Wall clock time and date at job start Tue Mar 31 2020 06:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35814 * 116.99928 * 2 1 4 4 C 1.38612 * 120.12354 * 0.02562 * 3 2 1 5 5 C 1.38157 * 120.06932 * 180.02562 * 4 3 2 6 6 C 1.38418 * 120.30886 * 359.97366 * 5 4 3 7 7 C 1.37972 * 120.24624 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.03256 * 179.97438 * 7 6 5 9 9 C 1.53001 * 117.50138 * 14.38787 * 8 7 6 10 10 C 1.52996 * 117.50238 * 305.72640 * 8 7 6 11 11 C 1.39343 * 119.93377 * 0.02562 * 7 6 5 12 12 C 1.48263 * 120.15699 * 179.97438 * 11 7 6 13 13 C 1.38963 * 119.61952 * 132.22677 * 12 11 7 14 14 C 1.40816 * 118.76091 * 179.97438 * 13 12 11 15 15 C 1.41528 * 120.98560 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00189 * 332.11070 * 15 14 13 17 17 C 1.40046 * 120.00110 * 152.10338 * 15 14 13 18 18 N 1.30734 * 120.00129 * 164.85837 * 17 15 14 19 19 Si 1.86797 * 119.99946 * 344.86590 * 17 15 14 20 20 H 1.48506 * 109.47553 * 93.46066 * 19 17 15 21 21 H 1.48496 * 109.47142 * 213.46191 * 19 17 15 22 22 H 1.48503 * 109.47260 * 333.46411 * 19 17 15 23 23 C 1.41153 * 118.02975 * 359.97438 * 14 13 12 24 24 C 1.37721 * 119.08520 * 0.02562 * 23 14 13 25 25 N 1.31931 * 121.16145 * 359.74008 * 24 23 14 26 26 H 1.08995 * 109.47254 * 300.00008 * 1 2 3 27 27 H 1.08997 * 109.47040 * 60.00035 * 1 2 3 28 28 H 1.09001 * 109.46763 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.96579 * 359.97214 * 4 3 2 30 30 H 1.07995 * 119.84421 * 179.69899 * 5 4 3 31 31 H 1.07994 * 119.87458 * 180.02562 * 6 5 4 32 32 H 1.09005 * 115.54979 * 160.05631 * 8 7 6 33 33 H 1.09005 * 117.49406 * 359.97438 * 9 8 7 34 34 H 1.08996 * 117.50205 * 145.01679 * 9 8 7 35 35 H 1.08996 * 117.50092 * 214.98024 * 10 8 7 36 36 H 1.09004 * 117.49374 * 359.97438 * 10 8 7 37 37 H 1.08008 * 120.61935 * 359.95712 * 13 12 11 38 38 H 0.96996 * 120.00169 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.45940 * 179.97438 * 23 14 13 40 40 H 1.08004 * 119.41650 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2931 2.3742 0.0005 5 6 1.9215 3.6046 0.0000 6 6 3.3034 3.6832 -0.0005 7 6 4.0650 2.5327 -0.0010 8 6 5.5692 2.6239 -0.0022 9 6 6.1951 3.9788 0.3345 10 6 6.2256 3.4576 -1.1044 11 6 3.4418 1.2864 -0.0016 12 6 4.2553 0.0469 -0.0027 13 6 3.9538 -0.9733 0.8913 14 6 4.7379 -2.1429 0.8742 15 6 4.4728 -3.2109 1.7642 16 1 4.0130 -3.0146 2.7216 17 6 4.8067 -4.5223 1.4036 18 7 4.8432 -5.4611 2.3126 19 14 5.2000 -4.9300 -0.3764 20 1 6.6664 -4.8398 -0.5927 21 1 4.7384 -6.3079 -0.6822 22 1 4.5078 -3.9664 -1.2696 23 6 5.7961 -2.2185 -0.0569 24 6 6.0195 -1.1561 -0.9043 25 7 5.2604 -0.0778 -0.8620 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2144 2.3194 0.0005 30 1 1.3317 4.5093 -0.0045 31 1 3.7873 4.6487 -0.0005 32 1 6.0947 1.7296 0.3329 33 1 5.5188 4.8044 0.5564 34 1 7.1325 3.9760 0.8907 35 1 7.1831 3.1120 -1.4942 36 1 5.5694 3.9398 -1.8290 37 1 3.1336 -0.8711 1.5865 38 1 5.0747 -6.3693 2.0629 39 1 6.4225 -3.0971 -0.1036 40 1 6.8274 -1.2084 -1.6191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244253481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:34 Heat of formation + Delta-G solvation = 24.516159 kcal Electronic energy + Delta-G solvation = -23251.631756 eV Core-core repulsion = 19996.391764 eV Total energy + Delta-G solvation = -3255.239992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47945 -40.05711 -39.18087 -36.90357 -35.99237 -33.67277 -33.06370 -30.80608 -30.12023 -28.19705 -27.81568 -24.89285 -24.43965 -23.21738 -23.07310 -22.23658 -21.04906 -19.56536 -18.46739 -17.78366 -17.39118 -17.06644 -16.71183 -16.45534 -16.18248 -16.05128 -15.44945 -15.24726 -14.83022 -14.57831 -14.33865 -14.19059 -13.66401 -13.62317 -13.35526 -12.90399 -12.76708 -12.64079 -12.53239 -12.38595 -12.24821 -12.05493 -11.80228 -11.62694 -11.33004 -11.24114 -11.19410 -10.21435 -10.10126 -9.83042 -9.21425 -9.00427 -8.88639 -6.72903 0.07308 0.47748 0.72609 0.89669 1.21799 1.36763 1.44136 2.06352 2.42784 2.56903 2.72487 3.22932 3.43375 3.59387 3.74359 4.01676 4.04489 4.15117 4.22164 4.25101 4.30522 4.39337 4.41856 4.46370 4.51494 4.69177 4.72069 4.75793 4.81962 4.86830 4.94570 5.02042 5.12928 5.21961 5.29487 5.31263 5.32298 5.43533 5.53302 5.68404 5.73796 5.93010 6.04591 6.20906 6.51789 6.56319 6.65634 7.53251 8.07233 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.005548 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.274107 B = 5045.682060 C = 6228.767958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.128 3.872 4 C -0.219 4.219 5 C -0.066 4.066 6 C -0.166 4.166 7 C 0.006 3.994 8 C -0.131 4.131 9 C -0.161 4.161 10 C -0.149 4.149 11 C -0.099 4.099 12 C 0.181 3.819 13 C -0.238 4.238 14 C 0.094 3.906 15 C -0.472 4.472 16 H 0.058 0.942 17 C 0.054 3.946 18 N -0.836 5.836 19 Si 0.971 3.029 20 H -0.249 1.249 21 H -0.273 1.273 22 H -0.263 1.263 23 C -0.303 4.303 24 C 0.114 3.886 25 N -0.550 5.550 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.156 0.844 30 H 0.165 0.835 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.299 0.701 39 H 0.112 0.888 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 16.359 -6.490 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.081 3.919 4 C -0.237 4.237 5 C -0.084 4.084 6 C -0.184 4.184 7 C 0.005 3.995 8 C -0.149 4.149 9 C -0.198 4.198 10 C -0.185 4.185 11 C -0.101 4.101 12 C 0.050 3.950 13 C -0.260 4.260 14 C 0.086 3.914 15 C -0.503 4.503 16 H 0.076 0.924 17 C -0.163 4.163 18 N -0.462 5.462 19 Si 0.794 3.206 20 H -0.174 1.174 21 H -0.200 1.200 22 H -0.188 1.188 23 C -0.325 4.325 24 C -0.041 4.041 25 N -0.264 5.264 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.173 0.827 30 H 0.183 0.817 31 H 0.170 0.830 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.526 16.581 -6.923 18.529 hybrid contribution -0.254 -1.868 0.574 1.970 sum -4.780 14.713 -6.349 16.722 Atomic orbital electron populations 1.23323 0.76753 1.04958 1.02557 1.86224 1.23299 1.27294 1.88232 1.19246 0.91040 0.85527 0.96039 1.21416 1.01014 0.91377 1.09891 1.21353 0.94272 0.97678 0.95049 1.21130 0.94134 0.97813 1.05317 1.19146 0.94152 0.91105 0.95065 1.20824 0.90788 0.96029 1.07276 1.23228 1.02787 0.95502 0.98256 1.22931 1.02000 1.01789 0.91827 1.18021 0.89967 0.92356 1.09720 1.19374 0.92121 0.92151 0.91398 1.21845 1.02492 0.96761 1.04909 1.18051 0.89856 0.92895 0.90600 1.19457 1.36553 0.91568 1.02726 0.92359 1.26808 0.90580 0.95377 1.03551 1.69631 1.35174 1.04104 1.37282 0.85438 0.80182 0.77126 0.77806 1.17415 1.19995 1.18769 1.22039 1.02802 1.02111 1.05587 1.22462 0.96937 0.88623 0.96069 1.67713 1.08195 1.25825 1.24661 0.91122 0.90966 0.87847 0.82685 0.81735 0.83003 0.90022 0.86506 0.88002 0.88583 0.87943 0.88406 0.89065 0.87053 0.81982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.56 16 2 O -0.34 -12.60 8.63 -91.46 -0.79 -13.39 16 3 C 0.13 4.56 6.57 22.75 0.15 4.71 16 4 C -0.22 -5.64 9.03 22.34 0.20 -5.44 16 5 C -0.07 -1.43 10.03 22.29 0.22 -1.20 16 6 C -0.17 -4.13 9.18 22.25 0.20 -3.92 16 7 C 0.01 0.20 5.65 -19.66 -0.11 0.09 16 8 C -0.13 -4.18 5.03 -11.54 -0.06 -4.24 16 9 C -0.16 -3.62 9.84 30.62 0.30 -3.32 16 10 C -0.15 -3.70 10.09 30.62 0.31 -3.39 16 11 C -0.10 -4.00 5.62 -19.96 -0.11 -4.11 16 12 C 0.18 8.61 5.39 41.84 0.23 8.84 16 13 C -0.24 -12.42 8.56 23.07 0.20 -12.23 16 14 C 0.09 5.14 5.20 -21.12 -0.11 5.03 16 15 C -0.47 -27.48 9.66 23.52 0.23 -27.25 16 16 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 17 C 0.05 2.92 5.46 85.29 0.47 3.39 16 18 N -0.84 -45.74 13.92 21.84 0.30 -45.44 16 19 Si 0.97 43.68 24.42 68.60 1.68 45.35 16 20 H -0.25 -10.34 6.65 99.48 0.66 -9.68 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.26 -12.57 6.70 99.48 0.67 -11.90 16 23 C -0.30 -15.08 7.17 22.86 0.16 -14.91 16 24 C 0.11 5.14 11.15 84.56 0.94 6.09 16 25 N -0.55 -25.44 8.41 -185.41 -1.56 -27.00 16 26 H 0.07 1.42 7.66 -2.39 -0.02 1.40 16 27 H 0.07 1.41 7.66 -2.39 -0.02 1.39 16 28 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.16 2.95 6.30 -2.91 -0.02 2.94 16 30 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.15 2.77 6.18 -2.91 -0.02 2.75 16 32 H 0.08 3.23 6.49 -2.38 -0.02 3.21 16 33 H 0.12 2.08 6.34 -2.38 -0.02 2.06 16 34 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.10 5.17 7.49 -2.91 -0.02 5.15 16 38 H 0.30 14.51 8.29 -92.71 -0.77 13.74 16 39 H 0.11 5.32 4.30 -2.91 -0.01 5.31 16 40 H 0.16 5.96 8.06 -2.91 -0.02 5.94 16 Total: -1.00 -69.37 326.73 4.94 -64.43 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.98 Total: 26.37 kcal Atomic # 6 Polarization: -54.66 SS G_CDS: 4.33 Total: -50.32 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -1.26 Total: -72.44 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.79 Total: -13.39 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.68 Total: 45.35 kcal Total: -69.37 4.94 -64.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244253481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.947 kcal (2) G-P(sol) polarization free energy of solvation -69.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds