Wall clock time and date at job start Tue Mar 31 2020 06:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35795 * 116.99764 * 2 1 4 4 C 1.38615 * 120.12952 * 0.23374 * 3 2 1 5 5 C 1.38149 * 120.07021 * 180.27623 * 4 3 2 6 6 C 1.38432 * 120.32083 * 359.74338 * 5 4 3 7 7 C 1.37955 * 120.25596 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.03662 * 180.02562 * 7 6 5 9 9 C 1.53002 * 117.50187 * 14.12377 * 8 7 6 10 10 C 1.53003 * 117.49686 * 305.46474 * 8 7 6 11 11 C 1.39397 * 119.92505 * 0.02562 * 7 6 5 12 12 C 1.48180 * 120.16102 * 179.97438 * 11 7 6 13 13 C 1.39977 * 119.61127 * 127.11974 * 12 11 7 14 14 C 1.38657 * 119.45687 * 180.02562 * 13 12 11 15 15 C 1.38321 * 118.70141 * 0.02562 * 14 13 12 16 16 C 1.40671 * 119.19523 * 359.97438 * 15 14 13 17 17 C 1.41364 * 119.76462 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00064 * 342.39208 * 17 16 15 19 19 C 1.40008 * 120.00249 * 162.38950 * 17 16 15 20 20 N 1.30746 * 120.00148 * 167.90151 * 19 17 16 21 21 Si 1.86803 * 120.00040 * 347.90073 * 19 17 16 22 22 H 1.48506 * 109.47050 * 87.40844 * 21 19 17 23 23 H 1.48499 * 109.47510 * 207.40717 * 21 19 17 24 24 H 1.48503 * 109.47229 * 327.41027 * 21 19 17 25 25 N 1.32257 * 119.61583 * 307.10850 * 12 11 7 26 26 H 1.09004 * 109.46736 * 60.00249 * 1 2 3 27 27 H 1.08994 * 109.46823 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47432 * 300.00360 * 1 2 3 29 29 H 1.08007 * 119.96774 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.84299 * 179.76099 * 5 4 3 31 31 H 1.08007 * 119.87548 * 180.02562 * 6 5 4 32 32 H 1.08996 * 115.54657 * 159.80368 * 8 7 6 33 33 H 1.08997 * 117.49583 * 0.02562 * 9 8 7 34 34 H 1.08994 * 117.49624 * 145.01916 * 9 8 7 35 35 H 1.08991 * 117.49936 * 214.98161 * 10 8 7 36 36 H 1.09008 * 117.49852 * 359.97438 * 10 8 7 37 37 H 1.07995 * 120.27093 * 0.03313 * 13 12 11 38 38 H 1.08001 * 120.65355 * 180.02562 * 14 13 12 39 39 H 1.08000 * 120.40355 * 179.97438 * 15 14 13 40 40 H 0.97004 * 120.00217 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2932 2.3742 0.0049 5 6 1.9215 3.6045 -0.0009 6 6 3.3036 3.6833 -0.0062 7 6 4.0655 2.5332 -0.0053 8 6 5.5696 2.6248 -0.0105 9 6 6.1960 3.9823 0.3145 10 6 6.2232 3.4504 -1.1205 11 6 3.4423 1.2863 0.0005 12 6 4.2555 0.0475 0.0010 13 6 4.0248 -0.9310 0.9750 14 6 4.7879 -2.0886 0.9727 15 6 5.7608 -2.2410 0.0014 16 6 5.9453 -1.2221 -0.9508 17 6 6.9358 -1.3655 -1.9492 18 1 7.7257 -2.0916 -1.8258 19 6 6.8927 -0.5665 -3.0980 20 7 7.9212 -0.5244 -3.9041 21 14 5.3656 0.4397 -3.4792 22 1 5.4590 1.7575 -2.8009 23 1 5.2611 0.6445 -4.9463 24 1 4.1627 -0.2829 -2.9933 25 7 5.1907 -0.1207 -0.9190 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2145 2.3194 0.0083 30 1 1.3317 4.5092 -0.0009 31 1 3.7874 4.6489 -0.0103 32 1 6.0960 1.7331 0.3299 33 1 5.5200 4.8091 0.5326 34 1 7.1346 3.9838 0.8686 35 1 7.1798 3.1021 -1.5100 36 1 5.5652 3.9269 -1.8473 37 1 3.2585 -0.7855 1.7220 38 1 4.6260 -2.8563 1.7149 39 1 6.3713 -3.1315 -0.0258 40 1 7.8915 0.0295 -4.6999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244253422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:32 Heat of formation + Delta-G solvation = 35.901201 kcal Electronic energy + Delta-G solvation = -23897.682117 eV Core-core repulsion = 20642.935817 eV Total energy + Delta-G solvation = -3254.746300 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18684 -38.39913 -37.87289 -35.72074 -33.68406 -32.10060 -31.04107 -29.61587 -29.07786 -27.14290 -25.67579 -23.51180 -23.01631 -22.02868 -21.35949 -20.49977 -19.79119 -17.66283 -17.34370 -16.15985 -16.08849 -15.55053 -15.29338 -14.85458 -14.60797 -14.39401 -14.13246 -13.69491 -13.23522 -12.82875 -12.74638 -12.49379 -12.38180 -12.09887 -11.60856 -11.45338 -11.37448 -11.14450 -11.02618 -10.84303 -10.70106 -10.62158 -10.17540 -10.08719 -10.00690 -9.91236 -9.19216 -8.60878 -8.28774 -7.98134 -7.74204 -7.44443 -6.84283 -4.60912 1.43924 1.66698 2.58746 2.71939 3.48315 3.50706 3.59837 3.68911 3.88814 4.40800 4.49915 4.60403 4.90817 4.93364 5.12047 5.18022 5.21943 5.28398 5.35109 5.49056 5.50574 5.54051 5.56969 5.70286 5.93475 5.96454 6.04490 6.12980 6.29236 6.35546 6.41635 6.47403 6.54308 6.60617 6.62777 6.73700 6.88677 6.98593 7.09005 7.22804 7.40172 7.56313 7.68013 7.89418 8.19877 8.59741 8.68020 9.59229 10.09663 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.007986 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.544503 B = 3505.312229 C = 4419.588125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.300 6.300 3 C 0.144 3.856 4 C -0.222 4.222 5 C -0.082 4.082 6 C -0.166 4.166 7 C 0.016 3.984 8 C -0.100 4.100 9 C -0.188 4.188 10 C -0.150 4.150 11 C -0.051 4.051 12 C 0.208 3.792 13 C -0.272 4.272 14 C -0.053 4.053 15 C -0.254 4.254 16 C 0.247 3.753 17 C -0.419 4.419 18 H 0.094 0.906 19 C 0.091 3.909 20 N -0.805 5.805 21 Si 0.971 3.029 22 H -0.249 1.249 23 H -0.332 1.332 24 H -0.269 1.269 25 N -0.543 5.543 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.834 7.663 6.634 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.212 6.212 3 C 0.097 3.903 4 C -0.240 4.240 5 C -0.100 4.100 6 C -0.184 4.184 7 C 0.015 3.985 8 C -0.119 4.119 9 C -0.225 4.225 10 C -0.187 4.187 11 C -0.053 4.053 12 C 0.067 3.933 13 C -0.296 4.296 14 C -0.077 4.077 15 C -0.277 4.277 16 C 0.123 3.877 17 C -0.450 4.450 18 H 0.112 0.888 19 C -0.131 4.131 20 N -0.429 5.429 21 Si 0.804 3.196 22 H -0.174 1.174 23 H -0.265 1.265 24 H -0.195 1.195 25 N -0.261 5.261 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.372 8.082 5.819 14.379 hybrid contribution -1.011 -0.297 0.333 1.105 sum -11.383 7.785 6.152 15.100 Atomic orbital electron populations 1.23022 0.79332 1.03637 1.00834 1.86231 1.20372 1.26422 1.88193 1.18941 0.91190 0.84323 0.95810 1.21027 0.99527 0.92219 1.11270 1.20801 0.94319 0.96629 0.98237 1.20816 0.93539 0.97909 1.06097 1.19008 0.93774 0.91031 0.94648 1.20942 0.90679 0.95708 1.04526 1.23131 1.02519 0.97011 0.99791 1.22894 1.02506 1.02332 0.90953 1.17903 0.89075 0.92846 1.05441 1.19022 0.91713 0.91062 0.91477 1.21036 1.06582 0.97370 1.04580 1.20888 0.94568 0.95824 0.96436 1.21705 1.03821 1.01025 1.01123 1.18540 0.90075 0.86800 0.92287 1.19412 1.08126 1.17352 1.00116 0.88808 1.26265 0.98319 0.94075 0.94442 1.69652 1.30071 1.31950 1.11235 0.85041 0.80815 0.81979 0.71776 1.17378 1.26518 1.19536 1.67100 1.10119 1.23810 1.25026 0.93017 0.88501 0.92964 0.85714 0.86144 0.85936 0.86190 0.88935 0.88825 0.88382 0.89118 0.88088 0.87951 0.87576 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.30 -5.31 9.08 -19.10 -0.17 -5.48 16 3 C 0.14 2.63 6.61 -38.83 -0.26 2.37 16 4 C -0.22 -3.27 9.03 -39.47 -0.36 -3.62 16 5 C -0.08 -1.13 10.03 -39.54 -0.40 -1.53 16 6 C -0.17 -2.56 9.18 -39.61 -0.36 -2.93 16 7 C 0.02 0.31 5.65 -104.29 -0.59 -0.28 16 8 C -0.10 -1.89 5.11 -91.77 -0.47 -2.36 16 9 C -0.19 -2.78 9.84 -26.69 -0.26 -3.04 16 10 C -0.15 -2.61 8.41 -26.69 -0.22 -2.83 16 11 C -0.05 -1.06 5.57 -104.77 -0.58 -1.65 16 12 C 0.21 4.86 5.14 -82.95 -0.43 4.43 16 13 C -0.27 -5.99 8.89 -38.78 -0.34 -6.33 16 14 C -0.05 -1.14 10.15 -39.40 -0.40 -1.54 16 15 C -0.25 -6.03 9.83 -38.63 -0.38 -6.41 16 16 C 0.25 6.49 6.12 -85.01 -0.52 5.96 16 17 C -0.42 -11.55 9.67 -37.73 -0.37 -11.92 16 18 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 19 C 0.09 2.48 5.51 -17.35 -0.10 2.38 16 20 N -0.81 -21.90 13.92 55.55 0.77 -21.13 16 21 Si 0.97 24.46 25.49 -169.99 -4.33 20.12 16 22 H -0.25 -5.98 5.32 56.52 0.30 -5.68 16 23 H -0.33 -8.28 7.11 56.52 0.40 -7.88 16 24 H -0.27 -7.34 6.73 56.52 0.38 -6.96 16 25 N -0.54 -13.80 3.88 -7.69 -0.03 -13.83 16 26 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 27 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 29 H 0.13 1.45 6.30 -52.48 -0.33 1.12 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.12 1.61 6.17 -52.48 -0.32 1.28 16 32 H 0.12 2.60 6.67 -51.93 -0.35 2.25 16 33 H 0.09 1.18 6.33 -51.93 -0.33 0.85 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.09 1.53 8.14 -51.92 -0.42 1.10 16 37 H 0.10 2.04 7.90 -52.49 -0.41 1.63 16 38 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.29 7.15 8.29 -40.82 -0.34 6.81 16 LS Contribution 327.89 15.07 4.94 4.94 Total: -1.00 -30.39 327.89 -9.04 -39.44 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.18 Total: 3.93 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -5.04 Total: -27.99 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.74 Total: -34.96 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.17 Total: -5.48 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -4.33 Total: 20.12 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.39 -9.04 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244253422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.337 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds