Wall clock time and date at job start Tue Mar 31 2020 06:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35795 * 116.99764 * 2 1 4 4 C 1.38615 * 120.12952 * 0.23374 * 3 2 1 5 5 C 1.38149 * 120.07021 * 180.27623 * 4 3 2 6 6 C 1.38432 * 120.32083 * 359.74338 * 5 4 3 7 7 C 1.37955 * 120.25596 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.03662 * 180.02562 * 7 6 5 9 9 C 1.53002 * 117.50187 * 14.12377 * 8 7 6 10 10 C 1.53003 * 117.49686 * 305.46474 * 8 7 6 11 11 C 1.39397 * 119.92505 * 0.02562 * 7 6 5 12 12 C 1.48180 * 120.16102 * 179.97438 * 11 7 6 13 13 C 1.39977 * 119.61127 * 127.11974 * 12 11 7 14 14 C 1.38657 * 119.45687 * 180.02562 * 13 12 11 15 15 C 1.38321 * 118.70141 * 0.02562 * 14 13 12 16 16 C 1.40671 * 119.19523 * 359.97438 * 15 14 13 17 17 C 1.41364 * 119.76462 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00064 * 342.39208 * 17 16 15 19 19 C 1.40008 * 120.00249 * 162.38950 * 17 16 15 20 20 N 1.30746 * 120.00148 * 167.90151 * 19 17 16 21 21 Si 1.86803 * 120.00040 * 347.90073 * 19 17 16 22 22 H 1.48506 * 109.47050 * 87.40844 * 21 19 17 23 23 H 1.48499 * 109.47510 * 207.40717 * 21 19 17 24 24 H 1.48503 * 109.47229 * 327.41027 * 21 19 17 25 25 N 1.32257 * 119.61583 * 307.10850 * 12 11 7 26 26 H 1.09004 * 109.46736 * 60.00249 * 1 2 3 27 27 H 1.08994 * 109.46823 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47432 * 300.00360 * 1 2 3 29 29 H 1.08007 * 119.96774 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.84299 * 179.76099 * 5 4 3 31 31 H 1.08007 * 119.87548 * 180.02562 * 6 5 4 32 32 H 1.08996 * 115.54657 * 159.80368 * 8 7 6 33 33 H 1.08997 * 117.49583 * 0.02562 * 9 8 7 34 34 H 1.08994 * 117.49624 * 145.01916 * 9 8 7 35 35 H 1.08991 * 117.49936 * 214.98161 * 10 8 7 36 36 H 1.09008 * 117.49852 * 359.97438 * 10 8 7 37 37 H 1.07995 * 120.27093 * 0.03313 * 13 12 11 38 38 H 1.08001 * 120.65355 * 180.02562 * 14 13 12 39 39 H 1.08000 * 120.40355 * 179.97438 * 15 14 13 40 40 H 0.97004 * 120.00217 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2932 2.3742 0.0049 5 6 1.9215 3.6045 -0.0009 6 6 3.3036 3.6833 -0.0062 7 6 4.0655 2.5332 -0.0053 8 6 5.5696 2.6248 -0.0105 9 6 6.1960 3.9823 0.3145 10 6 6.2232 3.4504 -1.1205 11 6 3.4423 1.2863 0.0005 12 6 4.2555 0.0475 0.0010 13 6 4.0248 -0.9310 0.9750 14 6 4.7879 -2.0886 0.9727 15 6 5.7608 -2.2410 0.0014 16 6 5.9453 -1.2221 -0.9508 17 6 6.9358 -1.3655 -1.9492 18 1 7.7257 -2.0916 -1.8258 19 6 6.8927 -0.5665 -3.0980 20 7 7.9212 -0.5244 -3.9041 21 14 5.3656 0.4397 -3.4792 22 1 5.4590 1.7575 -2.8009 23 1 5.2611 0.6445 -4.9463 24 1 4.1627 -0.2829 -2.9933 25 7 5.1907 -0.1207 -0.9190 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2145 2.3194 0.0083 30 1 1.3317 4.5092 -0.0009 31 1 3.7874 4.6489 -0.0103 32 1 6.0960 1.7331 0.3299 33 1 5.5200 4.8091 0.5326 34 1 7.1346 3.9838 0.8686 35 1 7.1798 3.1021 -1.5100 36 1 5.5652 3.9269 -1.8473 37 1 3.2585 -0.7855 1.7220 38 1 4.6260 -2.8563 1.7149 39 1 6.3713 -3.1315 -0.0258 40 1 7.8915 0.0295 -4.6999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244253422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:31 Heat of formation + Delta-G solvation = 19.679636 kcal Electronic energy + Delta-G solvation = -23898.385537 eV Core-core repulsion = 20642.935817 eV Total energy + Delta-G solvation = -3255.449719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50308 -40.05991 -39.21187 -36.95914 -35.65501 -33.67098 -32.92486 -30.86312 -30.60827 -28.14523 -27.58491 -24.97054 -24.32668 -23.39910 -23.11954 -22.04635 -21.07079 -19.60057 -18.65598 -17.68070 -17.37709 -16.79360 -16.74423 -16.46502 -16.35638 -16.00651 -15.46408 -15.11497 -14.64045 -14.55363 -14.43435 -14.01174 -13.73427 -13.51440 -13.35542 -12.86664 -12.76916 -12.60904 -12.46186 -12.36642 -12.30512 -12.08106 -12.02681 -11.61923 -11.46414 -11.31896 -11.08125 -10.35393 -9.99008 -9.64526 -9.28600 -8.96698 -8.89597 -6.67506 0.09948 0.44650 0.76072 0.92828 1.43576 1.57763 1.61741 2.38905 2.41470 2.56794 2.68920 3.15694 3.56126 3.61452 3.71740 3.98791 4.03878 4.11889 4.19573 4.25147 4.27513 4.40559 4.41893 4.44312 4.57111 4.70349 4.72873 4.73956 4.76002 4.85493 4.90645 4.99056 5.11500 5.17099 5.22878 5.29669 5.36970 5.48917 5.54857 5.68757 5.73146 5.88530 5.99207 6.12602 6.51103 6.62109 6.66504 7.69097 8.09664 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.007986 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.544503 B = 3505.312229 C = 4419.588125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.133 3.867 4 C -0.216 4.216 5 C -0.064 4.064 6 C -0.168 4.168 7 C 0.002 3.998 8 C -0.128 4.128 9 C -0.147 4.147 10 C -0.163 4.163 11 C -0.104 4.104 12 C 0.197 3.803 13 C -0.264 4.264 14 C -0.046 4.046 15 C -0.273 4.273 16 C 0.231 3.769 17 C -0.456 4.456 18 H 0.072 0.928 19 C 0.067 3.933 20 N -0.837 5.837 21 Si 1.020 2.980 22 H -0.237 1.237 23 H -0.328 1.328 24 H -0.302 1.302 25 N -0.554 5.554 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.161 0.839 30 H 0.167 0.833 31 H 0.150 0.850 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.144 0.856 39 H 0.115 0.885 40 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.266 10.400 8.396 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.086 3.914 4 C -0.235 4.235 5 C -0.082 4.082 6 C -0.185 4.185 7 C 0.001 3.999 8 C -0.146 4.146 9 C -0.183 4.183 10 C -0.200 4.200 11 C -0.105 4.105 12 C 0.057 3.943 13 C -0.286 4.286 14 C -0.070 4.070 15 C -0.295 4.295 16 C 0.105 3.895 17 C -0.488 4.488 18 H 0.090 0.910 19 C -0.151 4.151 20 N -0.463 5.463 21 Si 0.853 3.147 22 H -0.161 1.161 23 H -0.261 1.261 24 H -0.230 1.230 25 N -0.272 5.272 26 H 0.082 0.918 27 H 0.129 0.871 28 H 0.094 0.906 29 H 0.178 0.822 30 H 0.184 0.816 31 H 0.168 0.832 32 H 0.096 0.904 33 H 0.143 0.857 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.140 0.860 38 H 0.162 0.838 39 H 0.133 0.867 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.809 10.829 7.593 19.121 hybrid contribution -0.168 -1.160 0.017 1.172 sum -13.977 9.669 7.610 18.622 Atomic orbital electron populations 1.23360 0.76495 1.05280 1.02522 1.86162 1.23435 1.26913 1.88248 1.19134 0.90597 0.85717 0.95930 1.21447 1.01158 0.91241 1.09618 1.21361 0.93928 0.97994 0.94916 1.21137 0.94395 0.97683 1.05335 1.19145 0.93620 0.91706 0.95405 1.20808 0.91319 0.96103 1.06371 1.23243 1.02815 0.95267 0.97007 1.22877 1.01679 1.03057 0.92418 1.18065 0.90342 0.92316 1.09787 1.19654 0.91093 0.92794 0.90740 1.21452 1.06132 0.96959 1.04030 1.21317 0.92940 0.96568 0.96209 1.21890 1.05036 1.01003 1.01588 1.18729 0.90262 0.87850 0.92637 1.19376 1.09158 1.18518 1.01791 0.91010 1.26649 0.99581 0.94587 0.94323 1.69652 1.30863 1.33590 1.12199 0.84339 0.77520 0.81373 0.71468 1.16124 1.26112 1.22977 1.67011 1.10705 1.23450 1.26031 0.91810 0.87141 0.90578 0.82194 0.81559 0.83245 0.90394 0.85709 0.87817 0.90360 0.88382 0.85969 0.83845 0.86722 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.47 16 2 O -0.33 -11.20 9.08 -91.25 -0.83 -12.03 16 3 C 0.13 4.55 6.61 22.76 0.15 4.70 16 4 C -0.22 -5.40 9.03 22.34 0.20 -5.20 16 5 C -0.06 -1.42 10.03 22.29 0.22 -1.20 16 6 C -0.17 -4.51 9.18 22.25 0.20 -4.31 16 7 C 0.00 0.07 5.65 -19.65 -0.11 -0.04 16 8 C -0.13 -4.79 5.11 -11.54 -0.06 -4.85 16 9 C -0.15 -4.02 9.84 30.62 0.30 -3.72 16 10 C -0.16 -5.62 8.41 30.62 0.26 -5.36 16 11 C -0.10 -4.23 5.57 -19.96 -0.11 -4.34 16 12 C 0.20 9.32 5.14 42.15 0.22 9.53 16 13 C -0.26 -11.42 8.89 22.79 0.20 -11.22 16 14 C -0.05 -1.96 10.15 22.39 0.23 -1.73 16 15 C -0.27 -13.32 9.83 22.88 0.22 -13.09 16 16 C 0.23 12.72 6.12 40.25 0.25 12.97 16 17 C -0.46 -26.90 9.67 23.47 0.23 -26.67 16 18 H 0.07 4.38 8.06 -2.91 -0.02 4.36 16 19 C 0.07 3.84 5.51 85.28 0.47 4.31 16 20 N -0.84 -47.86 13.92 21.83 0.30 -47.56 16 21 Si 1.02 52.83 25.49 68.60 1.75 54.58 16 22 H -0.24 -11.60 5.32 99.48 0.53 -11.07 16 23 H -0.33 -16.42 7.11 99.48 0.71 -15.71 16 24 H -0.30 -17.09 6.73 99.48 0.67 -16.42 16 25 N -0.55 -29.23 3.88 -178.25 -0.69 -29.92 16 26 H 0.06 1.12 7.67 -2.38 -0.02 1.11 16 27 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 1.16 7.65 -2.39 -0.02 1.14 16 29 H 0.16 2.78 6.30 -2.91 -0.02 2.76 16 30 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.15 3.12 6.17 -2.91 -0.02 3.10 16 32 H 0.08 3.55 6.67 -2.39 -0.02 3.53 16 33 H 0.12 2.60 6.33 -2.39 -0.02 2.59 16 34 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 37 H 0.12 4.73 7.90 -2.91 -0.02 4.71 16 38 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 39 H 0.11 5.24 8.06 -2.91 -0.02 5.22 16 40 H 0.29 15.30 8.29 -92.71 -0.77 14.53 16 Total: -1.00 -71.66 327.89 5.36 -66.31 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.84 Total: 17.36 kcal Atomic # 6 Polarization: -52.73 SS G_CDS: 3.99 Total: -48.74 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -0.39 Total: -77.48 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.83 Total: -12.03 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 1.75 Total: 54.58 kcal Total: -71.66 5.36 -66.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244253422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.986 kcal (2) G-P(sol) polarization free energy of solvation -71.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds