Wall clock time and date at job start Tue Mar 31 2020 06:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99748 * 2 1 4 4 C 1.38906 * 119.98476 * 359.97438 * 3 2 1 5 5 C 1.38287 * 120.24123 * 180.02562 * 4 3 2 6 6 C 1.37984 * 120.19796 * 359.68998 * 5 4 3 7 7 C 1.39630 * 119.96662 * 0.58816 * 6 5 4 8 8 C 1.47967 * 120.11791 * 179.71972 * 7 6 5 9 9 C 1.40260 * 120.35056 * 309.71774 * 8 7 6 10 10 C 1.36682 * 118.61068 * 180.02562 * 9 8 7 11 11 C 1.40879 * 119.25186 * 359.97438 * 10 9 8 12 12 C 1.40988 * 119.67842 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00432 * 359.97438 * 12 11 10 14 14 C 1.40100 * 119.99784 * 180.02562 * 12 11 10 15 15 N 1.30714 * 119.99905 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00064 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47314 * 60.00138 * 16 14 12 18 18 H 1.48511 * 109.47056 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47484 * 299.99952 * 16 14 12 20 20 N 1.33779 * 120.63469 * 359.97438 * 11 10 9 21 21 C 1.31186 * 121.50886 * 359.74629 * 20 11 10 22 22 C 1.38418 * 119.98181 * 179.97438 * 3 2 1 23 23 C 1.50694 * 120.10234 * 0.02562 * 22 3 2 24 24 C 1.53002 * 117.49994 * 129.86863 * 23 22 3 25 25 C 1.53004 * 117.49752 * 61.20708 * 23 22 3 26 26 H 1.09001 * 109.47349 * 299.99840 * 1 2 3 27 27 H 1.09004 * 109.47353 * 60.00286 * 1 2 3 28 28 H 1.09001 * 109.46909 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.88051 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.90027 * 179.97438 * 5 4 3 31 31 H 1.08007 * 120.01835 * 180.30236 * 6 5 4 32 32 H 1.08000 * 120.68996 * 0.02562 * 9 8 7 33 33 H 1.08001 * 120.37392 * 179.97438 * 10 9 8 34 34 H 0.97008 * 119.99623 * 180.02562 * 15 14 12 35 35 H 1.08000 * 119.65952 * 180.26406 * 21 20 11 36 36 H 1.09001 * 115.55234 * 275.53808 * 23 22 3 37 37 H 1.08997 * 117.49712 * 359.97438 * 24 23 22 38 38 H 1.08997 * 117.50107 * 145.02094 * 24 23 22 39 39 H 1.09004 * 117.49743 * 214.97823 * 25 23 22 40 40 H 1.08992 * 117.49892 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2890 2.3756 -0.0005 5 6 1.9112 3.6106 -0.0011 6 6 3.2885 3.6938 0.0054 7 6 4.0577 2.5285 0.0000 8 6 5.5349 2.6139 0.0007 9 6 6.1979 3.4312 -0.9264 10 6 7.5634 3.4830 -0.8944 11 6 8.2590 2.7190 0.0632 12 6 9.6675 2.7661 0.1047 13 1 10.2080 3.3854 -0.5958 14 6 10.3660 2.0086 1.0539 15 7 9.7119 1.2587 1.9014 16 14 12.2322 2.0704 1.1084 17 1 12.6740 3.4645 1.3663 18 1 12.7252 1.1864 2.1951 19 1 12.7810 1.6099 -0.1924 20 7 7.5959 1.9501 0.9343 21 6 6.2857 1.8841 0.9315 22 6 3.4282 1.2830 0.0005 23 6 4.2508 0.0204 0.0005 24 6 5.3658 -0.0964 -1.0407 25 6 4.0892 -0.9281 -1.1892 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2106 2.3165 -0.0014 30 1 1.3173 4.5127 -0.0019 31 1 3.7715 4.6599 0.0099 32 1 5.6411 4.0076 -1.6504 33 1 8.1030 4.1027 -1.5954 34 1 10.1956 0.7345 2.5589 35 1 5.7807 1.2567 1.6512 36 1 4.4276 -0.4256 0.9793 37 1 5.5040 0.7399 -1.7260 38 1 6.2759 -0.6194 -0.7471 39 1 4.1601 -1.9980 -0.9931 40 1 3.3876 -0.6390 -1.9715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244248373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:45 Heat of formation + Delta-G solvation = 44.405327 kcal Electronic energy + Delta-G solvation = -23135.878788 eV Core-core repulsion = 19881.501255 eV Total energy + Delta-G solvation = -3254.377533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.06819 -38.39366 -37.04109 -36.01461 -33.76372 -31.52608 -30.58089 -29.98994 -28.63280 -27.15311 -25.55026 -23.41580 -22.33630 -21.53619 -21.44544 -20.49841 -19.73463 -17.58531 -17.39633 -15.96676 -15.79300 -15.49144 -15.40468 -14.71771 -14.51969 -14.28771 -13.99484 -13.61954 -13.33472 -12.75753 -12.45453 -12.34423 -12.04257 -11.81077 -11.75132 -11.43273 -11.25336 -11.08920 -10.96050 -10.86193 -10.75262 -10.60767 -10.35706 -10.02441 -9.95311 -9.50782 -9.38898 -8.53913 -8.17887 -7.78890 -7.58120 -7.31170 -6.48658 -4.57758 1.64145 1.86276 2.73951 3.03429 3.05204 3.08351 3.15262 3.52807 3.86838 4.18975 4.41528 4.69309 5.00015 5.11289 5.17312 5.24288 5.41616 5.46240 5.53834 5.61883 5.67610 5.84943 5.90121 5.95848 6.04031 6.09170 6.13540 6.24129 6.44580 6.52340 6.65431 6.67834 6.71048 6.80063 6.83476 6.85234 7.02839 7.10594 7.19864 7.36547 7.59406 7.70262 7.77525 7.98256 8.14259 8.55811 8.85121 10.05562 10.21369 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.004089 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.828202 B = 6846.448558 C = 7431.404307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.310 6.310 3 C 0.134 3.866 4 C -0.237 4.237 5 C -0.083 4.083 6 C -0.164 4.164 7 C 0.064 3.936 8 C -0.270 4.270 9 C -0.035 4.035 10 C -0.275 4.275 11 C 0.256 3.744 12 C -0.418 4.418 13 H 0.084 0.916 14 C 0.067 3.933 15 N -0.704 5.704 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.264 1.264 20 N -0.487 5.487 21 C 0.168 3.832 22 C -0.097 4.097 23 C -0.092 4.092 24 C -0.150 4.150 25 C -0.174 4.174 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.275 0.725 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.137 -1.361 -2.617 12.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.089 3.911 4 C -0.256 4.256 5 C -0.101 4.101 6 C -0.182 4.182 7 C 0.063 3.937 8 C -0.275 4.275 9 C -0.058 4.058 10 C -0.297 4.297 11 C 0.133 3.867 12 C -0.448 4.448 13 H 0.102 0.898 14 C -0.160 4.160 15 N -0.324 5.324 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.188 1.188 20 N -0.199 5.199 21 C 0.000 4.000 22 C -0.098 4.098 23 C -0.110 4.110 24 C -0.187 4.187 25 C -0.211 4.211 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.458 -2.180 -1.844 11.809 hybrid contribution -0.132 0.776 -0.553 0.961 sum -11.590 -1.404 -2.396 11.918 Atomic orbital electron populations 1.22953 0.79649 1.03177 1.00880 1.86125 1.20162 1.27122 1.88891 1.18710 0.91468 0.83793 0.97083 1.21004 0.99062 0.92440 1.13129 1.20733 0.94591 0.96383 0.98439 1.21209 0.93077 0.98200 1.05763 1.18572 0.93208 0.90305 0.91593 1.18858 0.89964 1.11707 1.06977 1.20533 0.94096 0.95286 0.95918 1.21373 0.93958 1.08788 1.05618 1.18608 0.93664 0.87384 0.87043 1.19673 0.90596 1.21420 1.13105 0.89753 1.26131 1.00841 0.94296 0.94740 1.70115 1.37174 1.14982 1.10106 0.86371 0.82054 0.79367 0.79004 1.18844 1.20093 1.18820 1.68808 1.05800 1.20823 1.24420 1.22630 0.90931 0.92743 0.93684 1.18632 0.89163 0.94082 1.07932 1.20470 1.01038 0.94781 0.94686 1.22909 0.92167 1.01848 1.01779 1.22902 1.01098 0.96620 1.00468 0.93122 0.93180 0.88843 0.86460 0.86710 0.86354 0.88832 0.88407 0.91316 0.86579 0.87817 0.88685 0.88983 0.89599 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.57 9.49 -19.43 -0.18 -4.75 16 3 C 0.13 2.20 6.60 -39.27 -0.26 1.94 16 4 C -0.24 -3.46 9.04 -39.32 -0.36 -3.82 16 5 C -0.08 -1.23 10.03 -39.66 -0.40 -1.63 16 6 C -0.16 -2.82 9.54 -39.16 -0.37 -3.19 16 7 C 0.06 1.23 5.45 -104.90 -0.57 0.66 16 8 C -0.27 -5.82 3.55 -104.45 -0.37 -6.19 16 9 C -0.03 -0.76 9.60 -39.38 -0.38 -1.14 16 10 C -0.27 -6.51 9.76 -39.15 -0.38 -6.89 16 11 C 0.26 6.75 6.55 -84.98 -0.56 6.19 16 12 C -0.42 -10.78 9.12 -37.84 -0.35 -11.13 16 13 H 0.08 2.03 7.85 -52.49 -0.41 1.61 16 14 C 0.07 1.64 5.50 -17.33 -0.10 1.54 16 15 N -0.70 -18.11 11.44 55.55 0.64 -17.48 16 16 Si 0.91 17.97 29.56 -169.99 -5.02 12.94 16 17 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 20 N -0.49 -12.89 7.83 -10.84 -0.08 -12.98 16 21 C 0.17 3.97 8.58 -17.13 -0.15 3.82 16 22 C -0.10 -1.77 5.41 -104.07 -0.56 -2.34 16 23 C -0.09 -1.64 3.73 -91.77 -0.34 -1.98 16 24 C -0.15 -2.78 7.89 -26.69 -0.21 -2.99 16 25 C -0.17 -2.80 9.70 -26.69 -0.26 -3.06 16 26 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 27 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.12 1.38 6.28 -52.48 -0.33 1.05 16 30 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 31 H 0.12 1.95 8.05 -52.48 -0.42 1.53 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.28 6.44 8.29 -40.82 -0.34 6.11 16 35 H 0.12 2.62 7.13 -52.49 -0.37 2.25 16 36 H 0.10 1.86 7.92 -51.93 -0.41 1.45 16 37 H 0.09 1.92 7.29 -51.93 -0.38 1.54 16 38 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 334.39 15.07 5.04 5.04 Total: -1.00 -27.98 334.39 -9.45 -37.44 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.22 Total: 8.71 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -4.62 Total: -28.92 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.55 Total: -30.45 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.18 Total: -4.75 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.02 Total: 12.94 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.98 -9.45 -37.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244248373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.842 kcal (2) G-P(sol) polarization free energy of solvation -27.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds