Wall clock time and date at job start Tue Mar 31 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 117.00341 * 2 1 4 4 C 1.38832 * 119.99289 * 359.72439 * 3 2 1 5 5 C 1.38209 * 120.18548 * 179.72634 * 4 3 2 6 6 C 1.38066 * 120.18045 * 0.54897 * 5 4 3 7 7 C 1.39337 * 119.98721 * 359.72541 * 6 5 4 8 8 C 1.48417 * 120.09079 * 180.02562 * 7 6 5 9 9 C 1.39713 * 120.40867 * 129.69872 * 8 7 6 10 10 N 1.31910 * 121.15113 * 179.76516 * 9 8 7 11 11 C 1.31527 * 122.11933 * 0.50518 * 10 9 8 12 12 C 1.40766 * 120.66400 * 359.76779 * 11 10 9 13 13 C 1.41440 * 120.60479 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00041 * 154.85606 * 13 12 11 15 15 C 1.39938 * 119.99723 * 334.84830 * 13 12 11 16 16 N 1.30831 * 119.99920 * 343.34489 * 15 13 12 17 17 Si 1.86796 * 119.99969 * 163.34340 * 15 13 12 18 18 H 1.48502 * 109.47284 * 95.01545 * 17 15 13 19 19 H 1.48501 * 109.47022 * 215.01409 * 17 15 13 20 20 H 1.48500 * 109.47024 * 335.01414 * 17 15 13 21 21 C 1.39131 * 120.41255 * 309.98106 * 8 7 6 22 22 C 1.38504 * 120.00338 * 179.97438 * 3 2 1 23 23 C 1.50706 * 120.08391 * 0.02562 * 22 3 2 24 24 C 1.52996 * 117.49625 * 129.76080 * 23 22 3 25 25 C 1.52998 * 117.49604 * 61.09870 * 23 22 3 26 26 H 1.08999 * 109.47524 * 300.00694 * 1 2 3 27 27 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46961 * 60.00199 * 1 2 3 29 29 H 1.08002 * 119.90770 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.90802 * 180.25151 * 5 4 3 31 31 H 1.07993 * 120.01011 * 179.74795 * 6 5 4 32 32 H 1.08002 * 119.42094 * 0.02562 * 9 8 7 33 33 H 1.08004 * 119.66832 * 179.74417 * 11 10 9 34 34 H 0.97000 * 119.99679 * 180.02562 * 16 15 13 35 35 H 1.07996 * 120.94919 * 359.97438 * 21 8 7 36 36 H 1.09001 * 115.54772 * 275.43201 * 23 22 3 37 37 H 1.09001 * 117.49927 * 0.02562 * 24 23 22 38 38 H 1.08997 * 117.49921 * 145.02139 * 24 23 22 39 39 H 1.08998 * 117.50018 * 214.97089 * 25 23 22 40 40 H 1.08995 * 117.50057 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2898 2.3752 -0.0058 5 6 1.9132 3.6087 -0.0001 6 6 3.2915 3.6899 -0.0001 7 6 4.0576 2.5261 0.0000 8 6 5.5394 2.6107 0.0006 9 6 6.2889 1.8824 0.9278 10 7 7.6066 1.9431 0.9386 11 6 8.2790 2.6923 0.0922 12 6 7.6068 3.4647 -0.8738 13 6 8.3312 4.2704 -1.7830 14 1 7.8991 4.5285 -2.7385 15 6 9.6076 4.7332 -1.4444 16 7 10.0026 4.7092 -0.1973 17 14 10.7476 5.3853 -2.7728 18 1 10.6206 6.8627 -2.8526 19 1 12.1499 5.0262 -2.4416 20 1 10.3784 4.7853 -4.0800 21 6 6.1990 3.4207 -0.9184 22 6 3.4292 1.2834 0.0005 23 6 4.2518 0.0206 0.0005 24 6 5.3651 -0.0971 -1.0423 25 6 4.0883 -0.9290 -1.1879 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 0.2114 2.3168 -0.0107 30 1 1.3205 4.5116 -0.0005 31 1 3.7757 4.6552 0.0003 32 1 5.7808 1.2555 1.6457 33 1 9.3578 2.7155 0.1390 34 1 10.8873 5.0304 0.0374 35 1 5.6478 3.9991 -1.6450 36 1 4.4301 -0.4243 0.9795 37 1 5.5028 0.7388 -1.7281 38 1 6.2756 -0.6199 -0.7497 39 1 4.1595 -1.9986 -0.9909 40 1 3.3854 -0.6407 -1.9695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244248451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:48 Heat of formation + Delta-G solvation = 34.525277 kcal Electronic energy + Delta-G solvation = -23097.362009 eV Core-core repulsion = 19842.556045 eV Total energy + Delta-G solvation = -3254.805964 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.24318 -38.52253 -37.16473 -36.16662 -33.99068 -32.00745 -30.62357 -30.08417 -28.16513 -27.18170 -25.60855 -23.57317 -22.78774 -21.67269 -21.19639 -20.67194 -19.91633 -17.91076 -16.84812 -16.10476 -15.84447 -15.56727 -15.51345 -15.16687 -14.71028 -14.41723 -14.08673 -13.72765 -13.47935 -13.02390 -12.53771 -12.21984 -12.14541 -11.84238 -11.64945 -11.49758 -11.35468 -11.19638 -11.07985 -10.94821 -10.88773 -10.70901 -10.59213 -10.11938 -10.04862 -9.64715 -9.38665 -8.77048 -8.17731 -7.91457 -7.75573 -7.32087 -6.90023 -4.49349 1.45804 1.71487 2.67658 2.84455 3.03065 3.07235 3.16939 3.40928 3.85604 4.04828 4.28577 4.60242 4.87631 4.98593 5.09735 5.11973 5.28130 5.36819 5.41838 5.44051 5.52898 5.65808 5.75922 5.81076 5.89848 6.03606 6.11566 6.25865 6.38033 6.44207 6.52189 6.55219 6.66717 6.70152 6.72087 6.81370 6.98497 7.06166 7.12265 7.29746 7.57349 7.62302 7.74117 8.05043 8.30359 8.67779 8.71370 9.71711 10.07318 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.024694 B = 0.004074 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.607107 B = 6871.519467 C = 7307.993669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.308 6.308 3 C 0.130 3.870 4 C -0.223 4.223 5 C -0.085 4.085 6 C -0.147 4.147 7 C 0.030 3.970 8 C -0.078 4.078 9 C -0.005 4.005 10 N -0.478 5.478 11 C 0.050 3.950 12 C 0.063 3.937 13 C -0.454 4.454 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.792 5.792 17 Si 0.911 3.089 18 H -0.270 1.270 19 H -0.274 1.274 20 H -0.260 1.260 21 C -0.178 4.178 22 C -0.082 4.082 23 C -0.095 4.095 24 C -0.152 4.152 25 C -0.172 4.172 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.149 0.851 34 H 0.284 0.716 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.345 -4.946 -1.133 14.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.222 6.222 3 C 0.085 3.915 4 C -0.242 4.242 5 C -0.104 4.104 6 C -0.165 4.165 7 C 0.029 3.971 8 C -0.080 4.080 9 C -0.160 4.160 10 N -0.186 5.186 11 C -0.113 4.113 12 C 0.059 3.941 13 C -0.484 4.484 14 H 0.098 0.902 15 C -0.143 4.143 16 N -0.417 5.417 17 Si 0.735 3.265 18 H -0.195 1.195 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.203 4.203 22 C -0.083 4.083 23 C -0.113 4.113 24 C -0.189 4.189 25 C -0.209 4.209 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.167 0.833 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.638 -5.580 -0.351 13.819 hybrid contribution -0.326 1.215 -1.094 1.668 sum -12.963 -4.364 -1.446 13.754 Atomic orbital electron populations 1.22983 0.79420 1.03360 1.00982 1.86125 1.20329 1.26867 1.88853 1.18678 0.91386 0.83987 0.97401 1.21085 0.99358 0.92410 1.11317 1.20790 0.94489 0.96645 0.98432 1.21203 0.93224 0.98310 1.03773 1.18700 0.93269 0.90988 0.94114 1.19145 0.89852 1.00120 0.98927 1.21756 0.89646 1.03548 1.01064 1.67169 1.08613 1.19144 1.23637 1.23055 0.99712 0.94250 0.94307 1.18432 0.91086 0.91460 0.93129 1.19501 0.99366 1.27063 1.02476 0.90179 1.25938 0.98389 0.94016 0.95957 1.69765 1.19673 1.34553 1.17692 0.86243 0.79177 0.79449 0.81607 1.19520 1.19856 1.18343 1.21339 0.94130 1.03126 1.01748 1.18545 0.89388 0.93900 1.06434 1.20511 1.01107 0.94784 0.94925 1.22943 0.92257 1.02085 1.01656 1.22917 1.00978 0.96674 1.00293 0.93021 0.88686 0.93061 0.86064 0.86192 0.85693 0.86482 0.83342 0.90451 0.87986 0.87536 0.88572 0.88924 0.89401 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.26 9.49 -19.44 -0.18 -4.45 16 3 C 0.13 2.02 6.61 -39.26 -0.26 1.76 16 4 C -0.22 -3.07 9.03 -39.37 -0.36 -3.43 16 5 C -0.09 -1.22 10.03 -39.66 -0.40 -1.62 16 6 C -0.15 -2.50 9.53 -39.24 -0.37 -2.88 16 7 C 0.03 0.57 5.45 -104.92 -0.57 0.00 16 8 C -0.08 -1.70 3.52 -104.82 -0.37 -2.07 16 9 C -0.01 -0.12 8.58 -16.97 -0.15 -0.27 16 10 N -0.48 -12.00 10.32 -12.28 -0.13 -12.12 16 11 C 0.05 1.31 9.88 -16.73 -0.17 1.14 16 12 C 0.06 1.63 5.58 -106.71 -0.60 1.03 16 13 C -0.45 -11.52 9.08 -37.73 -0.34 -11.87 16 14 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 15 C 0.08 1.82 5.17 -17.34 -0.09 1.73 16 16 N -0.79 -19.82 10.95 55.55 0.61 -19.21 16 17 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 C -0.18 -4.19 9.42 -38.24 -0.36 -4.55 16 22 C -0.08 -1.43 5.41 -104.14 -0.56 -2.00 16 23 C -0.10 -1.60 3.72 -91.77 -0.34 -1.94 16 24 C -0.15 -2.67 7.88 -26.69 -0.21 -2.88 16 25 C -0.17 -2.59 9.69 -26.69 -0.26 -2.85 16 26 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.42 7.65 -51.92 -0.40 0.03 16 29 H 0.12 1.32 6.28 -52.49 -0.33 0.99 16 30 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 31 H 0.13 2.10 8.04 -52.49 -0.42 1.68 16 32 H 0.12 2.49 7.11 -52.49 -0.37 2.12 16 33 H 0.15 3.99 6.17 -52.48 -0.32 3.67 16 34 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 35 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 36 H 0.11 1.75 7.91 -51.93 -0.41 1.34 16 37 H 0.10 1.89 7.29 -51.93 -0.38 1.51 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 39 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -27.55 333.07 -9.24 -36.79 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.12 Total: 10.47 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -4.41 Total: -29.43 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.48 Total: -31.33 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.18 Total: -4.45 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.55 -9.24 -36.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244248451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.313 kcal (2) G-P(sol) polarization free energy of solvation -27.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds