Wall clock time and date at job start Tue Mar 31 2020 06:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35904 * 116.99939 * 2 1 4 4 C 1.38922 * 119.98218 * 0.02562 * 3 2 1 5 5 C 1.38284 * 120.24786 * 180.02562 * 4 3 2 6 6 C 1.37972 * 120.20901 * 0.27239 * 5 4 3 7 7 C 1.39671 * 119.95570 * 359.45476 * 6 5 4 8 8 C 1.47860 * 120.12396 * 180.25332 * 7 6 5 9 9 C 1.39300 * 120.78023 * 65.01317 * 8 7 6 10 10 N 1.31680 * 120.65912 * 179.68774 * 9 8 7 11 11 C 1.32206 * 122.50276 * 0.63158 * 10 9 8 12 12 C 1.36494 * 121.50490 * 359.65856 * 11 10 9 13 13 C 1.41115 * 119.10727 * 0.02562 * 12 11 10 14 14 C 1.40931 * 121.10836 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00326 * 206.11805 * 14 13 12 16 16 C 1.40180 * 119.99799 * 26.11879 * 14 13 12 17 17 N 1.30690 * 120.00132 * 13.91404 * 16 14 13 18 18 Si 1.86803 * 120.00055 * 193.91143 * 16 14 13 19 19 H 1.48500 * 109.46850 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47088 * 119.99835 * 18 16 14 21 21 H 1.48494 * 109.47247 * 240.00049 * 18 16 14 22 22 C 1.38399 * 119.98009 * 180.02562 * 3 2 1 23 23 C 1.50698 * 120.10220 * 0.02562 * 22 3 2 24 24 C 1.53004 * 117.49952 * 312.74502 * 23 22 3 25 25 C 1.53006 * 117.49813 * 244.08503 * 23 22 3 26 26 H 1.08992 * 109.47202 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46790 * 299.99746 * 1 2 3 28 28 H 1.08999 * 109.46946 * 59.99687 * 1 2 3 29 29 H 1.08007 * 119.87284 * 0.03901 * 4 3 2 30 30 H 1.08001 * 119.89152 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.01723 * 179.72104 * 6 5 4 32 32 H 1.07998 * 119.67042 * 359.97438 * 9 8 7 33 33 H 1.08001 * 119.24486 * 179.67698 * 11 10 9 34 34 H 1.08000 * 120.44250 * 180.02562 * 12 11 10 35 35 H 0.96998 * 119.99850 * 179.97438 * 17 16 14 36 36 H 1.08994 * 115.55152 * 98.41880 * 23 22 3 37 37 H 1.08994 * 117.49738 * 359.97438 * 24 23 22 38 38 H 1.08996 * 117.49837 * 145.02166 * 24 23 22 39 39 H 1.08994 * 117.49735 * 214.98111 * 25 23 22 40 40 H 1.08998 * 117.49610 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2891 2.3758 0.0005 5 6 1.9111 3.6108 0.0000 6 6 3.2883 3.6944 -0.0067 7 6 4.0578 2.5289 -0.0015 8 6 5.5340 2.6142 -0.0031 9 6 6.2173 3.1654 1.0785 10 7 7.5322 3.2346 1.0772 11 6 8.2653 2.8050 0.0644 12 6 7.6943 2.2533 -1.0459 13 6 6.2892 2.1410 -1.1113 14 6 5.6554 1.5779 -2.2371 15 1 4.6421 1.8590 -2.4833 16 6 6.3402 0.6529 -3.0374 17 7 7.4458 0.1067 -2.6046 18 14 5.6725 0.2008 -4.7224 19 1 4.4165 0.9518 -4.9748 20 1 6.6749 0.5482 -5.7615 21 1 5.3950 -1.2572 -4.7700 22 6 3.4282 1.2829 -0.0005 23 6 4.2508 0.0202 -0.0017 24 6 3.8650 -1.0752 0.9944 25 6 5.1339 -0.2487 1.2185 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 0.2106 2.3165 0.0016 30 1 1.3170 4.5127 0.0000 31 1 3.7709 4.6606 -0.0117 32 1 5.6633 3.5355 1.9285 33 1 9.3405 2.8922 0.1169 34 1 8.3097 1.9075 -1.8633 35 1 7.9195 -0.5336 -3.1582 36 1 4.6276 -0.2945 -0.9748 37 1 3.0165 -0.8824 1.6509 38 1 3.9884 -2.1105 0.6767 39 1 6.0914 -0.7407 1.0480 40 1 5.1202 0.4878 2.0218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244252177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:09 Heat of formation + Delta-G solvation = 24.332173 kcal Electronic energy + Delta-G solvation = -24027.084752 eV Core-core repulsion = 20771.836782 eV Total energy + Delta-G solvation = -3255.247970 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.31064 -40.04559 -38.29376 -37.30539 -35.97891 -33.40003 -31.96024 -31.18279 -29.73189 -27.99440 -27.78329 -24.61360 -24.01823 -23.24086 -23.00500 -21.82509 -20.96718 -19.41430 -18.56809 -17.43021 -17.07232 -16.87759 -16.43844 -16.26198 -16.05048 -15.85136 -15.74078 -14.98606 -14.51544 -14.42479 -14.21499 -13.92556 -13.39689 -13.36954 -13.14443 -13.03419 -12.77246 -12.63926 -12.48840 -12.34606 -12.03320 -11.81719 -11.77965 -11.50004 -11.22391 -11.18001 -10.81008 -9.96775 -9.84811 -9.54969 -9.12837 -8.90976 -8.64654 -6.46905 0.39225 0.66153 0.99969 1.03937 1.35527 1.47830 1.52614 2.15673 2.54836 2.79286 2.94762 3.12283 3.75862 3.83880 4.00669 4.09928 4.16181 4.24591 4.31218 4.39734 4.48816 4.50082 4.55550 4.65278 4.78517 4.80929 4.81887 4.90841 5.02104 5.02740 5.08207 5.26287 5.30962 5.32067 5.39784 5.48131 5.57936 5.60848 5.65763 5.89404 5.93010 6.11684 6.24884 6.57393 6.66545 6.84220 6.88841 7.76919 8.24507 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012070 B = 0.007786 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.253970 B = 3595.415845 C = 4528.220743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.326 6.326 3 C 0.121 3.879 4 C -0.220 4.220 5 C -0.081 4.081 6 C -0.170 4.170 7 C 0.034 3.966 8 C -0.213 4.213 9 C 0.116 3.884 10 N -0.588 5.588 11 C 0.075 3.925 12 C -0.228 4.228 13 C 0.130 3.870 14 C -0.446 4.446 15 H 0.070 0.930 16 C 0.047 3.953 17 N -0.803 5.803 18 Si 0.964 3.036 19 H -0.262 1.262 20 H -0.261 1.261 21 H -0.266 1.266 22 C -0.089 4.089 23 C -0.084 4.084 24 C -0.148 4.148 25 C -0.165 4.165 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.291 0.709 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 -0.810 1.533 12.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.075 3.925 4 C -0.238 4.238 5 C -0.098 4.098 6 C -0.189 4.189 7 C 0.034 3.966 8 C -0.218 4.218 9 C -0.041 4.041 10 N -0.302 5.302 11 C -0.074 4.074 12 C -0.250 4.250 13 C 0.122 3.878 14 C -0.476 4.476 15 H 0.088 0.912 16 C -0.171 4.171 17 N -0.428 5.428 18 Si 0.785 3.215 19 H -0.185 1.185 20 H -0.186 1.186 21 H -0.191 1.191 22 C -0.090 4.090 23 C -0.102 4.102 24 C -0.185 4.185 25 C -0.202 4.202 26 H 0.133 0.867 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.138 0.862 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.938 -0.823 2.205 12.168 hybrid contribution -0.153 -0.515 -1.562 1.652 sum -12.091 -1.338 0.643 12.182 Atomic orbital electron populations 1.23302 0.77208 1.05142 1.02029 1.86132 1.22709 1.26401 1.88710 1.18824 0.91033 0.85255 0.97343 1.21433 1.00748 0.91497 1.10151 1.21073 0.93601 0.97990 0.97182 1.21341 0.94455 0.97317 1.05751 1.18390 0.91838 0.91778 0.94641 1.19571 0.92166 1.13197 0.96875 1.22326 0.90145 0.95491 0.96133 1.67349 1.07451 1.25536 1.29891 1.21973 0.99011 0.96052 0.90337 1.21899 0.96249 1.06561 1.00292 1.17920 0.91492 0.87276 0.91067 1.19477 1.00004 1.20529 1.07586 0.91225 1.26608 0.94185 0.94248 1.02092 1.69778 1.14950 1.20566 1.37551 0.85406 0.79609 0.78868 0.77577 1.18542 1.18589 1.19056 1.18712 0.90223 0.93632 1.06391 1.20407 1.00905 0.94272 0.94594 1.22891 0.97483 0.95910 1.02173 1.22577 0.94486 1.03116 1.00035 0.86712 0.91600 0.92162 0.82858 0.82975 0.86177 0.84585 0.84642 0.86816 0.89834 0.89246 0.88334 0.88601 0.91241 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.33 -9.88 8.41 -92.47 -0.78 -10.66 16 3 C 0.12 4.13 6.52 22.47 0.15 4.27 16 4 C -0.22 -6.21 9.04 22.44 0.20 -6.01 16 5 C -0.08 -2.32 10.03 22.22 0.22 -2.10 16 6 C -0.17 -6.09 9.75 22.55 0.22 -5.87 16 7 C 0.03 1.45 4.48 -20.05 -0.09 1.36 16 8 C -0.21 -10.03 4.03 -19.49 -0.08 -10.10 16 9 C 0.12 5.34 10.92 84.97 0.93 6.27 16 10 N -0.59 -28.44 10.32 -196.19 -2.02 -30.47 16 11 C 0.07 3.62 11.09 84.23 0.93 4.55 16 12 C -0.23 -11.70 8.72 22.57 0.20 -11.50 16 13 C 0.13 6.69 5.18 -20.93 -0.11 6.58 16 14 C -0.45 -22.57 6.18 23.40 0.14 -22.42 16 15 H 0.07 3.61 7.26 -2.91 -0.02 3.59 16 16 C 0.05 2.24 5.19 85.33 0.44 2.68 16 17 N -0.80 -39.43 10.90 21.87 0.24 -39.19 16 18 Si 0.96 37.17 29.58 68.60 2.03 39.20 16 19 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 20 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 21 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 22 C -0.09 -3.60 4.97 -19.50 -0.10 -3.70 16 23 C -0.08 -3.55 3.99 -11.54 -0.05 -3.59 16 24 C -0.15 -5.24 9.15 30.62 0.28 -4.96 16 25 C -0.16 -6.81 9.39 30.62 0.29 -6.52 16 26 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.04 7.66 -2.38 -0.02 1.02 16 28 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 29 H 0.15 3.16 6.28 -2.91 -0.02 3.14 16 30 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16 32 H 0.14 5.62 8.06 -2.91 -0.02 5.60 16 33 H 0.14 5.79 8.06 -2.91 -0.02 5.77 16 34 H 0.11 6.00 6.25 -2.91 -0.02 5.98 16 35 H 0.29 12.94 8.29 -92.71 -0.77 12.17 16 36 H 0.09 4.36 6.67 -2.39 -0.02 4.35 16 37 H 0.10 3.25 7.45 -2.39 -0.02 3.23 16 38 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -59.46 331.28 5.22 -54.24 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: 1.05 Total: 36.51 kcal Atomic # 6 Polarization: -54.33 SS G_CDS: 4.70 Total: -49.63 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.79 Total: -69.66 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.78 Total: -10.66 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Total: -59.46 5.22 -54.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244252177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.571 kcal (2) G-P(sol) polarization free energy of solvation -59.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds