Wall clock time and date at job start Tue Mar 31 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99896 * 2 1 4 4 C 1.38901 * 119.98485 * 359.97438 * 3 2 1 5 5 C 1.38274 * 120.23805 * 179.97438 * 4 3 2 6 6 C 1.37990 * 120.20269 * 0.02562 * 5 4 3 7 7 C 1.39610 * 119.96620 * 359.97438 * 6 5 4 8 8 C 1.47965 * 120.11853 * 179.97438 * 7 6 5 9 9 C 1.39897 * 119.45136 * 5.95287 * 8 7 6 10 10 C 1.36606 * 119.46722 * 179.72504 * 9 8 7 11 11 C 1.41298 * 118.41649 * 0.53297 * 10 9 8 12 12 C 1.41044 * 120.55871 * 179.74977 * 11 10 9 13 13 H 1.08008 * 120.00039 * 329.70127 * 12 11 10 14 14 C 1.40030 * 120.00534 * 149.70043 * 12 11 10 15 15 N 1.30788 * 120.00332 * 167.86229 * 14 12 11 16 16 Si 1.86803 * 119.99433 * 347.86318 * 14 12 11 17 17 H 1.48507 * 109.46984 * 93.16932 * 16 14 12 18 18 H 1.48497 * 109.46988 * 213.16678 * 16 14 12 19 19 H 1.48500 * 109.47289 * 333.16763 * 16 14 12 20 20 C 1.40954 * 118.88978 * 359.73235 * 11 10 9 21 21 N 1.31271 * 120.40036 * 359.97438 * 20 11 10 22 22 C 1.38430 * 119.98422 * 179.97438 * 3 2 1 23 23 C 1.50701 * 120.09983 * 0.02562 * 22 3 2 24 24 C 1.53002 * 117.49532 * 315.51732 * 23 22 3 25 25 C 1.52998 * 117.49724 * 246.85903 * 23 22 3 26 26 H 1.08998 * 109.47464 * 60.00329 * 1 2 3 27 27 H 1.09001 * 109.47102 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47283 * 299.99708 * 1 2 3 29 29 H 1.07999 * 119.87606 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.89509 * 179.75049 * 5 4 3 31 31 H 1.07997 * 120.01274 * 180.02562 * 6 5 4 32 32 H 1.08005 * 120.25996 * 0.02562 * 9 8 7 33 33 H 1.08009 * 120.79208 * 180.24621 * 10 9 8 34 34 H 0.96993 * 119.99992 * 179.97438 * 15 14 12 35 35 H 1.07999 * 119.80063 * 179.97438 * 20 11 10 36 36 H 1.08996 * 115.55108 * 101.18457 * 23 22 3 37 37 H 1.08999 * 117.50241 * 0.02562 * 24 23 22 38 38 H 1.09006 * 117.49749 * 145.02625 * 24 23 22 39 39 H 1.09000 * 117.50372 * 214.98114 * 25 23 22 40 40 H 1.09004 * 117.49543 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2891 2.3756 -0.0005 5 6 1.9114 3.6104 0.0000 6 6 3.2888 3.6936 0.0005 7 6 4.0578 2.5284 0.0011 8 6 5.5350 2.6137 0.0011 9 6 6.1518 3.8630 0.1269 10 6 7.5156 3.9415 0.1326 11 6 8.2585 2.7471 -0.0015 12 6 9.6686 2.7764 -0.0067 13 1 10.1894 3.6413 -0.3906 14 6 10.3935 1.6843 0.4859 15 7 11.6807 1.6023 0.2689 16 14 9.5220 0.3445 1.4528 17 1 9.1137 -0.7456 0.5306 18 1 10.4412 -0.1986 2.4850 19 1 8.3184 0.9126 2.1114 20 6 7.5667 1.5257 -0.1296 21 7 6.2543 1.5018 -0.1236 22 6 3.4284 1.2830 0.0005 23 6 4.2510 0.0203 0.0005 24 6 3.8250 -1.1003 0.9511 25 6 5.0830 -0.2807 1.2487 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.2108 2.3165 -0.0005 30 1 1.3176 4.5124 -0.0045 31 1 3.7716 4.6597 0.0014 32 1 5.5545 4.7577 0.2236 33 1 8.0142 4.8945 0.2325 34 1 12.1828 0.8459 0.6104 35 1 8.1199 0.6039 -0.2334 36 1 4.6678 -0.2692 -0.9641 37 1 2.9494 -0.9245 1.5761 38 1 3.9620 -2.1272 0.6120 39 1 6.0472 -0.7686 1.1054 40 1 5.0357 0.4348 2.0697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244244521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:20 Heat of formation + Delta-G solvation = 35.278258 kcal Electronic energy + Delta-G solvation = -23349.911545 eV Core-core repulsion = 20095.138233 eV Total energy + Delta-G solvation = -3254.773312 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44023 -40.31085 -38.34334 -37.39280 -35.88205 -33.45440 -32.95264 -31.40450 -30.53749 -28.11942 -27.06561 -25.00121 -24.07757 -23.28371 -23.16305 -21.89038 -21.14157 -19.64644 -18.86671 -17.74922 -17.18657 -16.95841 -16.54200 -16.49242 -16.13749 -15.96089 -15.49224 -14.98254 -14.90105 -14.71510 -14.31672 -14.22444 -13.70651 -13.42249 -13.24725 -12.93232 -12.86848 -12.67965 -12.52826 -12.32958 -12.23569 -11.92191 -11.83994 -11.61440 -11.46329 -11.09089 -10.95386 -10.36582 -10.22242 -9.66766 -9.10216 -9.03703 -8.91360 -6.60003 -0.06610 0.59052 0.78350 0.96168 1.23130 1.36636 1.41556 2.00858 2.48089 2.51782 2.94957 3.16132 3.56559 3.65071 3.82354 3.99168 4.13083 4.20093 4.27363 4.36814 4.41028 4.46823 4.47992 4.49869 4.62802 4.70891 4.74736 4.80562 4.82557 4.86619 5.01600 5.05348 5.15687 5.24997 5.31009 5.36720 5.47520 5.51884 5.53457 5.63568 5.86366 5.94617 6.00658 6.12568 6.46742 6.59554 6.61298 7.54590 8.01611 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.004993 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.078196 B = 5606.448809 C = 6651.626892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.126 3.874 4 C -0.219 4.219 5 C -0.076 4.076 6 C -0.166 4.166 7 C 0.016 3.984 8 C 0.005 3.995 9 C -0.103 4.103 10 C -0.186 4.186 11 C 0.032 3.968 12 C -0.452 4.452 13 H 0.072 0.928 14 C 0.054 3.946 15 N -0.829 5.829 16 Si 0.960 3.040 17 H -0.258 1.258 18 H -0.272 1.272 19 H -0.260 1.260 20 C -0.047 4.047 21 N -0.422 5.422 22 C -0.103 4.103 23 C -0.065 4.065 24 C -0.156 4.156 25 C -0.148 4.148 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.126 0.874 34 H 0.300 0.700 35 H 0.125 0.875 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.287 -1.095 1.627 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C 0.081 3.919 4 C -0.237 4.237 5 C -0.093 4.093 6 C -0.185 4.185 7 C 0.015 3.985 8 C -0.130 4.130 9 C -0.123 4.123 10 C -0.212 4.212 11 C 0.028 3.972 12 C -0.481 4.481 13 H 0.090 0.910 14 C -0.163 4.163 15 N -0.453 5.453 16 Si 0.784 3.216 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.185 1.185 20 C -0.210 4.210 21 N -0.129 5.129 22 C -0.105 4.105 23 C -0.084 4.084 24 C -0.193 4.193 25 C -0.186 4.186 26 H 0.082 0.918 27 H 0.133 0.867 28 H 0.082 0.918 29 H 0.173 0.827 30 H 0.176 0.824 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.313 -2.159 1.546 20.486 hybrid contribution 1.085 0.488 0.257 1.217 sum -19.228 -1.671 1.803 19.385 Atomic orbital electron populations 1.23315 0.77071 1.05224 1.02114 1.86142 1.22780 1.26294 1.88560 1.18784 0.90840 0.85391 0.96908 1.21505 1.00946 0.91574 1.09723 1.21129 0.93578 0.98118 0.96509 1.21314 0.94431 0.97342 1.05455 1.18405 0.90158 0.92808 0.97101 1.19455 0.92430 0.89200 1.11957 1.21657 0.94767 0.98090 0.97757 1.21329 0.93895 0.98074 1.07852 1.18854 0.94355 0.93694 0.90334 1.19505 0.90433 1.02802 1.35409 0.91030 1.26727 0.95289 0.99438 0.94863 1.69619 1.09126 1.30894 1.35695 0.85608 0.78610 0.78387 0.78968 1.18370 1.19844 1.18473 1.22464 0.90286 0.96843 1.11358 1.67448 1.07000 1.30660 1.07745 1.18725 0.90603 0.93815 1.07327 1.20149 1.00266 0.93283 0.94657 1.23114 0.97477 0.96101 1.02621 1.22428 0.94787 1.02387 0.98961 0.91815 0.86727 0.91766 0.82746 0.82420 0.84440 0.83583 0.85612 0.88923 0.85849 0.89474 0.88718 0.88196 0.90957 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.32 -8.35 8.17 -92.45 -0.76 -9.10 16 3 C 0.13 3.69 6.51 22.47 0.15 3.83 16 4 C -0.22 -5.07 9.04 22.44 0.20 -4.86 16 5 C -0.08 -1.73 10.03 22.22 0.22 -1.51 16 6 C -0.17 -4.82 9.41 22.54 0.21 -4.60 16 7 C 0.02 0.59 5.87 -20.05 -0.12 0.48 16 8 C 0.01 0.22 6.60 41.95 0.28 0.50 16 9 C -0.10 -4.12 9.37 22.29 0.21 -3.92 16 10 C -0.19 -8.29 9.87 22.64 0.22 -8.07 16 11 C 0.03 1.63 5.17 -21.17 -0.11 1.52 16 12 C -0.45 -24.33 9.62 23.39 0.23 -24.10 16 13 H 0.07 4.05 8.06 -2.91 -0.02 4.03 16 14 C 0.05 2.82 5.48 85.28 0.47 3.29 16 15 N -0.83 -43.41 13.93 21.84 0.30 -43.11 16 16 Si 0.96 42.88 24.39 68.60 1.67 44.55 16 17 H -0.26 -11.15 6.70 99.48 0.67 -10.49 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.26 -12.32 6.59 99.48 0.66 -11.67 16 20 C -0.05 -2.34 8.15 85.44 0.70 -1.64 16 21 N -0.42 -19.64 5.39 -182.70 -0.98 -20.62 16 22 C -0.10 -3.69 5.46 -19.50 -0.11 -3.79 16 23 C -0.07 -2.43 3.87 -11.54 -0.04 -2.48 16 24 C -0.16 -4.94 9.13 30.62 0.28 -4.66 16 25 C -0.15 -5.66 7.79 30.62 0.24 -5.42 16 26 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 27 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 28 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 29 H 0.16 2.46 6.28 -2.91 -0.02 2.44 16 30 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.14 3.46 6.19 -2.91 -0.02 3.44 16 32 H 0.15 4.61 6.19 -2.91 -0.02 4.60 16 33 H 0.13 5.11 8.06 -2.91 -0.02 5.09 16 34 H 0.30 14.07 8.29 -92.71 -0.77 13.30 16 35 H 0.12 6.13 4.30 -2.91 -0.01 6.12 16 36 H 0.09 3.51 8.06 -2.39 -0.02 3.49 16 37 H 0.09 2.85 7.21 -2.39 -0.02 2.83 16 38 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 39 H 0.07 2.91 8.13 -2.39 -0.02 2.89 16 40 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 Total: -1.00 -61.74 322.03 5.34 -56.40 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.97 Total: 25.95 kcal Atomic # 6 Polarization: -58.20 SS G_CDS: 4.13 Total: -54.06 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.68 Total: -63.73 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.76 Total: -9.10 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.67 Total: 44.55 kcal Total: -61.74 5.34 -56.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244244521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.680 kcal (2) G-P(sol) polarization free energy of solvation -61.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds