Wall clock time and date at job start Tue Mar 31 2020 06:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35908 * 116.99993 * 2 1 4 4 C 1.38835 * 119.99153 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.18735 * 179.97438 * 4 3 2 6 6 C 1.38068 * 120.18128 * 0.02562 * 5 4 3 7 7 C 1.39344 * 119.99021 * 0.02562 * 6 5 4 8 8 C 1.48391 * 120.09763 * 179.97438 * 7 6 5 9 9 C 1.40044 * 120.82224 * 129.99797 * 8 7 6 10 10 C 1.38505 * 119.42402 * 179.97438 * 9 8 7 11 11 N 1.31478 * 121.14388 * 0.02562 * 10 9 8 12 12 C 1.33641 * 121.79413 * 359.97438 * 11 10 9 13 13 C 1.41427 * 119.77809 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00193 * 185.50771 * 13 12 11 15 15 C 1.40037 * 120.00006 * 5.49928 * 13 12 11 16 16 N 1.30731 * 119.99916 * 5.50793 * 15 13 12 17 17 Si 1.86799 * 119.99865 * 185.50018 * 15 13 12 18 18 H 1.48505 * 109.47033 * 85.00343 * 17 15 13 19 19 H 1.48499 * 109.47384 * 204.99894 * 17 15 13 20 20 H 1.48499 * 109.47511 * 325.00336 * 17 15 13 21 21 C 1.39298 * 120.82220 * 309.71834 * 8 7 6 22 22 C 1.38499 * 120.00028 * 179.97438 * 3 2 1 23 23 C 1.50704 * 120.08441 * 0.02562 * 22 3 2 24 24 C 1.53003 * 117.49982 * 130.03047 * 23 22 3 25 25 C 1.52994 * 117.50257 * 61.36547 * 23 22 3 26 26 H 1.09000 * 109.47034 * 60.00011 * 1 2 3 27 27 H 1.08994 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46539 * 300.00079 * 1 2 3 29 29 H 1.07994 * 119.90771 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.91385 * 180.02562 * 5 4 3 31 31 H 1.08001 * 120.00801 * 179.72530 * 6 5 4 32 32 H 1.07998 * 120.28557 * 359.97438 * 9 8 7 33 33 H 1.07992 * 119.42873 * 180.02562 * 10 9 8 34 34 H 0.96997 * 120.00095 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.57937 * 0.02562 * 21 8 7 36 36 H 1.09005 * 115.54374 * 275.69450 * 23 22 3 37 37 H 1.08998 * 117.49714 * 359.97438 * 24 23 22 38 38 H 1.08993 * 117.49884 * 145.01584 * 24 23 22 39 39 H 1.08998 * 117.50136 * 214.97495 * 25 23 22 40 40 H 1.09000 * 117.49911 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2897 2.3752 -0.0005 5 6 1.9129 3.6088 0.0000 6 6 3.2912 3.6901 0.0005 7 6 4.0576 2.5264 0.0000 8 6 5.5391 2.6110 0.0000 9 6 6.2996 1.8798 0.9210 10 6 7.6808 1.9800 0.8947 11 7 8.2902 2.7502 0.0205 12 6 7.6113 3.4682 -0.8792 13 6 8.3104 4.2823 -1.8004 14 1 7.7652 4.9315 -2.4696 15 6 9.7096 4.2468 -1.8447 16 7 10.3652 3.3850 -1.1122 17 14 10.6393 5.4307 -2.9508 18 1 10.8365 6.7201 -2.2408 19 1 11.9611 4.8497 -3.2978 20 1 9.8595 5.6638 -4.1929 21 6 6.2081 3.4153 -0.9198 22 6 3.4291 1.2834 0.0005 23 6 4.2518 0.0207 0.0005 24 6 5.3692 -0.0944 -1.0382 25 6 4.0930 -0.9259 -1.1908 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 0.2114 2.3168 -0.0005 30 1 1.3203 4.5116 0.0000 31 1 3.7753 4.6555 -0.0035 32 1 5.8133 1.2432 1.6453 33 1 8.2673 1.4159 1.6046 34 1 11.3343 3.3602 -1.1432 35 1 5.6573 3.9914 -1.6487 36 1 4.4262 -0.4266 0.9791 37 1 5.5090 0.7429 -1.7219 38 1 6.2786 -0.6179 -0.7433 39 1 4.1635 -1.9961 -0.9962 40 1 3.3932 -0.6357 -1.9745 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244253135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:04 Heat of formation + Delta-G solvation = 46.226519 kcal Electronic energy + Delta-G solvation = -23107.040590 eV Core-core repulsion = 19852.742030 eV Total energy + Delta-G solvation = -3254.298560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.23652 -38.41558 -37.12551 -36.15693 -33.62403 -31.95162 -30.28479 -29.89622 -28.51650 -27.20521 -25.68176 -23.57045 -22.79399 -21.64410 -21.12186 -20.65080 -19.90515 -17.96685 -16.71867 -16.10413 -15.82758 -15.55512 -15.43036 -14.87458 -14.46888 -14.26162 -13.96792 -13.76249 -13.46292 -12.99359 -12.56157 -12.40481 -12.08011 -12.01093 -11.72786 -11.42142 -11.23047 -11.05960 -11.04455 -10.95645 -10.71996 -10.58755 -10.40183 -10.04784 -9.93043 -9.63735 -9.30442 -8.68448 -7.94374 -7.69744 -7.58365 -7.53259 -6.41484 -4.49174 1.45674 1.70342 2.78669 2.96184 3.09920 3.12496 3.21189 3.41069 3.96090 4.05625 4.31422 4.76951 4.87173 4.97878 5.08916 5.11305 5.28228 5.36865 5.42751 5.45384 5.52702 5.74851 5.79665 5.84210 5.97329 6.05250 6.10568 6.25710 6.37319 6.52859 6.53614 6.57280 6.67074 6.72940 6.74646 6.83162 6.97664 7.00541 7.16546 7.35265 7.53149 7.60496 7.74388 8.01908 8.24864 8.67683 8.93481 10.13142 10.33698 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.024379 B = 0.004113 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.236674 B = 6805.471783 C = 7309.128453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.308 6.308 3 C 0.129 3.871 4 C -0.222 4.222 5 C -0.087 4.087 6 C -0.145 4.145 7 C 0.024 3.976 8 C 0.006 3.994 9 C -0.283 4.283 10 C 0.121 3.879 11 N -0.483 5.483 12 C 0.259 3.741 13 C -0.437 4.437 14 H 0.082 0.918 15 C 0.072 3.928 16 N -0.719 5.719 17 Si 0.905 3.095 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.263 1.263 21 C -0.254 4.254 22 C -0.079 4.079 23 C -0.094 4.094 24 C -0.148 4.148 25 C -0.174 4.174 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.273 0.727 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.157 -4.221 1.233 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.084 3.916 4 C -0.240 4.240 5 C -0.105 4.105 6 C -0.164 4.164 7 C 0.024 3.976 8 C 0.000 4.000 9 C -0.307 4.307 10 C -0.044 4.044 11 N -0.196 5.196 12 C 0.134 3.866 13 C -0.468 4.468 14 H 0.100 0.900 15 C -0.153 4.153 16 N -0.340 5.340 17 Si 0.729 3.271 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.277 4.277 22 C -0.079 4.079 23 C -0.112 4.112 24 C -0.185 4.185 25 C -0.211 4.211 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.112 0.888 33 H 0.135 0.865 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.931 -4.428 1.245 13.724 hybrid contribution -0.907 0.651 -0.378 1.179 sum -13.838 -3.776 0.867 14.370 Atomic orbital electron populations 1.22985 0.79413 1.03375 1.00979 1.86128 1.20336 1.26847 1.88859 1.18690 0.91410 0.84005 0.97490 1.21094 0.99374 0.92415 1.11159 1.20789 0.94480 0.96656 0.98541 1.21194 0.93225 0.98278 1.03658 1.18787 0.93476 0.91038 0.94301 1.18406 0.88931 0.96642 0.96040 1.21245 0.94965 1.08990 1.05458 1.22399 0.90884 0.95376 0.95696 1.68659 1.37711 1.08585 1.04602 1.18478 0.87758 0.89999 0.90383 1.19575 0.91215 1.20195 1.15829 0.89988 1.26016 0.98337 0.95422 0.95500 1.70082 1.08392 1.26774 1.28761 0.86388 0.78970 0.80872 0.80848 1.19338 1.20213 1.18661 1.21778 0.95708 1.06604 1.03573 1.18557 0.89381 0.93967 1.06032 1.20480 1.01185 0.94687 0.94837 1.22932 0.92078 1.01986 1.01527 1.22936 1.01247 0.96684 1.00262 0.93034 0.88673 0.93040 0.86038 0.86151 0.85659 0.88753 0.86545 0.91602 0.88344 0.87657 0.88511 0.88932 0.89445 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.29 9.50 -19.45 -0.18 -4.48 16 3 C 0.13 2.01 6.61 -39.26 -0.26 1.75 16 4 C -0.22 -3.06 9.03 -39.37 -0.36 -3.42 16 5 C -0.09 -1.23 10.03 -39.65 -0.40 -1.63 16 6 C -0.15 -2.47 9.55 -39.23 -0.37 -2.85 16 7 C 0.02 0.46 5.47 -104.92 -0.57 -0.11 16 8 C 0.01 0.13 3.53 -104.65 -0.37 -0.24 16 9 C -0.28 -6.17 7.49 -38.81 -0.29 -6.46 16 10 C 0.12 2.88 11.17 -17.60 -0.20 2.68 16 11 N -0.48 -13.07 7.91 -11.21 -0.09 -13.16 16 12 C 0.26 6.94 6.53 -85.02 -0.56 6.39 16 13 C -0.44 -11.61 9.14 -37.69 -0.34 -11.95 16 14 H 0.08 2.05 7.85 -52.48 -0.41 1.63 16 15 C 0.07 1.84 5.48 -17.35 -0.10 1.74 16 16 N -0.72 -19.08 11.52 55.55 0.64 -18.44 16 17 Si 0.91 18.59 29.56 -169.99 -5.03 13.57 16 18 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 21 C -0.25 -6.10 9.36 -38.34 -0.36 -6.45 16 22 C -0.08 -1.39 5.42 -104.14 -0.56 -1.95 16 23 C -0.09 -1.59 3.75 -91.77 -0.34 -1.94 16 24 C -0.15 -2.65 7.85 -26.69 -0.21 -2.86 16 25 C -0.17 -2.68 9.71 -26.69 -0.26 -2.94 16 26 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 29 H 0.12 1.32 6.28 -52.49 -0.33 0.99 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.13 2.08 8.05 -52.49 -0.42 1.66 16 32 H 0.09 1.89 7.17 -52.49 -0.38 1.52 16 33 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 34 H 0.27 6.58 8.29 -40.82 -0.34 6.24 16 35 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.11 1.73 7.94 -51.93 -0.41 1.32 16 37 H 0.10 1.98 7.26 -51.93 -0.38 1.60 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -29.18 334.64 -9.39 -38.58 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.22 Total: 7.87 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -4.56 Total: -28.98 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.55 Total: -31.60 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.18 Total: -4.48 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.18 -9.39 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244253135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.802 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds