Wall clock time and date at job start Tue Mar 31 2020 06:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35814 * 116.99928 * 2 1 4 4 C 1.38612 * 120.12354 * 0.02562 * 3 2 1 5 5 C 1.38157 * 120.06932 * 180.02562 * 4 3 2 6 6 C 1.38418 * 120.30886 * 359.97366 * 5 4 3 7 7 C 1.37972 * 120.24624 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.03256 * 179.97438 * 7 6 5 9 9 C 1.53001 * 117.50138 * 14.38787 * 8 7 6 10 10 C 1.52996 * 117.50238 * 305.72640 * 8 7 6 11 11 C 1.39343 * 119.93377 * 0.02562 * 7 6 5 12 12 C 1.48263 * 120.15699 * 179.97438 * 11 7 6 13 13 C 1.38963 * 119.61952 * 132.22677 * 12 11 7 14 14 C 1.40816 * 118.76091 * 179.97438 * 13 12 11 15 15 C 1.41528 * 120.98560 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00189 * 332.11070 * 15 14 13 17 17 C 1.40046 * 120.00110 * 152.10338 * 15 14 13 18 18 N 1.30734 * 120.00129 * 164.85837 * 17 15 14 19 19 Si 1.86797 * 119.99946 * 344.86590 * 17 15 14 20 20 H 1.48506 * 109.47553 * 93.46066 * 19 17 15 21 21 H 1.48496 * 109.47142 * 213.46191 * 19 17 15 22 22 H 1.48503 * 109.47260 * 333.46411 * 19 17 15 23 23 C 1.41153 * 118.02975 * 359.97438 * 14 13 12 24 24 C 1.37721 * 119.08520 * 0.02562 * 23 14 13 25 25 N 1.31931 * 121.16145 * 359.74008 * 24 23 14 26 26 H 1.08995 * 109.47254 * 300.00008 * 1 2 3 27 27 H 1.08997 * 109.47040 * 60.00035 * 1 2 3 28 28 H 1.09001 * 109.46763 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.96579 * 359.97214 * 4 3 2 30 30 H 1.07995 * 119.84421 * 179.69899 * 5 4 3 31 31 H 1.07994 * 119.87458 * 180.02562 * 6 5 4 32 32 H 1.09005 * 115.54979 * 160.05631 * 8 7 6 33 33 H 1.09005 * 117.49406 * 359.97438 * 9 8 7 34 34 H 1.08996 * 117.50205 * 145.01679 * 9 8 7 35 35 H 1.08996 * 117.50092 * 214.98024 * 10 8 7 36 36 H 1.09004 * 117.49374 * 359.97438 * 10 8 7 37 37 H 1.08008 * 120.61935 * 359.95712 * 13 12 11 38 38 H 0.96996 * 120.00169 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.45940 * 179.97438 * 23 14 13 40 40 H 1.08004 * 119.41650 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2931 2.3742 0.0005 5 6 1.9215 3.6046 0.0000 6 6 3.3034 3.6832 -0.0005 7 6 4.0650 2.5327 -0.0010 8 6 5.5692 2.6239 -0.0022 9 6 6.1951 3.9788 0.3345 10 6 6.2256 3.4576 -1.1044 11 6 3.4418 1.2864 -0.0016 12 6 4.2553 0.0469 -0.0027 13 6 3.9538 -0.9733 0.8913 14 6 4.7379 -2.1429 0.8742 15 6 4.4728 -3.2109 1.7642 16 1 4.0130 -3.0146 2.7216 17 6 4.8067 -4.5223 1.4036 18 7 4.8432 -5.4611 2.3126 19 14 5.2000 -4.9300 -0.3764 20 1 6.6664 -4.8398 -0.5927 21 1 4.7384 -6.3079 -0.6822 22 1 4.5078 -3.9664 -1.2696 23 6 5.7961 -2.2185 -0.0569 24 6 6.0195 -1.1561 -0.9043 25 7 5.2604 -0.0778 -0.8620 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2144 2.3194 0.0005 30 1 1.3317 4.5093 -0.0045 31 1 3.7873 4.6487 -0.0005 32 1 6.0947 1.7296 0.3329 33 1 5.5188 4.8044 0.5564 34 1 7.1325 3.9760 0.8907 35 1 7.1831 3.1120 -1.4942 36 1 5.5694 3.9398 -1.8290 37 1 3.1336 -0.8711 1.5865 38 1 5.0747 -6.3693 2.0629 39 1 6.4225 -3.0971 -0.1036 40 1 6.8274 -1.2084 -1.6191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244253481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:35 Heat of formation + Delta-G solvation = 40.797799 kcal Electronic energy + Delta-G solvation = -23250.925731 eV Core-core repulsion = 19996.391764 eV Total energy + Delta-G solvation = -3254.533967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.17653 -38.38234 -37.92371 -35.77339 -34.05482 -32.09545 -31.21277 -29.63527 -28.58874 -27.09619 -25.88119 -23.49082 -23.11677 -22.13316 -21.36666 -20.65577 -19.81303 -17.84532 -17.13066 -16.15832 -15.97762 -15.65839 -15.44364 -15.06770 -14.60665 -14.30829 -14.10881 -13.89725 -13.30268 -13.01686 -12.78943 -12.70634 -12.36656 -12.29938 -11.71478 -11.50690 -11.36602 -11.25236 -11.04549 -10.93935 -10.79379 -10.60766 -10.41577 -10.23724 -10.09908 -9.76470 -9.35576 -8.62009 -8.19319 -8.04694 -7.96794 -7.36317 -7.02612 -4.66855 1.41816 1.66473 2.55466 2.66864 3.08155 3.18965 3.29507 3.55489 3.84974 3.92979 4.34598 4.57119 4.85407 4.90940 5.09119 5.16656 5.22224 5.29004 5.30061 5.35512 5.41809 5.52335 5.63250 5.65080 5.81552 5.88201 5.99471 6.06376 6.17878 6.30277 6.36469 6.45637 6.48819 6.60933 6.66261 6.74137 6.83450 6.96367 7.08869 7.19152 7.27614 7.68677 7.69597 7.97517 8.24874 8.48797 8.69030 9.38018 9.98999 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.005548 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.274107 B = 5045.682060 C = 6228.767958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.143 3.857 4 C -0.220 4.220 5 C -0.084 4.084 6 C -0.166 4.166 7 C 0.011 3.989 8 C -0.094 4.094 9 C -0.189 4.189 10 C -0.158 4.158 11 C -0.043 4.043 12 C 0.168 3.832 13 C -0.214 4.214 14 C 0.107 3.893 15 C -0.436 4.436 16 H 0.093 0.907 17 C 0.086 3.914 18 N -0.803 5.803 19 Si 0.917 3.083 20 H -0.269 1.269 21 H -0.292 1.292 22 H -0.244 1.244 23 C -0.290 4.290 24 C 0.115 3.885 25 N -0.554 5.554 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.287 0.713 39 H 0.106 0.894 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 13.109 -4.511 14.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.209 6.209 3 C 0.097 3.903 4 C -0.238 4.238 5 C -0.102 4.102 6 C -0.184 4.184 7 C 0.010 3.990 8 C -0.112 4.112 9 C -0.225 4.225 10 C -0.195 4.195 11 C -0.044 4.044 12 C 0.037 3.963 13 C -0.237 4.237 14 C 0.099 3.901 15 C -0.466 4.466 16 H 0.111 0.889 17 C -0.135 4.135 18 N -0.427 5.427 19 Si 0.744 3.256 20 H -0.195 1.195 21 H -0.220 1.220 22 H -0.168 1.168 23 C -0.313 4.313 24 C -0.040 4.040 25 N -0.269 5.269 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.119 13.338 -4.962 14.815 hybrid contribution -0.297 -1.091 -0.045 1.132 sum -4.416 12.247 -5.007 13.949 Atomic orbital electron populations 1.23037 0.79261 1.03854 1.00694 1.86289 1.20442 1.26163 1.87991 1.18979 0.91312 0.84430 0.95625 1.21047 0.99597 0.92218 1.10982 1.20788 0.94337 0.96616 0.98488 1.20781 0.93547 0.97783 1.06296 1.18937 0.93559 0.91045 0.95466 1.20940 0.90970 0.95478 1.03819 1.23115 1.02677 0.97565 0.99185 1.22858 1.02226 1.03049 0.91348 1.17850 0.88971 0.92689 1.04917 1.18907 0.92754 0.91381 0.93261 1.21816 1.02160 0.95858 1.03868 1.17873 0.89146 0.92808 0.90236 1.19503 1.34129 0.89886 1.03102 0.88923 1.26177 0.90995 0.96106 1.00175 1.69623 1.34033 1.03333 1.35724 0.86252 0.79507 0.77122 0.82729 1.19514 1.21957 1.16773 1.21913 1.02969 1.01062 1.05336 1.21865 0.96457 0.89502 0.96199 1.67538 1.08297 1.26008 1.25020 0.92921 0.93132 0.88320 0.85725 0.86243 0.86118 0.86132 0.88836 0.88864 0.88748 0.89081 0.87280 0.90234 0.87652 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.30 -5.42 8.63 -19.16 -0.17 -5.58 16 3 C 0.14 2.58 6.57 -38.85 -0.26 2.32 16 4 C -0.22 -3.17 9.03 -39.47 -0.36 -3.53 16 5 C -0.08 -1.11 10.03 -39.54 -0.40 -1.51 16 6 C -0.17 -2.38 9.18 -39.61 -0.36 -2.74 16 7 C 0.01 0.18 5.65 -104.31 -0.59 -0.40 16 8 C -0.09 -1.55 5.03 -91.77 -0.46 -2.01 16 9 C -0.19 -2.40 9.84 -26.69 -0.26 -2.67 16 10 C -0.16 -2.16 10.09 -26.70 -0.27 -2.43 16 11 C -0.04 -0.85 5.62 -104.77 -0.59 -1.44 16 12 C 0.17 3.85 5.39 -83.05 -0.45 3.40 16 13 C -0.21 -5.25 8.56 -38.34 -0.33 -5.58 16 14 C 0.11 2.78 5.20 -106.56 -0.55 2.22 16 15 C -0.44 -11.81 9.66 -37.65 -0.36 -12.17 16 16 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 17 C 0.09 2.23 5.46 -17.34 -0.09 2.14 16 18 N -0.80 -21.13 13.92 55.55 0.77 -20.36 16 19 Si 0.92 20.90 24.42 -169.99 -4.15 16.75 16 20 H -0.27 -5.89 6.65 56.52 0.38 -5.51 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.24 -5.83 6.70 56.52 0.38 -5.45 16 23 C -0.29 -7.07 7.17 -38.67 -0.28 -7.34 16 24 C 0.11 2.59 11.15 -17.70 -0.20 2.39 16 25 N -0.55 -12.65 8.41 -9.95 -0.08 -12.73 16 26 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 27 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 28 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.12 1.44 6.30 -52.48 -0.33 1.11 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.12 1.44 6.18 -52.49 -0.32 1.11 16 32 H 0.12 2.32 6.49 -51.93 -0.34 1.98 16 33 H 0.09 1.05 6.34 -51.93 -0.33 0.72 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.11 2.62 7.49 -52.48 -0.39 2.23 16 38 H 0.29 6.82 8.29 -40.82 -0.34 6.49 16 39 H 0.11 2.51 4.30 -52.48 -0.23 2.29 16 40 H 0.13 2.41 8.06 -52.48 -0.42 1.99 16 LS Contribution 326.73 15.07 4.92 4.92 Total: -1.00 -29.45 326.73 -8.40 -37.84 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.88 Total: 7.18 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -4.81 Total: -28.02 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.69 Total: -33.09 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.17 Total: -5.58 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.15 Total: 16.75 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.45 -8.40 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244253481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.642 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds