C -0.08 -1.55 5.46 -104.06 -0.57 -2.12 16 23 C -0.06 -1.04 3.87 -91.77 -0.35 -1.40 16 24 C -0.19 -3.11 9.13 -26.69 -0.24 -3.36 16 25 C -0.13 -2.55 7.79 -26.69 -0.21 -2.75 16 26 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 29 H 0.12 1.35 6.28 -52.49 -0.33 1.02 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.12 1.81 6.19 -52.49 -0.32 1.49 16 32 H 0.11 1.87 6.19 -52.48 -0.32 1.54 16 33 H 0.11 2.25 8.06 -52.48 -0.42 1.82 16 34 H 0.29 6.54 8.29 -40.82 -0.34 6.20 16 35 H 0.13 3.05 4.30 -52.49 -0.23 2.82 16 36 H 0.11 2.08 8.06 -51.93 -0.42 1.66 16 37 H 0.09 1.40 7.21 -51.93 -0.37 1.02 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.66 8.13 -51.93 -0.42 1.24 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -26.86 322.03 -8.49 -35.35 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -4.94 Total: 8.30 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -4.83 Total: -31.22 kcal Atomic # 7 Polarization: -29.01 SS G_CDS: 0.72 Total: -28.29 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.16 Total: -4.67 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.15 Total: 15.68 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.86 -8.49 -35.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244244521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.531 kcal (2) G-P(sol) polarization free energy of solvation -26.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds