Wall clock time and date at job start Tue Mar 31 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35905 * 117.00341 * 2 1 4 4 C 1.38832 * 119.99289 * 359.72439 * 3 2 1 5 5 C 1.38209 * 120.18548 * 179.72634 * 4 3 2 6 6 C 1.38066 * 120.18045 * 0.54897 * 5 4 3 7 7 C 1.39337 * 119.98721 * 359.72541 * 6 5 4 8 8 C 1.48417 * 120.09079 * 180.02562 * 7 6 5 9 9 C 1.39713 * 120.40867 * 129.69872 * 8 7 6 10 10 N 1.31910 * 121.15113 * 179.76516 * 9 8 7 11 11 C 1.31527 * 122.11933 * 0.50518 * 10 9 8 12 12 C 1.40766 * 120.66400 * 359.76779 * 11 10 9 13 13 C 1.41440 * 120.60479 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00041 * 154.85606 * 13 12 11 15 15 C 1.39938 * 119.99723 * 334.84830 * 13 12 11 16 16 N 1.30831 * 119.99920 * 343.34489 * 15 13 12 17 17 Si 1.86796 * 119.99969 * 163.34340 * 15 13 12 18 18 H 1.48502 * 109.47284 * 95.01545 * 17 15 13 19 19 H 1.48501 * 109.47022 * 215.01409 * 17 15 13 20 20 H 1.48500 * 109.47024 * 335.01414 * 17 15 13 21 21 C 1.39131 * 120.41255 * 309.98106 * 8 7 6 22 22 C 1.38504 * 120.00338 * 179.97438 * 3 2 1 23 23 C 1.50706 * 120.08391 * 0.02562 * 22 3 2 24 24 C 1.52996 * 117.49625 * 129.76080 * 23 22 3 25 25 C 1.52998 * 117.49604 * 61.09870 * 23 22 3 26 26 H 1.08999 * 109.47524 * 300.00694 * 1 2 3 27 27 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46961 * 60.00199 * 1 2 3 29 29 H 1.08002 * 119.90770 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.90802 * 180.25151 * 5 4 3 31 31 H 1.07993 * 120.01011 * 179.74795 * 6 5 4 32 32 H 1.08002 * 119.42094 * 0.02562 * 9 8 7 33 33 H 1.08004 * 119.66832 * 179.74417 * 11 10 9 34 34 H 0.97000 * 119.99679 * 180.02562 * 16 15 13 35 35 H 1.07996 * 120.94919 * 359.97438 * 21 8 7 36 36 H 1.09001 * 115.54772 * 275.43201 * 23 22 3 37 37 H 1.09001 * 117.49927 * 0.02562 * 24 23 22 38 38 H 1.08997 * 117.49921 * 145.02139 * 24 23 22 39 39 H 1.08998 * 117.50018 * 214.97089 * 25 23 22 40 40 H 1.08995 * 117.50057 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2898 2.3752 -0.0058 5 6 1.9132 3.6087 -0.0001 6 6 3.2915 3.6899 -0.0001 7 6 4.0576 2.5261 0.0000 8 6 5.5394 2.6107 0.0006 9 6 6.2889 1.8824 0.9278 10 7 7.6066 1.9431 0.9386 11 6 8.2790 2.6923 0.0922 12 6 7.6068 3.4647 -0.8738 13 6 8.3312 4.2704 -1.7830 14 1 7.8991 4.5285 -2.7385 15 6 9.6076 4.7332 -1.4444 16 7 10.0026 4.7092 -0.1973 17 14 10.7476 5.3853 -2.7728 18 1 10.6206 6.8627 -2.8526 19 1 12.1499 5.0262 -2.4416 20 1 10.3784 4.7853 -4.0800 21 6 6.1990 3.4207 -0.9184 22 6 3.4292 1.2834 0.0005 23 6 4.2518 0.0206 0.0005 24 6 5.3651 -0.0971 -1.0423 25 6 4.0883 -0.9290 -1.1879 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 0.2114 2.3168 -0.0107 30 1 1.3205 4.5116 -0.0005 31 1 3.7757 4.6552 0.0003 32 1 5.7808 1.2555 1.6457 33 1 9.3578 2.7155 0.1390 34 1 10.8873 5.0304 0.0374 35 1 5.6478 3.9991 -1.6450 36 1 4.4301 -0.4243 0.9795 37 1 5.5028 0.7388 -1.7281 38 1 6.2756 -0.6199 -0.7497 39 1 4.1595 -1.9986 -0.9909 40 1 3.3854 -0.6407 -1.9695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244248451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:48 Heat of formation + Delta-G solvation = 21.285002 kcal Electronic energy + Delta-G solvation = -23097.936151 eV Core-core repulsion = 19842.556045 eV Total energy + Delta-G solvation = -3255.380106 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.48830 -40.12439 -38.49590 -37.43097 -35.84468 -33.60685 -32.38588 -31.32934 -29.65672 -28.05408 -27.48483 -24.93727 -24.27489 -23.11250 -22.95899 -22.04341 -21.26933 -19.41220 -18.33563 -17.45813 -17.25700 -17.12424 -16.76077 -16.52615 -16.13862 -15.93718 -15.59173 -15.04881 -14.62893 -14.60354 -14.09038 -13.52750 -13.49203 -13.43916 -13.17463 -12.97008 -12.92156 -12.64434 -12.59245 -12.42167 -12.37922 -11.94326 -11.88328 -11.68292 -11.36441 -11.21083 -10.96112 -10.31008 -10.03434 -9.57178 -9.16640 -8.95633 -8.73100 -6.44410 0.10162 0.49461 0.90622 1.08187 1.39733 1.50991 1.56169 2.19325 2.43867 2.70328 2.82915 2.97724 3.68739 3.71059 3.84091 4.05827 4.07399 4.12062 4.25804 4.28677 4.42035 4.48171 4.50366 4.53602 4.58763 4.68033 4.78167 4.80182 4.81083 4.95915 5.04255 5.14704 5.19104 5.22639 5.27927 5.30429 5.38056 5.50378 5.61839 5.79241 5.86077 5.86780 6.15639 6.37114 6.54275 6.77478 6.79734 7.78863 8.26949 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.024694 B = 0.004074 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.607107 B = 6871.519467 C = 7307.993669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.322 6.322 3 C 0.131 3.869 4 C -0.209 4.209 5 C -0.076 4.076 6 C -0.162 4.162 7 C -0.002 4.002 8 C -0.056 4.056 9 C -0.010 4.010 10 N -0.491 5.491 11 C 0.020 3.980 12 C 0.043 3.957 13 C -0.485 4.485 14 H 0.082 0.918 15 C 0.037 3.963 16 N -0.823 5.823 17 Si 0.987 3.013 18 H -0.261 1.261 19 H -0.265 1.265 20 H -0.257 1.257 21 C -0.190 4.190 22 C -0.097 4.097 23 C -0.100 4.100 24 C -0.170 4.170 25 C -0.141 4.141 26 H 0.065 0.935 27 H 0.117 0.883 28 H 0.064 0.936 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.293 0.707 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.354 -5.155 -1.717 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.235 6.235 3 C 0.086 3.914 4 C -0.228 4.228 5 C -0.094 4.094 6 C -0.180 4.180 7 C -0.003 4.003 8 C -0.058 4.058 9 C -0.166 4.166 10 N -0.199 5.199 11 C -0.142 4.142 12 C 0.039 3.961 13 C -0.515 4.515 14 H 0.100 0.900 15 C -0.179 4.179 16 N -0.448 5.448 17 Si 0.807 3.193 18 H -0.186 1.186 19 H -0.190 1.190 20 H -0.181 1.181 21 C -0.216 4.216 22 C -0.097 4.097 23 C -0.117 4.117 24 C -0.207 4.207 25 C -0.178 4.178 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.083 0.917 29 H 0.177 0.823 30 H 0.173 0.827 31 H 0.136 0.864 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.657 -5.796 -0.928 16.721 hybrid contribution 0.348 1.194 -0.850 1.506 sum -15.310 -4.601 -1.777 16.085 Atomic orbital electron populations 1.23353 0.76772 1.05441 1.02214 1.86110 1.22993 1.25974 1.88436 1.18718 0.90779 0.85392 0.96553 1.21521 1.01209 0.91346 1.08680 1.21141 0.93280 0.98463 0.96530 1.21265 0.94749 0.97280 1.04723 1.18595 0.91455 0.92735 0.97551 1.19313 0.91986 0.97686 0.96858 1.22014 0.89037 1.03957 1.01590 1.67083 1.09871 1.19180 1.23721 1.22795 0.99138 0.96239 0.96047 1.18697 0.92219 0.91776 0.93433 1.19775 1.00857 1.28119 1.02725 0.89995 1.26822 0.99275 0.93699 0.98092 1.69826 1.20449 1.34951 1.19616 0.85118 0.76943 0.78962 0.78289 1.18574 1.18954 1.18108 1.21501 0.93610 1.03980 1.02459 1.18589 0.90801 0.93174 1.07181 1.20562 1.00490 0.95470 0.95217 1.22732 0.93140 1.02352 1.02510 1.22941 0.98397 0.97442 0.99014 0.91688 0.86456 0.91738 0.82260 0.82700 0.86450 0.85061 0.84989 0.89652 0.87419 0.87434 0.91400 0.89865 0.87067 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -7.75 9.49 -92.48 -0.88 -8.63 16 3 C 0.13 3.68 6.61 22.48 0.15 3.83 16 4 C -0.21 -4.89 9.03 22.40 0.20 -4.69 16 5 C -0.08 -1.93 10.03 22.22 0.22 -1.70 16 6 C -0.16 -5.37 9.53 22.49 0.21 -5.16 16 7 C 0.00 -0.09 5.45 -20.05 -0.11 -0.20 16 8 C -0.06 -2.55 3.52 -19.99 -0.07 -2.62 16 9 C -0.01 -0.48 8.58 85.04 0.73 0.25 16 10 N -0.49 -25.94 10.32 -192.77 -1.99 -27.93 16 11 C 0.02 1.10 9.88 85.36 0.84 1.95 16 12 C 0.04 2.34 5.58 -21.22 -0.12 2.22 16 13 C -0.49 -25.75 9.08 23.47 0.21 -25.53 16 14 H 0.08 4.15 7.90 -2.91 -0.02 4.13 16 15 C 0.04 1.82 5.17 85.25 0.44 2.27 16 16 N -0.82 -42.78 10.95 21.83 0.24 -42.54 16 17 Si 0.99 37.33 29.59 68.60 2.03 39.36 16 18 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 19 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 20 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 21 C -0.19 -9.39 9.42 23.14 0.22 -9.17 16 22 C -0.10 -3.29 5.41 -19.55 -0.11 -3.39 16 23 C -0.10 -3.30 3.72 -11.54 -0.04 -3.34 16 24 C -0.17 -6.12 7.88 30.62 0.24 -5.88 16 25 C -0.14 -4.06 9.69 30.62 0.30 -3.77 16 26 H 0.06 0.75 7.67 -2.39 -0.02 0.73 16 27 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 0.74 7.65 -2.38 -0.02 0.72 16 29 H 0.16 2.50 6.28 -2.91 -0.02 2.48 16 30 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.12 3.97 8.04 -2.91 -0.02 3.95 16 32 H 0.13 5.73 7.11 -2.91 -0.02 5.71 16 33 H 0.13 7.63 6.17 -2.91 -0.02 7.61 16 34 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 35 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 36 H 0.11 3.49 7.91 -2.39 -0.02 3.47 16 37 H 0.07 2.82 7.29 -2.39 -0.02 2.80 16 38 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -63.02 333.07 4.89 -58.13 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 1.05 Total: 35.20 kcal Atomic # 6 Polarization: -58.04 SS G_CDS: 4.44 Total: -53.60 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -1.75 Total: -70.47 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.88 Total: -8.63 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -63.02 4.89 -58.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244248451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.417 kcal (2) G-P(sol) polarization free energy of solvation -63.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds