Wall clock time and date at job start Tue Mar 31 2020 06:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35900 * 117.00384 * 2 1 4 4 C 1.38922 * 119.97601 * 0.02562 * 3 2 1 5 5 C 1.38294 * 120.25112 * 180.02562 * 4 3 2 6 6 C 1.37969 * 120.21066 * 0.02562 * 5 4 3 7 7 C 1.39691 * 119.95479 * 359.97438 * 6 5 4 8 8 C 1.47826 * 120.12533 * 180.02562 * 7 6 5 9 9 C 1.39673 * 120.65384 * 64.96781 * 8 7 6 10 10 C 1.38386 * 118.47932 * 180.02562 * 9 8 7 11 11 C 1.39062 * 119.72559 * 359.97438 * 10 9 8 12 12 N 1.31280 * 121.33732 * 359.74244 * 11 10 9 13 13 C 1.33700 * 121.63387 * 0.53085 * 12 11 10 14 14 C 1.40816 * 119.93902 * 179.75050 * 13 12 11 15 15 H 1.08007 * 120.00109 * 187.22053 * 14 13 12 16 16 C 1.40157 * 120.00089 * 7.22375 * 14 13 12 17 17 N 1.30685 * 120.00114 * 183.89816 * 16 14 13 18 18 Si 1.86796 * 119.99713 * 3.89409 * 16 14 13 19 19 H 1.48504 * 109.46874 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47387 * 300.00335 * 18 16 14 21 21 H 1.48505 * 109.47097 * 60.00325 * 18 16 14 22 22 C 1.38400 * 119.98318 * 180.29944 * 3 2 1 23 23 C 1.50696 * 120.10392 * 0.02562 * 22 3 2 24 24 C 1.53004 * 117.49786 * 312.55240 * 23 22 3 25 25 C 1.53002 * 117.49811 * 243.89253 * 23 22 3 26 26 H 1.08997 * 109.47533 * 299.99871 * 1 2 3 27 27 H 1.09004 * 109.47133 * 59.99879 * 1 2 3 28 28 H 1.09004 * 109.47434 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.87634 * 0.04167 * 4 3 2 30 30 H 1.08006 * 119.89649 * 180.02562 * 5 4 3 31 31 H 1.08000 * 120.02374 * 179.97438 * 6 5 4 32 32 H 1.08001 * 120.75556 * 0.02562 * 9 8 7 33 33 H 1.08002 * 120.14351 * 179.97438 * 10 9 8 34 34 H 1.08002 * 119.33304 * 179.97438 * 11 10 9 35 35 H 0.97008 * 120.00238 * 354.92653 * 17 16 14 36 36 H 1.08997 * 115.55225 * 98.22328 * 23 22 3 37 37 H 1.08999 * 117.49833 * 0.02562 * 24 23 22 38 38 H 1.09005 * 117.49438 * 145.02433 * 24 23 22 39 39 H 1.08997 * 117.50275 * 214.97751 * 25 23 22 40 40 H 1.09006 * 117.49844 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2889 2.3757 0.0005 5 6 1.9109 3.6108 0.0000 6 6 3.2881 3.6946 -0.0016 7 6 4.0578 2.5289 -0.0021 8 6 5.5336 2.6143 -0.0033 9 6 6.2160 3.1630 1.0849 10 6 7.5978 3.2212 1.0360 11 6 8.2692 2.7375 -0.0816 12 7 7.6190 2.2185 -1.0971 13 6 6.2843 2.1403 -1.1092 14 6 5.6230 1.5813 -2.2196 15 1 4.5457 1.6227 -2.2837 16 6 6.3629 0.9712 -3.2418 17 7 5.7562 0.5204 -4.3078 18 14 8.2162 0.8025 -3.0802 19 1 8.7588 0.1276 -4.2865 20 1 8.8265 2.1500 -2.9508 21 1 8.5367 -0.0038 -1.8749 22 6 3.4281 1.2828 -0.0063 23 6 4.2507 0.0201 -0.0137 24 6 3.8719 -1.0756 0.9848 25 6 5.1424 -0.2492 1.2001 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2106 2.3164 0.0016 30 1 1.3168 4.5128 0.0008 31 1 3.7707 4.6608 -0.0024 32 1 5.6775 3.5334 1.9447 33 1 8.1525 3.6405 1.8623 34 1 9.3476 2.7864 -0.1132 35 1 4.7878 0.5410 -4.3601 36 1 4.6206 -0.2943 -0.9896 37 1 3.0275 -0.8833 1.6467 38 1 3.9931 -2.1109 0.6658 39 1 6.0987 -0.7411 1.0228 40 1 5.1343 0.4871 2.0038 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244252078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:51 Heat of formation + Delta-G solvation = 16.374439 kcal Electronic energy + Delta-G solvation = -24071.541078 eV Core-core repulsion = 20815.948034 eV Total energy + Delta-G solvation = -3255.593044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45613 -40.24949 -38.41180 -37.40191 -35.74965 -33.66634 -32.66703 -31.26164 -30.05015 -28.07446 -27.33796 -24.71486 -24.31205 -23.26035 -22.88249 -21.94090 -21.07404 -20.27316 -18.74792 -17.42380 -17.16757 -17.04282 -16.68877 -16.49500 -15.98370 -15.87406 -15.60348 -15.11717 -14.70103 -14.42834 -14.27137 -14.11768 -13.69726 -13.58069 -13.28948 -12.98942 -12.63153 -12.58390 -12.46115 -12.29671 -11.98574 -11.87944 -11.69845 -11.52790 -11.26890 -11.23555 -10.91217 -10.35176 -9.89678 -9.54521 -9.34724 -9.11288 -8.98262 -6.67441 0.27463 0.55924 0.80463 0.92122 1.61421 1.74510 2.06759 2.45533 2.48232 2.71325 2.84714 3.02690 3.65597 3.74010 3.91779 4.06485 4.08633 4.14082 4.24512 4.30471 4.33314 4.41546 4.43220 4.54627 4.64979 4.71299 4.73619 4.74770 4.77662 4.86625 4.93604 5.15860 5.22862 5.25545 5.30223 5.43207 5.47411 5.51418 5.56262 5.66495 5.83574 5.94834 5.99056 6.13912 6.45740 6.57095 6.77055 7.66279 7.99589 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.006940 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.395412 B = 4033.424067 C = 4577.033674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.326 6.326 3 C 0.120 3.880 4 C -0.221 4.221 5 C -0.082 4.082 6 C -0.170 4.170 7 C 0.029 3.971 8 C -0.204 4.204 9 C -0.029 4.029 10 C -0.290 4.290 11 C 0.133 3.867 12 N -0.597 5.597 13 C 0.253 3.747 14 C -0.476 4.476 15 H 0.063 0.937 16 C 0.015 3.985 17 N -0.829 5.829 18 Si 1.183 2.817 19 H -0.337 1.337 20 H -0.275 1.275 21 H -0.297 1.297 22 C -0.093 4.093 23 C -0.099 4.099 24 C -0.147 4.147 25 C -0.161 4.161 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.116 0.884 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.158 0.842 35 H 0.277 0.723 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.395 2.006 11.214 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.075 3.925 4 C -0.239 4.239 5 C -0.099 4.099 6 C -0.188 4.188 7 C 0.028 3.972 8 C -0.208 4.208 9 C -0.053 4.053 10 C -0.312 4.312 11 C -0.028 4.028 12 N -0.315 5.315 13 C 0.130 3.870 14 C -0.508 4.508 15 H 0.081 0.919 16 C -0.202 4.202 17 N -0.453 5.453 18 Si 1.017 2.983 19 H -0.272 1.272 20 H -0.202 1.202 21 H -0.225 1.225 22 C -0.093 4.093 23 C -0.117 4.117 24 C -0.183 4.183 25 C -0.198 4.198 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.171 0.829 30 H 0.171 0.829 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.160 0.840 34 H 0.175 0.825 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.713 0.978 9.648 11.794 hybrid contribution -2.134 0.892 0.933 2.494 sum -8.847 1.869 10.581 13.918 Atomic orbital electron populations 1.23310 0.77113 1.05239 1.02016 1.86127 1.22811 1.26412 1.88662 1.18861 0.91160 0.85291 0.97228 1.21460 1.00818 0.91572 1.10085 1.21106 0.93754 0.97986 0.97088 1.21351 0.94424 0.97374 1.05656 1.18435 0.92121 0.91751 0.94871 1.19251 0.91885 1.12156 0.97500 1.21331 0.94510 0.93636 0.95870 1.21524 0.94410 1.13639 1.01646 1.22795 1.00149 0.91200 0.88652 1.66502 1.09360 1.26298 1.29369 1.18620 0.87579 0.88906 0.91877 1.20497 0.95103 1.31592 1.03594 0.91861 1.28447 1.12271 0.89484 0.89964 1.70649 1.12927 1.35097 1.26600 0.81431 0.68507 0.76884 0.71521 1.27151 1.20241 1.22493 1.18737 0.90308 0.93733 1.06557 1.20442 1.01952 0.94737 0.94570 1.22889 0.97877 0.95834 1.01735 1.22716 0.94552 1.03042 0.99515 0.91328 0.92430 0.86598 0.82871 0.82868 0.85861 0.85357 0.83970 0.82526 0.91236 0.90207 0.88247 0.88536 0.90352 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -10.25 8.43 -92.42 -0.78 -11.03 16 3 C 0.12 4.20 6.52 22.47 0.15 4.35 16 4 C -0.22 -6.43 9.04 22.45 0.20 -6.23 16 5 C -0.08 -2.38 10.03 22.22 0.22 -2.15 16 6 C -0.17 -6.02 9.75 22.56 0.22 -5.80 16 7 C 0.03 1.20 4.41 -20.06 -0.09 1.11 16 8 C -0.20 -9.01 4.01 -19.51 -0.08 -9.09 16 9 C -0.03 -1.12 9.88 22.65 0.22 -0.90 16 10 C -0.29 -10.41 10.10 22.50 0.23 -10.18 16 11 C 0.13 5.36 11.17 84.97 0.95 6.31 16 12 N -0.60 -29.22 4.54 -188.42 -0.86 -30.08 16 13 C 0.25 12.86 5.99 40.37 0.24 13.10 16 14 C -0.48 -26.22 6.90 23.37 0.16 -26.05 16 15 H 0.06 3.69 6.40 -2.91 -0.02 3.67 16 16 C 0.01 0.84 5.52 85.33 0.47 1.31 16 17 N -0.83 -47.22 13.65 21.86 0.30 -46.92 16 18 Si 1.18 58.87 25.63 68.60 1.76 60.62 16 19 H -0.34 -16.69 7.11 99.48 0.71 -15.98 16 20 H -0.27 -13.38 6.60 99.48 0.66 -12.72 16 21 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 22 C -0.09 -3.78 4.50 -19.49 -0.09 -3.86 16 23 C -0.10 -4.17 3.93 -11.54 -0.05 -4.21 16 24 C -0.15 -5.03 9.16 30.62 0.28 -4.75 16 25 C -0.16 -6.11 9.36 30.62 0.29 -5.82 16 26 H 0.07 1.11 7.65 -2.39 -0.02 1.09 16 27 H 0.06 1.07 7.66 -2.38 -0.02 1.06 16 28 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.15 3.31 6.28 -2.91 -0.02 3.29 16 30 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 32 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 33 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.16 5.22 8.06 -2.91 -0.02 5.19 16 35 H 0.28 15.52 8.72 -92.70 -0.81 14.72 16 36 H 0.08 4.02 6.65 -2.39 -0.02 4.00 16 37 H 0.10 3.17 7.46 -2.39 -0.02 3.15 16 38 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 39 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -64.61 326.82 5.83 -58.78 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.96 Total: 20.04 kcal Atomic # 6 Polarization: -55.86 SS G_CDS: 4.45 Total: -51.41 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -0.56 Total: -77.00 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.78 Total: -11.03 kcal Atomic # 14 Polarization: 58.87 SS G_CDS: 1.76 Total: 60.62 kcal Total: -64.61 5.83 -58.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244252078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.156 kcal (2) G-P(sol) polarization free energy of solvation -64.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds