Wall clock time and date at job start Tue Mar 31 2020 06:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35900 * 117.00384 * 2 1 4 4 C 1.38922 * 119.97601 * 0.02562 * 3 2 1 5 5 C 1.38294 * 120.25112 * 180.02562 * 4 3 2 6 6 C 1.37969 * 120.21066 * 0.02562 * 5 4 3 7 7 C 1.39691 * 119.95479 * 359.97438 * 6 5 4 8 8 C 1.47826 * 120.12533 * 180.02562 * 7 6 5 9 9 C 1.39673 * 120.65384 * 64.96781 * 8 7 6 10 10 C 1.38386 * 118.47932 * 180.02562 * 9 8 7 11 11 C 1.39062 * 119.72559 * 359.97438 * 10 9 8 12 12 N 1.31280 * 121.33732 * 359.74244 * 11 10 9 13 13 C 1.33700 * 121.63387 * 0.53085 * 12 11 10 14 14 C 1.40816 * 119.93902 * 179.75050 * 13 12 11 15 15 H 1.08007 * 120.00109 * 187.22053 * 14 13 12 16 16 C 1.40157 * 120.00089 * 7.22375 * 14 13 12 17 17 N 1.30685 * 120.00114 * 183.89816 * 16 14 13 18 18 Si 1.86796 * 119.99713 * 3.89409 * 16 14 13 19 19 H 1.48504 * 109.46874 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47387 * 300.00335 * 18 16 14 21 21 H 1.48505 * 109.47097 * 60.00325 * 18 16 14 22 22 C 1.38400 * 119.98318 * 180.29944 * 3 2 1 23 23 C 1.50696 * 120.10392 * 0.02562 * 22 3 2 24 24 C 1.53004 * 117.49786 * 312.55240 * 23 22 3 25 25 C 1.53002 * 117.49811 * 243.89253 * 23 22 3 26 26 H 1.08997 * 109.47533 * 299.99871 * 1 2 3 27 27 H 1.09004 * 109.47133 * 59.99879 * 1 2 3 28 28 H 1.09004 * 109.47434 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.87634 * 0.04167 * 4 3 2 30 30 H 1.08006 * 119.89649 * 180.02562 * 5 4 3 31 31 H 1.08000 * 120.02374 * 179.97438 * 6 5 4 32 32 H 1.08001 * 120.75556 * 0.02562 * 9 8 7 33 33 H 1.08002 * 120.14351 * 179.97438 * 10 9 8 34 34 H 1.08002 * 119.33304 * 179.97438 * 11 10 9 35 35 H 0.97008 * 120.00238 * 354.92653 * 17 16 14 36 36 H 1.08997 * 115.55225 * 98.22328 * 23 22 3 37 37 H 1.08999 * 117.49833 * 0.02562 * 24 23 22 38 38 H 1.09005 * 117.49438 * 145.02433 * 24 23 22 39 39 H 1.08997 * 117.50275 * 214.97751 * 25 23 22 40 40 H 1.09006 * 117.49844 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2889 2.3757 0.0005 5 6 1.9109 3.6108 0.0000 6 6 3.2881 3.6946 -0.0016 7 6 4.0578 2.5289 -0.0021 8 6 5.5336 2.6143 -0.0033 9 6 6.2160 3.1630 1.0849 10 6 7.5978 3.2212 1.0360 11 6 8.2692 2.7375 -0.0816 12 7 7.6190 2.2185 -1.0971 13 6 6.2843 2.1403 -1.1092 14 6 5.6230 1.5813 -2.2196 15 1 4.5457 1.6227 -2.2837 16 6 6.3629 0.9712 -3.2418 17 7 5.7562 0.5204 -4.3078 18 14 8.2162 0.8025 -3.0802 19 1 8.7588 0.1276 -4.2865 20 1 8.8265 2.1500 -2.9508 21 1 8.5367 -0.0038 -1.8749 22 6 3.4281 1.2828 -0.0063 23 6 4.2507 0.0201 -0.0137 24 6 3.8719 -1.0756 0.9848 25 6 5.1424 -0.2492 1.2001 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2106 2.3164 0.0016 30 1 1.3168 4.5128 0.0008 31 1 3.7707 4.6608 -0.0024 32 1 5.6775 3.5334 1.9447 33 1 8.1525 3.6405 1.8623 34 1 9.3476 2.7864 -0.1132 35 1 4.7878 0.5410 -4.3601 36 1 4.6206 -0.2943 -0.9896 37 1 3.0275 -0.8833 1.6467 38 1 3.9931 -2.1109 0.6658 39 1 6.0987 -0.7411 1.0228 40 1 5.1343 0.4871 2.0038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244252078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:51 Heat of formation + Delta-G solvation = 30.049360 kcal Electronic energy + Delta-G solvation = -24070.948089 eV Core-core repulsion = 20815.948034 eV Total energy + Delta-G solvation = -3255.000054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.07057 -38.64667 -37.03434 -35.97836 -33.86429 -32.09510 -30.92228 -29.93495 -28.52586 -27.04498 -25.56753 -23.21477 -22.82598 -21.72839 -21.18436 -20.50298 -19.60557 -18.36913 -17.43670 -15.87577 -15.75622 -15.59305 -15.36367 -14.98903 -14.57390 -14.39885 -13.77558 -13.65958 -13.32601 -12.85297 -12.59321 -12.31369 -12.26186 -12.00327 -11.89116 -11.64936 -11.40849 -11.02134 -10.79403 -10.69361 -10.64933 -10.34729 -10.08153 -9.88752 -9.57400 -9.47444 -9.26686 -8.66702 -8.25855 -7.72903 -7.67874 -7.64408 -7.23026 -4.78218 1.70912 1.92281 2.52131 2.62735 3.59270 3.60204 3.67115 4.00745 4.21569 4.42563 4.49511 4.61187 5.05557 5.17358 5.23982 5.28223 5.40171 5.49810 5.51992 5.60617 5.64240 5.72135 5.77728 5.86967 5.93625 6.10014 6.16272 6.19967 6.30427 6.42184 6.51204 6.56541 6.70341 6.73661 6.79628 6.95920 6.97759 7.13613 7.17852 7.38958 7.40964 7.47329 7.67481 7.80046 8.08055 8.26863 8.62222 9.44765 9.95563 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.006940 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.395412 B = 4033.424067 C = 4577.033674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.127 3.873 4 C -0.228 4.228 5 C -0.089 4.089 6 C -0.156 4.156 7 C 0.059 3.941 8 C -0.209 4.209 9 C -0.021 4.021 10 C -0.318 4.318 11 C 0.157 3.843 12 N -0.571 5.571 13 C 0.265 3.735 14 C -0.453 4.453 15 H 0.087 0.913 16 C 0.042 3.958 17 N -0.796 5.796 18 Si 1.149 2.851 19 H -0.333 1.333 20 H -0.276 1.276 21 H -0.293 1.293 22 C -0.070 4.070 23 C -0.082 4.082 24 C -0.175 4.175 25 C -0.162 4.162 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.284 0.716 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.237 0.684 8.413 11.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.082 3.918 4 C -0.246 4.246 5 C -0.107 4.107 6 C -0.174 4.174 7 C 0.058 3.942 8 C -0.213 4.213 9 C -0.045 4.045 10 C -0.341 4.341 11 C -0.006 4.006 12 N -0.289 5.289 13 C 0.143 3.857 14 C -0.483 4.483 15 H 0.105 0.895 16 C -0.180 4.180 17 N -0.416 5.416 18 Si 0.984 3.016 19 H -0.267 1.267 20 H -0.204 1.204 21 H -0.221 1.221 22 C -0.071 4.071 23 C -0.100 4.100 24 C -0.212 4.212 25 C -0.199 4.199 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.143 0.857 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.568 -0.358 6.818 8.810 hybrid contribution -2.419 1.196 1.531 3.102 sum -7.987 0.838 8.349 11.584 Atomic orbital electron populations 1.22956 0.79780 1.03193 1.00812 1.86160 1.20050 1.26938 1.88914 1.18720 0.91530 0.83888 0.97662 1.21044 0.99111 0.92438 1.12054 1.20695 0.94490 0.96416 0.99148 1.21192 0.93179 0.97971 1.05107 1.18320 0.92635 0.90526 0.92685 1.19003 0.90626 1.13645 0.98057 1.20927 0.93928 0.94042 0.95631 1.21021 0.94410 1.17010 1.01683 1.22170 0.98463 0.91236 0.88749 1.66628 1.09279 1.25403 1.27564 1.18482 0.86971 0.88815 0.91386 1.20785 0.96304 1.29032 1.02197 0.89481 1.27861 1.10623 0.89641 0.89880 1.70618 1.13458 1.31963 1.25598 0.81908 0.70297 0.77241 0.72158 1.26669 1.20394 1.22056 1.18678 0.89034 0.94222 1.05124 1.20669 1.00419 0.92928 0.95981 1.22882 0.98622 0.96083 1.03588 1.22787 0.94397 1.02582 1.00167 0.93259 0.93117 0.88819 0.86365 0.86626 0.86442 0.88169 0.87922 0.85658 0.90445 0.86061 0.89450 0.89611 0.89422 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -5.05 8.43 -19.42 -0.16 -5.22 16 3 C 0.13 2.30 6.52 -39.27 -0.26 2.04 16 4 C -0.23 -3.65 9.04 -39.31 -0.36 -4.00 16 5 C -0.09 -1.44 10.03 -39.66 -0.40 -1.83 16 6 C -0.16 -2.88 9.75 -39.14 -0.38 -3.26 16 7 C 0.06 1.23 4.41 -104.92 -0.46 0.76 16 8 C -0.21 -4.64 4.01 -104.07 -0.42 -5.06 16 9 C -0.02 -0.43 9.88 -38.99 -0.39 -0.82 16 10 C -0.32 -6.26 10.10 -39.22 -0.40 -6.66 16 11 C 0.16 3.34 11.17 -17.48 -0.20 3.15 16 12 N -0.57 -13.99 4.54 -10.91 -0.05 -14.04 16 13 C 0.27 6.58 5.99 -84.71 -0.51 6.07 16 14 C -0.45 -11.80 6.90 -37.89 -0.26 -12.06 16 15 H 0.09 2.35 6.40 -52.48 -0.34 2.02 16 16 C 0.04 1.12 5.52 -17.32 -0.10 1.02 16 17 N -0.80 -21.27 13.65 55.56 0.76 -20.51 16 18 Si 1.15 27.91 25.63 -169.99 -4.36 23.55 16 19 H -0.33 -8.08 7.11 56.52 0.40 -7.68 16 20 H -0.28 -6.69 6.60 56.52 0.37 -6.31 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C -0.07 -1.41 4.50 -104.05 -0.47 -1.88 16 23 C -0.08 -1.68 3.93 -91.77 -0.36 -2.04 16 24 C -0.17 -3.03 9.16 -26.69 -0.24 -3.27 16 25 C -0.16 -3.05 9.36 -26.69 -0.25 -3.30 16 26 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 27 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.12 1.54 6.28 -52.49 -0.33 1.21 16 30 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 35 H 0.28 7.37 8.72 -40.82 -0.36 7.01 16 36 H 0.12 2.82 6.65 -51.93 -0.35 2.48 16 37 H 0.09 1.46 7.46 -51.93 -0.39 1.07 16 38 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 40 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -28.19 326.82 -8.51 -36.70 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.18 Total: 4.42 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -4.44 Total: -29.83 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.71 Total: -34.55 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.16 Total: -5.22 kcal Atomic # 14 Polarization: 27.91 SS G_CDS: -4.36 Total: 23.55 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.19 -8.51 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244252078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.752 kcal (2) G-P(sol) polarization free energy of solvation -28.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds