Wall clock time and date at job start Tue Mar 31 2020 06:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35904 * 116.99939 * 2 1 4 4 C 1.38922 * 119.98218 * 0.02562 * 3 2 1 5 5 C 1.38284 * 120.24786 * 180.02562 * 4 3 2 6 6 C 1.37972 * 120.20901 * 0.27239 * 5 4 3 7 7 C 1.39671 * 119.95570 * 359.45476 * 6 5 4 8 8 C 1.47860 * 120.12396 * 180.25332 * 7 6 5 9 9 C 1.39300 * 120.78023 * 65.01317 * 8 7 6 10 10 N 1.31680 * 120.65912 * 179.68774 * 9 8 7 11 11 C 1.32206 * 122.50276 * 0.63158 * 10 9 8 12 12 C 1.36494 * 121.50490 * 359.65856 * 11 10 9 13 13 C 1.41115 * 119.10727 * 0.02562 * 12 11 10 14 14 C 1.40931 * 121.10836 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00326 * 206.11805 * 14 13 12 16 16 C 1.40180 * 119.99799 * 26.11879 * 14 13 12 17 17 N 1.30690 * 120.00132 * 13.91404 * 16 14 13 18 18 Si 1.86803 * 120.00055 * 193.91143 * 16 14 13 19 19 H 1.48500 * 109.46850 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47088 * 119.99835 * 18 16 14 21 21 H 1.48494 * 109.47247 * 240.00049 * 18 16 14 22 22 C 1.38399 * 119.98009 * 180.02562 * 3 2 1 23 23 C 1.50698 * 120.10220 * 0.02562 * 22 3 2 24 24 C 1.53004 * 117.49952 * 312.74502 * 23 22 3 25 25 C 1.53006 * 117.49813 * 244.08503 * 23 22 3 26 26 H 1.08992 * 109.47202 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46790 * 299.99746 * 1 2 3 28 28 H 1.08999 * 109.46946 * 59.99687 * 1 2 3 29 29 H 1.08007 * 119.87284 * 0.03901 * 4 3 2 30 30 H 1.08001 * 119.89152 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.01723 * 179.72104 * 6 5 4 32 32 H 1.07998 * 119.67042 * 359.97438 * 9 8 7 33 33 H 1.08001 * 119.24486 * 179.67698 * 11 10 9 34 34 H 1.08000 * 120.44250 * 180.02562 * 12 11 10 35 35 H 0.96998 * 119.99850 * 179.97438 * 17 16 14 36 36 H 1.08994 * 115.55152 * 98.41880 * 23 22 3 37 37 H 1.08994 * 117.49738 * 359.97438 * 24 23 22 38 38 H 1.08996 * 117.49837 * 145.02166 * 24 23 22 39 39 H 1.08994 * 117.49735 * 214.98111 * 25 23 22 40 40 H 1.08998 * 117.49610 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2891 2.3758 0.0005 5 6 1.9111 3.6108 0.0000 6 6 3.2883 3.6944 -0.0067 7 6 4.0578 2.5289 -0.0015 8 6 5.5340 2.6142 -0.0031 9 6 6.2173 3.1654 1.0785 10 7 7.5322 3.2346 1.0772 11 6 8.2653 2.8050 0.0644 12 6 7.6943 2.2533 -1.0459 13 6 6.2892 2.1410 -1.1113 14 6 5.6554 1.5779 -2.2371 15 1 4.6421 1.8590 -2.4833 16 6 6.3402 0.6529 -3.0374 17 7 7.4458 0.1067 -2.6046 18 14 5.6725 0.2008 -4.7224 19 1 4.4165 0.9518 -4.9748 20 1 6.6749 0.5482 -5.7615 21 1 5.3950 -1.2572 -4.7700 22 6 3.4282 1.2829 -0.0005 23 6 4.2508 0.0202 -0.0017 24 6 3.8650 -1.0752 0.9944 25 6 5.1339 -0.2487 1.2185 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 0.2106 2.3165 0.0016 30 1 1.3170 4.5127 0.0000 31 1 3.7709 4.6606 -0.0117 32 1 5.6633 3.5355 1.9285 33 1 9.3405 2.8922 0.1169 34 1 8.3097 1.9075 -1.8633 35 1 7.9195 -0.5336 -3.1582 36 1 4.6276 -0.2945 -0.9748 37 1 3.0165 -0.8824 1.6509 38 1 3.9884 -2.1105 0.6767 39 1 6.0914 -0.7407 1.0480 40 1 5.1202 0.4878 2.0218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244252177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:10 Heat of formation + Delta-G solvation = 36.188082 kcal Electronic energy + Delta-G solvation = -24026.570641 eV Core-core repulsion = 20771.836782 eV Total energy + Delta-G solvation = -3254.733859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.92220 -38.39518 -36.87825 -35.83301 -34.17396 -31.78451 -30.16301 -29.84911 -28.14698 -26.96030 -25.99620 -23.09534 -22.48872 -21.53516 -21.33071 -20.35318 -19.45997 -17.62077 -17.22185 -15.76112 -15.64523 -15.49872 -15.26383 -14.54581 -14.45336 -14.29407 -14.17368 -13.54440 -13.18534 -12.74692 -12.55205 -12.21852 -12.04910 -11.93528 -11.58847 -11.45215 -11.30182 -11.18756 -10.98559 -10.82996 -10.60491 -10.40969 -10.18428 -9.83159 -9.67023 -9.49818 -9.24169 -8.30740 -8.00076 -7.78328 -7.58848 -7.42592 -6.88406 -4.61832 1.84751 2.03699 2.69708 2.81554 3.00069 3.05787 3.22312 3.68376 3.81800 4.34594 4.60769 4.66673 5.14444 5.28011 5.29692 5.36904 5.54519 5.57692 5.62258 5.75057 5.77304 5.86997 5.88662 6.05780 6.21293 6.26003 6.32421 6.41021 6.60158 6.69215 6.79698 6.87127 6.88182 6.89924 6.99318 7.09126 7.16565 7.25679 7.38667 7.42667 7.49955 7.85093 7.90170 8.07511 8.42384 8.67700 8.72472 9.61610 9.99176 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012070 B = 0.007786 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.253970 B = 3595.415845 C = 4528.220743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.308 6.308 3 C 0.124 3.876 4 C -0.229 4.229 5 C -0.091 4.091 6 C -0.157 4.157 7 C 0.064 3.936 8 C -0.222 4.222 9 C 0.127 3.873 10 N -0.577 5.577 11 C 0.080 3.920 12 C -0.206 4.206 13 C 0.153 3.847 14 C -0.434 4.434 15 H 0.082 0.918 16 C 0.079 3.921 17 N -0.779 5.779 18 Si 0.903 3.097 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.272 1.272 22 C -0.065 4.065 23 C -0.075 4.075 24 C -0.180 4.180 25 C -0.157 4.157 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.283 0.717 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.675 -0.814 1.596 9.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.079 3.921 4 C -0.248 4.248 5 C -0.109 4.109 6 C -0.176 4.176 7 C 0.063 3.937 8 C -0.227 4.227 9 C -0.030 4.030 10 N -0.291 5.291 11 C -0.068 4.068 12 C -0.229 4.229 13 C 0.145 3.855 14 C -0.464 4.464 15 H 0.100 0.900 16 C -0.141 4.141 17 N -0.403 5.403 18 Si 0.727 3.273 19 H -0.181 1.181 20 H -0.195 1.195 21 H -0.197 1.197 22 C -0.066 4.066 23 C -0.093 4.093 24 C -0.217 4.217 25 C -0.194 4.194 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.094 0.906 36 H 0.141 0.859 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.919 -0.829 2.251 9.236 hybrid contribution -0.965 -0.494 -1.637 1.964 sum -9.885 -1.324 0.614 9.992 Atomic orbital electron populations 1.22938 0.79974 1.03043 1.00759 1.86166 1.19879 1.27056 1.89008 1.18744 0.91599 0.83785 0.97975 1.21013 0.98972 0.92483 1.12333 1.20673 0.94532 0.96309 0.99429 1.21217 0.93123 0.98081 1.05156 1.18357 0.92853 0.90346 0.92177 1.19358 0.90578 1.15015 0.97798 1.21988 0.90231 0.95378 0.95449 1.67307 1.06832 1.25084 1.29857 1.21691 0.97936 0.96477 0.90702 1.21912 0.95971 1.05082 0.99896 1.17622 0.91144 0.86612 0.90153 1.19526 1.00423 1.19683 1.06800 0.89993 1.25963 0.94076 0.94758 0.99338 1.69743 1.14078 1.20179 1.36338 0.86315 0.80370 0.79123 0.81514 1.18135 1.19540 1.19678 1.18711 0.88858 0.94393 1.04654 1.20601 1.00100 0.92551 0.96018 1.22886 0.98772 0.96033 1.04014 1.22732 0.94334 1.02329 1.00031 0.88967 0.93298 0.93207 0.86554 0.86797 0.86462 0.86475 0.86660 0.85692 0.90569 0.85934 0.89623 0.89911 0.89430 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -5.07 8.41 -19.44 -0.16 -5.23 16 3 C 0.12 2.24 6.52 -39.27 -0.26 1.99 16 4 C -0.23 -3.67 9.04 -39.31 -0.36 -4.03 16 5 C -0.09 -1.47 10.03 -39.66 -0.40 -1.86 16 6 C -0.16 -2.91 9.75 -39.14 -0.38 -3.29 16 7 C 0.06 1.33 4.48 -104.92 -0.47 0.86 16 8 C -0.22 -5.08 4.03 -104.04 -0.42 -5.50 16 9 C 0.13 2.89 10.92 -17.22 -0.19 2.70 16 10 N -0.58 -13.69 10.32 -13.36 -0.14 -13.83 16 11 C 0.08 1.88 11.09 -18.02 -0.20 1.68 16 12 C -0.21 -5.08 8.72 -39.12 -0.34 -5.43 16 13 C 0.15 3.76 5.18 -106.26 -0.55 3.21 16 14 C -0.43 -10.59 6.18 -37.83 -0.23 -10.82 16 15 H 0.08 2.05 7.26 -52.49 -0.38 1.66 16 16 C 0.08 1.84 5.19 -17.31 -0.09 1.75 16 17 N -0.78 -18.50 10.90 55.56 0.61 -17.89 16 18 Si 0.90 17.92 29.58 -169.99 -5.03 12.89 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 C -0.07 -1.33 4.97 -104.05 -0.52 -1.85 16 23 C -0.08 -1.56 3.99 -91.77 -0.37 -1.92 16 24 C -0.18 -3.24 9.15 -26.69 -0.24 -3.49 16 25 C -0.16 -3.15 9.39 -26.69 -0.25 -3.40 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 28 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 29 H 0.12 1.52 6.28 -52.48 -0.33 1.19 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 33 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 34 H 0.13 3.14 6.25 -52.49 -0.33 2.81 16 35 H 0.28 6.15 8.29 -40.82 -0.34 5.82 16 36 H 0.12 2.85 6.67 -51.93 -0.35 2.51 16 37 H 0.09 1.49 7.45 -51.93 -0.39 1.10 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 40 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 331.28 15.07 4.99 4.99 Total: -1.00 -26.62 331.28 -9.09 -35.70 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.08 Total: 11.46 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -4.27 Total: -28.09 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.47 Total: -31.72 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.16 Total: -5.23 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.62 -9.09 -35.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244252177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.889 kcal (2) G-P(sol) polarization free energy of solvation -26.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds