Wall clock time and date at job start Tue Mar 31 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35908 * 116.99993 * 2 1 4 4 C 1.38835 * 119.99153 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.18735 * 179.97438 * 4 3 2 6 6 C 1.38068 * 120.18128 * 0.02562 * 5 4 3 7 7 C 1.39344 * 119.99021 * 0.02562 * 6 5 4 8 8 C 1.48391 * 120.09763 * 179.97438 * 7 6 5 9 9 C 1.40044 * 120.82224 * 129.99797 * 8 7 6 10 10 C 1.38505 * 119.42402 * 179.97438 * 9 8 7 11 11 N 1.31478 * 121.14388 * 0.02562 * 10 9 8 12 12 C 1.33641 * 121.79413 * 359.97438 * 11 10 9 13 13 C 1.41427 * 119.77809 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00193 * 185.50771 * 13 12 11 15 15 C 1.40037 * 120.00006 * 5.49928 * 13 12 11 16 16 N 1.30731 * 119.99916 * 5.50793 * 15 13 12 17 17 Si 1.86799 * 119.99865 * 185.50018 * 15 13 12 18 18 H 1.48505 * 109.47033 * 85.00343 * 17 15 13 19 19 H 1.48499 * 109.47384 * 204.99894 * 17 15 13 20 20 H 1.48499 * 109.47511 * 325.00336 * 17 15 13 21 21 C 1.39298 * 120.82220 * 309.71834 * 8 7 6 22 22 C 1.38499 * 120.00028 * 179.97438 * 3 2 1 23 23 C 1.50704 * 120.08441 * 0.02562 * 22 3 2 24 24 C 1.53003 * 117.49982 * 130.03047 * 23 22 3 25 25 C 1.52994 * 117.50257 * 61.36547 * 23 22 3 26 26 H 1.09000 * 109.47034 * 60.00011 * 1 2 3 27 27 H 1.08994 * 109.46925 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46539 * 300.00079 * 1 2 3 29 29 H 1.07994 * 119.90771 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.91385 * 180.02562 * 5 4 3 31 31 H 1.08001 * 120.00801 * 179.72530 * 6 5 4 32 32 H 1.07998 * 120.28557 * 359.97438 * 9 8 7 33 33 H 1.07992 * 119.42873 * 180.02562 * 10 9 8 34 34 H 0.96997 * 120.00095 * 179.97438 * 16 15 13 35 35 H 1.08000 * 120.57937 * 0.02562 * 21 8 7 36 36 H 1.09005 * 115.54374 * 275.69450 * 23 22 3 37 37 H 1.08998 * 117.49714 * 359.97438 * 24 23 22 38 38 H 1.08993 * 117.49884 * 145.01584 * 24 23 22 39 39 H 1.08998 * 117.50136 * 214.97495 * 25 23 22 40 40 H 1.09000 * 117.49911 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2897 2.3752 -0.0005 5 6 1.9129 3.6088 0.0000 6 6 3.2912 3.6901 0.0005 7 6 4.0576 2.5264 0.0000 8 6 5.5391 2.6110 0.0000 9 6 6.2996 1.8798 0.9210 10 6 7.6808 1.9800 0.8947 11 7 8.2902 2.7502 0.0205 12 6 7.6113 3.4682 -0.8792 13 6 8.3104 4.2823 -1.8004 14 1 7.7652 4.9315 -2.4696 15 6 9.7096 4.2468 -1.8447 16 7 10.3652 3.3850 -1.1122 17 14 10.6393 5.4307 -2.9508 18 1 10.8365 6.7201 -2.2408 19 1 11.9611 4.8497 -3.2978 20 1 9.8595 5.6638 -4.1929 21 6 6.2081 3.4153 -0.9198 22 6 3.4291 1.2834 0.0005 23 6 4.2518 0.0207 0.0005 24 6 5.3692 -0.0944 -1.0382 25 6 4.0930 -0.9259 -1.1908 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 0.2114 2.3168 -0.0005 30 1 1.3203 4.5116 0.0000 31 1 3.7753 4.6555 -0.0035 32 1 5.8133 1.2432 1.6453 33 1 8.2673 1.4159 1.6046 34 1 11.3343 3.3602 -1.1432 35 1 5.6573 3.9914 -1.6487 36 1 4.4262 -0.4266 0.9791 37 1 5.5090 0.7429 -1.7219 38 1 6.2786 -0.6179 -0.7433 39 1 4.1635 -1.9961 -0.9962 40 1 3.3932 -0.6357 -1.9745 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244253135.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:03 Heat of formation + Delta-G solvation = 31.825375 kcal Electronic energy + Delta-G solvation = -23107.665071 eV Core-core repulsion = 19852.742030 eV Total energy + Delta-G solvation = -3254.923041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46819 -40.00540 -38.49816 -37.43316 -35.48523 -33.54533 -31.91122 -31.37079 -29.98027 -28.05756 -27.58564 -24.94924 -24.23206 -23.08092 -22.91915 -22.03932 -21.28372 -19.43459 -18.26834 -17.32429 -17.25003 -16.92083 -16.55878 -16.33416 -16.02745 -15.83578 -15.71429 -15.11614 -14.61481 -14.48330 -14.17115 -13.92463 -13.54349 -13.34283 -13.01163 -12.87869 -12.68685 -12.63394 -12.52551 -12.39533 -12.19060 -11.95426 -11.73488 -11.68045 -11.41005 -11.13435 -10.97318 -10.21846 -9.53296 -9.45948 -9.31911 -9.03774 -8.30070 -6.48049 0.13229 0.48204 0.94097 1.25824 1.40395 1.53360 1.55638 2.23757 2.43049 2.75874 2.89433 2.99090 3.68355 3.82189 3.94799 4.05330 4.06612 4.12686 4.24030 4.28133 4.41675 4.46946 4.48707 4.56401 4.66691 4.73148 4.79346 4.80170 4.87164 4.94980 5.00880 5.12602 5.20472 5.24284 5.27899 5.34509 5.42123 5.53813 5.60796 5.66218 5.81650 5.98034 6.16828 6.30976 6.52797 6.75768 6.98573 8.21891 8.47647 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.024379 B = 0.004113 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.236674 B = 6805.471783 C = 7309.128453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.322 6.322 3 C 0.129 3.871 4 C -0.209 4.209 5 C -0.077 4.077 6 C -0.161 4.161 7 C -0.009 4.009 8 C 0.021 3.979 9 C -0.271 4.271 10 C 0.105 3.895 11 N -0.519 5.519 12 C 0.232 3.768 13 C -0.477 4.477 14 H 0.084 0.916 15 C 0.028 3.972 16 N -0.760 5.760 17 Si 0.984 3.016 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.257 1.257 21 C -0.272 4.272 22 C -0.096 4.096 23 C -0.095 4.095 24 C -0.167 4.167 25 C -0.145 4.145 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.065 0.935 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.279 0.721 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.224 -4.601 1.283 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.235 6.235 3 C 0.084 3.916 4 C -0.227 4.227 5 C -0.095 4.095 6 C -0.179 4.179 7 C -0.009 4.009 8 C 0.015 3.985 9 C -0.293 4.293 10 C -0.059 4.059 11 N -0.232 5.232 12 C 0.106 3.894 13 C -0.508 4.508 14 H 0.102 0.898 15 C -0.193 4.193 16 N -0.382 5.382 17 Si 0.805 3.195 18 H -0.188 1.188 19 H -0.192 1.192 20 H -0.180 1.180 21 C -0.295 4.295 22 C -0.097 4.097 23 C -0.112 4.112 24 C -0.205 4.205 25 C -0.182 4.182 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.178 0.822 30 H 0.174 0.826 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.152 0.848 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.130 0.870 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.027 -4.826 1.309 16.789 hybrid contribution -0.231 0.639 -0.307 0.746 sum -16.259 -4.187 1.002 16.819 Atomic orbital electron populations 1.23356 0.76753 1.05461 1.02215 1.86111 1.23015 1.25958 1.88449 1.18732 0.90811 0.85419 0.96650 1.21532 1.01231 0.91359 1.08582 1.21150 0.93281 0.98482 0.96587 1.21273 0.94755 0.97308 1.04583 1.18696 0.91756 0.92784 0.97669 1.18647 0.91056 0.94530 0.94280 1.21430 0.94296 1.08381 1.05242 1.22792 0.92152 0.95286 0.95655 1.68601 1.38959 1.09925 1.05746 1.18852 0.89095 0.90527 0.90881 1.19915 0.92563 1.21420 1.16905 0.89756 1.26919 0.98681 0.96940 0.96775 1.70179 1.08919 1.28531 1.30553 0.85199 0.77516 0.78191 0.78633 1.18767 1.19184 1.18026 1.21822 0.95005 1.07992 1.04660 1.18617 0.90823 0.93282 1.06945 1.20541 1.00268 0.95249 0.95191 1.22707 0.93145 1.02119 1.02486 1.22960 0.98595 0.97562 0.99110 0.91784 0.86431 0.91631 0.82224 0.82613 0.86349 0.86755 0.84754 0.91070 0.88316 0.87159 0.91925 0.89556 0.86970 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -7.81 9.50 -92.51 -0.88 -8.69 16 3 C 0.13 3.67 6.61 22.48 0.15 3.81 16 4 C -0.21 -4.90 9.03 22.41 0.20 -4.70 16 5 C -0.08 -1.95 10.03 22.22 0.22 -1.73 16 6 C -0.16 -5.35 9.55 22.50 0.21 -5.14 16 7 C -0.01 -0.34 5.47 -20.06 -0.11 -0.45 16 8 C 0.02 0.96 3.53 -19.88 -0.07 0.89 16 9 C -0.27 -12.09 7.49 22.77 0.17 -11.92 16 10 C 0.10 5.16 11.17 84.81 0.95 6.11 16 11 N -0.52 -29.61 7.91 -189.37 -1.50 -31.11 16 12 C 0.23 13.18 6.53 40.20 0.26 13.45 16 13 C -0.48 -26.71 9.14 23.49 0.21 -26.49 16 14 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 15 C 0.03 1.48 5.48 85.29 0.47 1.95 16 16 N -0.76 -42.07 11.52 21.84 0.25 -41.81 16 17 Si 0.98 39.21 29.56 68.60 2.03 41.23 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 19 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 21 C -0.27 -13.85 9.36 23.07 0.22 -13.63 16 22 C -0.10 -3.28 5.42 -19.55 -0.11 -3.38 16 23 C -0.09 -3.13 3.75 -11.54 -0.04 -3.17 16 24 C -0.17 -6.12 7.85 30.62 0.24 -5.88 16 25 C -0.15 -4.27 9.71 30.62 0.30 -3.97 16 26 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 27 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 0.75 7.66 -2.38 -0.02 0.73 16 29 H 0.16 2.52 6.28 -2.91 -0.02 2.50 16 30 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.12 3.99 8.05 -2.91 -0.02 3.97 16 32 H 0.11 4.58 7.17 -2.91 -0.02 4.56 16 33 H 0.14 5.91 8.06 -2.91 -0.02 5.89 16 34 H 0.28 13.95 8.29 -92.71 -0.77 13.18 16 35 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 36 H 0.11 3.49 7.94 -2.38 -0.02 3.47 16 37 H 0.06 2.72 7.26 -2.39 -0.02 2.70 16 38 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -67.32 334.64 5.34 -61.99 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 1.05 Total: 31.31 kcal Atomic # 6 Polarization: -57.31 SS G_CDS: 4.39 Total: -52.92 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -1.25 Total: -72.92 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.88 Total: -8.69 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.23 kcal Total: -67.32 5.34 -61.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244253135.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.812 kcal (2) G-P(sol) polarization free energy of solvation -67.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds