Wall clock time and date at job start Tue Mar 31 2020 06:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99748 * 2 1 4 4 C 1.38906 * 119.98476 * 359.97438 * 3 2 1 5 5 C 1.38287 * 120.24123 * 180.02562 * 4 3 2 6 6 C 1.37984 * 120.19796 * 359.68998 * 5 4 3 7 7 C 1.39630 * 119.96662 * 0.58816 * 6 5 4 8 8 C 1.47967 * 120.11791 * 179.71972 * 7 6 5 9 9 C 1.40260 * 120.35056 * 309.71774 * 8 7 6 10 10 C 1.36682 * 118.61068 * 180.02562 * 9 8 7 11 11 C 1.40879 * 119.25186 * 359.97438 * 10 9 8 12 12 C 1.40988 * 119.67842 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00432 * 359.97438 * 12 11 10 14 14 C 1.40100 * 119.99784 * 180.02562 * 12 11 10 15 15 N 1.30714 * 119.99905 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00064 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47314 * 60.00138 * 16 14 12 18 18 H 1.48511 * 109.47056 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47484 * 299.99952 * 16 14 12 20 20 N 1.33779 * 120.63469 * 359.97438 * 11 10 9 21 21 C 1.31186 * 121.50886 * 359.74629 * 20 11 10 22 22 C 1.38418 * 119.98181 * 179.97438 * 3 2 1 23 23 C 1.50694 * 120.10234 * 0.02562 * 22 3 2 24 24 C 1.53002 * 117.49994 * 129.86863 * 23 22 3 25 25 C 1.53004 * 117.49752 * 61.20708 * 23 22 3 26 26 H 1.09001 * 109.47349 * 299.99840 * 1 2 3 27 27 H 1.09004 * 109.47353 * 60.00286 * 1 2 3 28 28 H 1.09001 * 109.46909 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.88051 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.90027 * 179.97438 * 5 4 3 31 31 H 1.08007 * 120.01835 * 180.30236 * 6 5 4 32 32 H 1.08000 * 120.68996 * 0.02562 * 9 8 7 33 33 H 1.08001 * 120.37392 * 179.97438 * 10 9 8 34 34 H 0.97008 * 119.99623 * 180.02562 * 15 14 12 35 35 H 1.08000 * 119.65952 * 180.26406 * 21 20 11 36 36 H 1.09001 * 115.55234 * 275.53808 * 23 22 3 37 37 H 1.08997 * 117.49712 * 359.97438 * 24 23 22 38 38 H 1.08997 * 117.50107 * 145.02094 * 24 23 22 39 39 H 1.09004 * 117.49743 * 214.97823 * 25 23 22 40 40 H 1.08992 * 117.49892 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2890 2.3756 -0.0005 5 6 1.9112 3.6106 -0.0011 6 6 3.2885 3.6938 0.0054 7 6 4.0577 2.5285 0.0000 8 6 5.5349 2.6139 0.0007 9 6 6.1979 3.4312 -0.9264 10 6 7.5634 3.4830 -0.8944 11 6 8.2590 2.7190 0.0632 12 6 9.6675 2.7661 0.1047 13 1 10.2080 3.3854 -0.5958 14 6 10.3660 2.0086 1.0539 15 7 9.7119 1.2587 1.9014 16 14 12.2322 2.0704 1.1084 17 1 12.6740 3.4645 1.3663 18 1 12.7252 1.1864 2.1951 19 1 12.7810 1.6099 -0.1924 20 7 7.5959 1.9501 0.9343 21 6 6.2857 1.8841 0.9315 22 6 3.4282 1.2830 0.0005 23 6 4.2508 0.0204 0.0005 24 6 5.3658 -0.0964 -1.0407 25 6 4.0892 -0.9281 -1.1892 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2106 2.3165 -0.0014 30 1 1.3173 4.5127 -0.0019 31 1 3.7715 4.6599 0.0099 32 1 5.6411 4.0076 -1.6504 33 1 8.1030 4.1027 -1.5954 34 1 10.1956 0.7345 2.5589 35 1 5.7807 1.2567 1.6512 36 1 4.4276 -0.4256 0.9793 37 1 5.5040 0.7399 -1.7260 38 1 6.2759 -0.6194 -0.7471 39 1 4.1601 -1.9980 -0.9931 40 1 3.3876 -0.6390 -1.9715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244248373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:45 Heat of formation + Delta-G solvation = 31.180120 kcal Electronic energy + Delta-G solvation = -23136.452276 eV Core-core repulsion = 19881.501255 eV Total energy + Delta-G solvation = -3254.951021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36263 -40.01025 -38.42564 -37.36011 -35.55030 -33.14193 -32.37487 -31.28888 -30.19635 -28.12313 -27.21546 -24.83401 -23.91967 -23.20946 -22.99655 -21.91744 -21.12802 -19.39277 -18.65703 -17.49340 -17.20592 -16.81103 -16.49426 -16.15523 -16.02620 -15.83677 -15.70975 -15.00097 -14.54773 -14.40462 -13.97752 -13.90335 -13.49692 -13.22743 -13.06042 -12.83793 -12.74759 -12.64021 -12.51177 -12.38803 -12.17538 -11.89157 -11.80511 -11.62264 -11.38692 -11.11216 -10.92178 -10.20612 -9.86696 -9.44311 -9.11528 -8.91195 -8.30006 -6.47919 0.25500 0.58849 1.03107 1.26277 1.40615 1.52882 1.56615 2.21790 2.49867 2.78397 2.94258 3.02512 3.75438 3.95208 3.98879 4.11821 4.12557 4.19070 4.24793 4.35033 4.41295 4.46533 4.48190 4.59868 4.63746 4.76784 4.79392 4.80984 4.92677 4.98947 5.01133 5.18174 5.19904 5.22491 5.28744 5.45598 5.51439 5.55991 5.66113 5.73462 5.99692 6.03604 6.13992 6.29026 6.60907 6.71421 6.96227 8.20203 8.42026 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.004089 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.828202 B = 6846.448558 C = 7431.404307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.326 6.326 3 C 0.132 3.868 4 C -0.224 4.224 5 C -0.075 4.075 6 C -0.173 4.173 7 C 0.032 3.968 8 C -0.244 4.244 9 C -0.038 4.038 10 C -0.288 4.288 11 C 0.226 3.774 12 C -0.460 4.460 13 H 0.090 0.910 14 C 0.024 3.976 15 N -0.748 5.748 16 Si 0.986 3.014 17 H -0.258 1.258 18 H -0.269 1.269 19 H -0.258 1.258 20 N -0.517 5.517 21 C 0.151 3.849 22 C -0.113 4.113 23 C -0.096 4.096 24 C -0.164 4.164 25 C -0.143 4.143 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.280 0.720 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.986 -1.049 -3.228 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.239 6.239 3 C 0.086 3.914 4 C -0.242 4.242 5 C -0.093 4.093 6 C -0.191 4.191 7 C 0.031 3.969 8 C -0.249 4.249 9 C -0.061 4.061 10 C -0.310 4.310 11 C 0.102 3.898 12 C -0.490 4.490 13 H 0.108 0.892 14 C -0.198 4.198 15 N -0.370 5.370 16 Si 0.806 3.194 17 H -0.182 1.182 18 H -0.193 1.193 19 H -0.182 1.182 20 N -0.229 5.229 21 C -0.015 4.015 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.201 4.201 25 C -0.179 4.179 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.134 0.866 29 H 0.172 0.828 30 H 0.170 0.830 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.357 -1.872 -2.457 14.685 hybrid contribution 0.356 0.656 -0.404 0.848 sum -14.001 -1.216 -2.861 14.342 Atomic orbital electron populations 1.23315 0.76974 1.05247 1.02106 1.86105 1.22877 1.26385 1.88546 1.18765 0.90902 0.85207 0.96498 1.21445 1.00855 0.91503 1.10432 1.21116 0.93648 0.98070 0.96452 1.21318 0.94388 0.97404 1.05993 1.18522 0.91744 0.91925 0.94744 1.19057 0.91763 1.09163 1.04888 1.20828 0.93623 0.95418 0.96275 1.21545 0.94953 1.08966 1.05565 1.19004 0.94525 0.88262 0.87982 1.20004 0.91014 1.23266 1.14744 0.89160 1.27018 1.05837 0.93243 0.93716 1.70220 1.39286 1.16271 1.11174 0.85204 0.75437 0.79547 0.79185 1.18218 1.19287 1.18250 1.68717 1.07125 1.21751 1.25346 1.22713 0.90548 0.93664 0.94620 1.18673 0.90522 0.93396 1.08794 1.20478 1.00588 0.95751 0.94617 1.22651 0.92580 1.02234 1.02671 1.22924 0.98571 0.97206 0.99244 0.91890 0.91748 0.86642 0.82842 0.83020 0.86115 0.86172 0.87307 0.90938 0.86654 0.88602 0.90749 0.90965 0.87647 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.56 9.49 -92.43 -0.88 -9.44 16 3 C 0.13 3.93 6.60 22.47 0.15 4.08 16 4 C -0.22 -5.53 9.04 22.44 0.20 -5.32 16 5 C -0.08 -1.91 10.03 22.22 0.22 -1.69 16 6 C -0.17 -5.57 9.54 22.55 0.22 -5.35 16 7 C 0.03 1.20 5.45 -20.04 -0.11 1.09 16 8 C -0.24 -10.78 3.55 -19.75 -0.07 -10.85 16 9 C -0.04 -1.67 9.60 22.40 0.22 -1.46 16 10 C -0.29 -14.16 9.76 22.55 0.22 -13.94 16 11 C 0.23 12.57 6.55 40.17 0.26 12.83 16 12 C -0.46 -24.92 9.12 23.40 0.21 -24.71 16 13 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 14 C 0.02 1.25 5.50 85.31 0.47 1.72 16 15 N -0.75 -40.53 11.44 21.85 0.25 -40.28 16 16 Si 0.99 37.96 29.56 68.60 2.03 39.99 16 17 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 18 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 19 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 20 N -0.52 -29.04 7.83 -188.22 -1.47 -30.51 16 21 C 0.15 7.49 8.58 85.24 0.73 8.22 16 22 C -0.11 -4.02 5.41 -19.51 -0.11 -4.13 16 23 C -0.10 -3.48 3.73 -11.54 -0.04 -3.52 16 24 C -0.16 -6.33 7.89 30.62 0.24 -6.09 16 25 C -0.14 -4.47 9.70 30.62 0.30 -4.17 16 26 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 27 H 0.06 0.84 7.66 -2.39 -0.02 0.83 16 28 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.15 2.68 6.28 -2.91 -0.02 2.66 16 30 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 31 H 0.12 3.76 8.05 -2.91 -0.02 3.74 16 32 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 33 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 34 H 0.28 13.74 8.29 -92.70 -0.77 12.97 16 35 H 0.12 5.57 7.13 -2.91 -0.02 5.55 16 36 H 0.10 3.55 7.92 -2.39 -0.02 3.53 16 37 H 0.07 3.15 7.29 -2.39 -0.02 3.13 16 38 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 40 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -64.35 334.39 5.20 -59.16 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 1.05 Total: 32.99 kcal Atomic # 6 Polarization: -56.13 SS G_CDS: 4.22 Total: -51.91 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -1.22 Total: -70.79 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.88 Total: -9.44 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -64.35 5.20 -59.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244248373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.336 kcal (2) G-P(sol) polarization free energy of solvation -64.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds