Wall clock time and date at job start Tue Mar 31 2020 06:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35850 * 116.99813 * 2 1 4 4 C 1.38584 * 120.11797 * 359.97017 * 3 2 1 5 5 C 1.38178 * 120.06193 * 180.02562 * 4 3 2 6 6 C 1.38386 * 120.29935 * 0.02562 * 5 4 3 7 7 C 1.38006 * 120.24126 * 359.67813 * 6 5 4 8 8 C 1.50700 * 120.03700 * 180.31847 * 7 6 5 9 9 C 1.52999 * 117.49888 * 9.03077 * 8 7 6 10 10 C 1.52991 * 117.50424 * 300.36383 * 8 7 6 11 11 C 1.39293 * 119.93092 * 0.59947 * 7 6 5 12 12 C 1.48350 * 120.15231 * 179.69555 * 11 7 6 13 13 C 1.39745 * 120.41037 * 64.74707 * 12 11 7 14 14 N 1.31909 * 121.14461 * 179.97438 * 13 12 11 15 15 C 1.31521 * 122.12103 * 0.02562 * 14 13 12 16 16 C 1.40778 * 120.67601 * 359.71450 * 15 14 13 17 17 C 1.41438 * 120.60701 * 180.31255 * 16 15 14 18 18 H 1.08001 * 119.99935 * 23.73189 * 17 16 15 19 19 C 1.39927 * 120.00060 * 203.73435 * 17 16 15 20 20 N 1.30836 * 120.00384 * 17.55905 * 19 17 16 21 21 Si 1.86801 * 120.00247 * 197.55840 * 19 17 16 22 22 H 1.48504 * 109.46799 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47243 * 119.99784 * 21 19 17 24 24 H 1.48501 * 109.47042 * 240.00242 * 21 19 17 25 25 C 1.39156 * 120.41607 * 244.72439 * 12 11 7 26 26 H 1.09009 * 109.46526 * 60.00609 * 1 2 3 27 27 H 1.08998 * 109.46743 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47594 * 300.00479 * 1 2 3 29 29 H 1.08002 * 119.96672 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.85023 * 180.02562 * 5 4 3 31 31 H 1.08006 * 119.87614 * 179.97438 * 6 5 4 32 32 H 1.09004 * 115.54383 * 154.69347 * 8 7 6 33 33 H 1.09004 * 117.49711 * 359.97438 * 9 8 7 34 34 H 1.08997 * 117.49975 * 145.02008 * 9 8 7 35 35 H 1.08997 * 117.50251 * 214.97754 * 10 8 7 36 36 H 1.09008 * 117.49559 * 359.97438 * 10 8 7 37 37 H 1.08002 * 119.42199 * 0.02562 * 13 12 11 38 38 H 1.08002 * 119.66323 * 180.02562 * 15 14 13 39 39 H 0.96993 * 120.00680 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.95186 * 0.02598 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2933 2.3742 -0.0006 5 6 1.9218 3.6048 -0.0012 6 6 3.3034 3.6832 -0.0016 7 6 4.0648 2.5322 0.0052 8 6 5.5691 2.6229 0.0119 9 6 6.1926 4.0039 0.2239 10 6 6.2385 3.3468 -1.1579 11 6 3.4416 1.2865 -0.0001 12 6 4.2553 0.0461 0.0003 13 6 5.0689 -0.2658 1.0929 14 7 5.7980 -1.3649 1.1088 15 6 5.7993 -2.2178 0.1076 16 6 5.0060 -1.9883 -1.0325 17 6 5.0034 -2.9098 -2.1055 18 1 5.2773 -3.9401 -1.9330 19 6 4.6461 -2.4864 -3.3904 20 7 4.6488 -1.2113 -3.6835 21 14 4.1653 -3.7418 -4.6875 22 1 4.2433 -5.1069 -4.1080 23 1 2.7774 -3.4756 -5.1435 24 1 5.0937 -3.6409 -5.8421 25 6 4.2177 -0.8216 -1.0870 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2147 2.3193 -0.0007 30 1 1.3320 4.5096 -0.0012 31 1 3.7875 4.6486 -0.0024 32 1 6.0898 1.7649 0.4371 33 1 5.5147 4.8469 0.3581 34 1 7.1238 4.0544 0.7882 35 1 7.1998 2.9655 -1.5021 36 1 5.5908 3.7572 -1.9328 37 1 5.1006 0.4044 1.9392 38 1 6.4114 -3.1059 0.1628 39 1 4.4014 -0.9179 -4.5743 40 1 3.5992 -0.6087 -1.9463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244254554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:50 Heat of formation + Delta-G solvation = 34.830427 kcal Electronic energy + Delta-G solvation = -23438.111724 eV Core-core repulsion = 20183.318992 eV Total energy + Delta-G solvation = -3254.792732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.05481 -38.19547 -37.76931 -35.70855 -34.03385 -32.35272 -30.28471 -29.53719 -28.44504 -26.98669 -25.55054 -23.38391 -22.85368 -22.06334 -21.45365 -20.39693 -19.74508 -17.57574 -17.00278 -16.07548 -15.73971 -15.45007 -15.41180 -15.04278 -14.89554 -14.34481 -14.06018 -13.61680 -13.24164 -12.88062 -12.45468 -12.37354 -12.11466 -11.65071 -11.60959 -11.47910 -11.35173 -11.20520 -11.12314 -11.02086 -10.92427 -10.57347 -10.53339 -10.19787 -10.06307 -9.74542 -9.34365 -8.46393 -8.10200 -7.94096 -7.68489 -7.32038 -6.80750 -4.43662 1.59343 1.77874 2.64742 2.95879 3.04120 3.09423 3.23201 3.63335 3.87916 3.92023 4.40003 4.60957 4.91271 5.05826 5.21381 5.25988 5.28146 5.33656 5.36641 5.38643 5.59824 5.65680 5.73931 5.79453 5.88712 6.05681 6.07252 6.15006 6.30246 6.36230 6.47003 6.64434 6.67503 6.70912 6.83638 6.95145 7.02375 7.13245 7.15366 7.31191 7.75621 7.80837 7.92482 8.01484 8.47402 8.72487 8.77039 9.68653 10.10035 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012744 B = 0.006048 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.514431 B = 4628.794600 C = 5304.976925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.298 6.298 3 C 0.137 3.863 4 C -0.218 4.218 5 C -0.091 4.091 6 C -0.162 4.162 7 C -0.004 4.004 8 C -0.111 4.111 9 C -0.182 4.182 10 C -0.163 4.163 11 C -0.037 4.037 12 C -0.076 4.076 13 C -0.024 4.024 14 N -0.470 5.470 15 C -0.024 4.024 16 C 0.063 3.937 17 C -0.450 4.450 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.788 5.788 21 Si 0.908 3.092 22 H -0.259 1.259 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.100 4.100 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.281 0.719 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 8.843 2.331 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.210 6.210 3 C 0.092 3.908 4 C -0.237 4.237 5 C -0.109 4.109 6 C -0.180 4.180 7 C -0.004 4.004 8 C -0.129 4.129 9 C -0.219 4.219 10 C -0.200 4.200 11 C -0.039 4.039 12 C -0.078 4.078 13 C -0.182 4.182 14 N -0.177 5.177 15 C -0.184 4.184 16 C 0.058 3.942 17 C -0.480 4.480 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.412 5.412 21 Si 0.732 3.268 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.199 1.199 25 C -0.126 4.126 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.068 0.932 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.092 0.908 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.470 8.630 2.856 10.610 hybrid contribution -1.161 -0.132 -1.538 1.931 sum -6.632 8.499 1.318 10.860 Atomic orbital electron populations 1.23004 0.79503 1.03609 1.00617 1.86249 1.20197 1.26432 1.88170 1.19033 0.91556 0.84156 0.96097 1.21055 0.99474 0.92382 1.10761 1.20738 0.94330 0.96526 0.99291 1.20775 0.93529 0.97739 1.05929 1.18936 0.93325 0.91270 0.96891 1.21127 0.91273 0.96620 1.03847 1.23060 1.02579 0.95939 1.00278 1.22934 1.02323 1.03353 0.91389 1.18075 0.89307 0.93449 1.03031 1.19134 0.98475 0.93660 0.96532 1.21654 1.01788 0.97029 0.97725 1.66915 1.19486 1.02835 1.28471 1.22464 1.03039 1.00019 0.92924 1.18458 0.89779 0.92694 0.93222 1.19552 1.39657 0.97000 0.91785 0.89946 1.25942 0.92686 0.95812 0.99903 1.69813 1.33715 1.15848 1.21854 0.86254 0.78953 0.81653 0.79890 1.18232 1.19701 1.19905 1.21660 0.99352 0.94693 0.96880 0.93094 0.88536 0.93168 0.85980 0.86410 0.86200 0.85755 0.88754 0.88754 0.88586 0.88863 0.86571 0.85847 0.90765 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.30 -5.75 9.71 -19.27 -0.19 -5.94 16 3 C 0.14 2.62 6.66 -38.87 -0.26 2.36 16 4 C -0.22 -3.39 9.03 -39.48 -0.36 -3.74 16 5 C -0.09 -1.29 10.03 -39.55 -0.40 -1.69 16 6 C -0.16 -2.48 9.28 -39.61 -0.37 -2.84 16 7 C 0.00 -0.07 5.63 -104.32 -0.59 -0.66 16 8 C -0.11 -1.92 5.47 -91.78 -0.50 -2.42 16 9 C -0.18 -2.45 9.86 -26.69 -0.26 -2.71 16 10 C -0.16 -2.51 10.16 -26.69 -0.27 -2.78 16 11 C -0.04 -0.78 5.35 -104.76 -0.56 -1.34 16 12 C -0.08 -1.80 4.24 -104.83 -0.44 -2.25 16 13 C -0.02 -0.57 9.04 -16.96 -0.15 -0.72 16 14 N -0.47 -11.86 10.32 -12.27 -0.13 -11.99 16 15 C -0.02 -0.61 10.96 -16.73 -0.18 -0.79 16 16 C 0.06 1.68 5.59 -106.71 -0.60 1.08 16 17 C -0.45 -11.75 9.08 -37.73 -0.34 -12.10 16 18 H 0.08 2.05 7.90 -52.49 -0.41 1.64 16 19 C 0.08 1.85 5.18 -17.34 -0.09 1.77 16 20 N -0.79 -20.09 10.92 55.55 0.61 -19.48 16 21 Si 0.91 18.39 29.59 -169.99 -5.03 13.36 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 25 C -0.10 -2.62 8.25 -38.23 -0.32 -2.94 16 26 H 0.05 0.61 7.66 -51.92 -0.40 0.21 16 27 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 29 H 0.12 1.55 6.30 -52.49 -0.33 1.22 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.54 6.02 -52.48 -0.32 1.22 16 32 H 0.12 2.44 5.87 -51.93 -0.30 2.13 16 33 H 0.09 1.12 6.19 -51.93 -0.32 0.80 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 37 H 0.12 2.54 8.01 -52.49 -0.42 2.12 16 38 H 0.12 2.94 8.06 -52.49 -0.42 2.52 16 39 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 40 H 0.13 3.48 6.19 -52.49 -0.32 3.15 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -29.29 334.28 -9.30 -38.59 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -4.90 Total: 10.83 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -4.70 Total: -30.41 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.48 Total: -31.47 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.19 Total: -5.94 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.29 -9.30 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244254554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.420 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds