Wall clock time and date at job start Tue Mar 31 2020 06:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35850 * 116.99813 * 2 1 4 4 C 1.38584 * 120.11797 * 359.97017 * 3 2 1 5 5 C 1.38178 * 120.06193 * 180.02562 * 4 3 2 6 6 C 1.38386 * 120.29935 * 0.02562 * 5 4 3 7 7 C 1.38006 * 120.24126 * 359.67813 * 6 5 4 8 8 C 1.50700 * 120.03700 * 180.31847 * 7 6 5 9 9 C 1.52999 * 117.49888 * 9.03077 * 8 7 6 10 10 C 1.52991 * 117.50424 * 300.36383 * 8 7 6 11 11 C 1.39293 * 119.93092 * 0.59947 * 7 6 5 12 12 C 1.48350 * 120.15231 * 179.69555 * 11 7 6 13 13 C 1.39745 * 120.41037 * 64.74707 * 12 11 7 14 14 N 1.31909 * 121.14461 * 179.97438 * 13 12 11 15 15 C 1.31521 * 122.12103 * 0.02562 * 14 13 12 16 16 C 1.40778 * 120.67601 * 359.71450 * 15 14 13 17 17 C 1.41438 * 120.60701 * 180.31255 * 16 15 14 18 18 H 1.08001 * 119.99935 * 23.73189 * 17 16 15 19 19 C 1.39927 * 120.00060 * 203.73435 * 17 16 15 20 20 N 1.30836 * 120.00384 * 17.55905 * 19 17 16 21 21 Si 1.86801 * 120.00247 * 197.55840 * 19 17 16 22 22 H 1.48504 * 109.46799 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47243 * 119.99784 * 21 19 17 24 24 H 1.48501 * 109.47042 * 240.00242 * 21 19 17 25 25 C 1.39156 * 120.41607 * 244.72439 * 12 11 7 26 26 H 1.09009 * 109.46526 * 60.00609 * 1 2 3 27 27 H 1.08998 * 109.46743 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47594 * 300.00479 * 1 2 3 29 29 H 1.08002 * 119.96672 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.85023 * 180.02562 * 5 4 3 31 31 H 1.08006 * 119.87614 * 179.97438 * 6 5 4 32 32 H 1.09004 * 115.54383 * 154.69347 * 8 7 6 33 33 H 1.09004 * 117.49711 * 359.97438 * 9 8 7 34 34 H 1.08997 * 117.49975 * 145.02008 * 9 8 7 35 35 H 1.08997 * 117.50251 * 214.97754 * 10 8 7 36 36 H 1.09008 * 117.49559 * 359.97438 * 10 8 7 37 37 H 1.08002 * 119.42199 * 0.02562 * 13 12 11 38 38 H 1.08002 * 119.66323 * 180.02562 * 15 14 13 39 39 H 0.96993 * 120.00680 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.95186 * 0.02598 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2933 2.3742 -0.0006 5 6 1.9218 3.6048 -0.0012 6 6 3.3034 3.6832 -0.0016 7 6 4.0648 2.5322 0.0052 8 6 5.5691 2.6229 0.0119 9 6 6.1926 4.0039 0.2239 10 6 6.2385 3.3468 -1.1579 11 6 3.4416 1.2865 -0.0001 12 6 4.2553 0.0461 0.0003 13 6 5.0689 -0.2658 1.0929 14 7 5.7980 -1.3649 1.1088 15 6 5.7993 -2.2178 0.1076 16 6 5.0060 -1.9883 -1.0325 17 6 5.0034 -2.9098 -2.1055 18 1 5.2773 -3.9401 -1.9330 19 6 4.6461 -2.4864 -3.3904 20 7 4.6488 -1.2113 -3.6835 21 14 4.1653 -3.7418 -4.6875 22 1 4.2433 -5.1069 -4.1080 23 1 2.7774 -3.4756 -5.1435 24 1 5.0937 -3.6409 -5.8421 25 6 4.2177 -0.8216 -1.0870 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2147 2.3193 -0.0007 30 1 1.3320 4.5096 -0.0012 31 1 3.7875 4.6486 -0.0024 32 1 6.0898 1.7649 0.4371 33 1 5.5147 4.8469 0.3581 34 1 7.1238 4.0544 0.7882 35 1 7.1998 2.9655 -1.5021 36 1 5.5908 3.7572 -1.9328 37 1 5.1006 0.4044 1.9392 38 1 6.4114 -3.1059 0.1628 39 1 4.4014 -0.9179 -4.5743 40 1 3.5992 -0.6087 -1.9463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244254554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:49 Heat of formation + Delta-G solvation = 19.720733 kcal Electronic energy + Delta-G solvation = -23438.766930 eV Core-core repulsion = 20183.318992 eV Total energy + Delta-G solvation = -3255.447937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41127 -39.90485 -39.17838 -36.93235 -35.95972 -33.93142 -32.24697 -30.78931 -29.99526 -28.14617 -27.49950 -24.72170 -24.35244 -23.43034 -23.16911 -21.97282 -21.05267 -19.27747 -18.45258 -17.61057 -17.27384 -17.03996 -16.84805 -16.57769 -16.22699 -16.06924 -15.38056 -15.04545 -14.58404 -14.37074 -14.07435 -13.69514 -13.58892 -13.46355 -13.31930 -13.15219 -12.81362 -12.73659 -12.49681 -12.32250 -12.21317 -12.07328 -11.96222 -11.50003 -11.36525 -11.25961 -11.19892 -10.14448 -10.07389 -9.61314 -9.23252 -8.91135 -8.69479 -6.44528 0.26021 0.49002 0.83945 1.09339 1.36095 1.48475 1.52484 2.16882 2.44469 2.65831 2.72020 3.16639 3.66483 3.71609 3.84311 3.99933 4.07488 4.15286 4.17005 4.21787 4.27489 4.37310 4.45945 4.48013 4.64054 4.67505 4.77178 4.82853 4.88850 4.95099 5.05904 5.08171 5.14199 5.20779 5.24900 5.31896 5.43365 5.52192 5.69690 5.85615 5.90978 5.96049 6.03841 6.47322 6.60161 6.76015 6.79590 7.69747 8.24174 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012744 B = 0.006048 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.514431 B = 4628.794600 C = 5304.976925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.120 3.880 4 C -0.216 4.216 5 C -0.074 4.074 6 C -0.162 4.162 7 C -0.009 4.009 8 C -0.145 4.145 9 C -0.142 4.142 10 C -0.170 4.170 11 C -0.091 4.091 12 C -0.056 4.056 13 C -0.031 4.031 14 N -0.478 5.478 15 C -0.047 4.047 16 C 0.039 3.961 17 C -0.481 4.481 18 H 0.085 0.915 19 C 0.035 3.965 20 N -0.816 5.816 21 Si 0.985 3.015 22 H -0.255 1.255 23 H -0.265 1.265 24 H -0.263 1.263 25 C -0.123 4.123 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.152 0.848 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.290 0.710 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.775 11.353 1.919 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.075 3.925 4 C -0.235 4.235 5 C -0.092 4.092 6 C -0.179 4.179 7 C -0.009 4.009 8 C -0.164 4.164 9 C -0.179 4.179 10 C -0.207 4.207 11 C -0.093 4.093 12 C -0.059 4.059 13 C -0.189 4.189 14 N -0.186 5.186 15 C -0.207 4.207 16 C 0.035 3.965 17 C -0.510 4.510 18 H 0.103 0.897 19 C -0.181 4.181 20 N -0.441 5.441 21 Si 0.805 3.195 22 H -0.178 1.178 23 H -0.189 1.189 24 H -0.187 1.187 25 C -0.149 4.149 26 H 0.083 0.917 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.171 0.829 30 H 0.181 0.819 31 H 0.170 0.830 32 H 0.108 0.892 33 H 0.140 0.860 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.101 0.899 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.204 11.147 2.463 13.499 hybrid contribution -0.663 -0.782 -1.354 1.699 sum -7.868 10.365 1.109 13.060 Atomic orbital electron populations 1.23306 0.76846 1.04967 1.02358 1.86182 1.23208 1.27489 1.88441 1.19270 0.91265 0.85314 0.96684 1.21421 1.00911 0.91541 1.09603 1.21301 0.94258 0.97613 0.96024 1.21132 0.94135 0.97788 1.04871 1.19107 0.93776 0.91369 0.96683 1.21047 0.91263 0.97914 1.06145 1.23187 1.02853 0.93972 0.97865 1.22980 1.01848 1.03614 0.92259 1.18199 0.90352 0.93063 1.07646 1.19346 0.97310 0.94275 0.94929 1.21974 1.01687 0.96824 0.98442 1.66897 1.19887 1.03292 1.28475 1.22616 1.03987 1.00872 0.93251 1.18804 0.90273 0.93465 0.94001 1.19826 1.41324 0.97105 0.92767 0.89708 1.26846 0.91752 0.97850 1.01636 1.69878 1.33608 1.17744 1.22851 0.85112 0.78821 0.78744 0.76810 1.17785 1.18916 1.18750 1.21541 1.00161 0.95851 0.97348 0.91657 0.87615 0.90877 0.82892 0.81876 0.83033 0.89195 0.86040 0.87323 0.89251 0.88411 0.85005 0.84939 0.89947 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.81 113.37 1.11 1.61 16 2 O -0.34 -13.36 9.71 -91.87 -0.89 -14.25 16 3 C 0.12 4.57 6.66 22.73 0.15 4.72 16 4 C -0.22 -6.10 9.03 22.34 0.20 -5.90 16 5 C -0.07 -1.79 10.03 22.29 0.22 -1.57 16 6 C -0.16 -4.40 9.28 22.25 0.21 -4.19 16 7 C -0.01 -0.33 5.63 -19.67 -0.11 -0.44 16 8 C -0.15 -5.05 5.47 -11.54 -0.06 -5.12 16 9 C -0.14 -3.47 9.86 30.62 0.30 -3.17 16 10 C -0.17 -5.12 10.16 30.62 0.31 -4.81 16 11 C -0.09 -3.89 5.35 -19.95 -0.11 -4.00 16 12 C -0.06 -2.83 4.24 -20.00 -0.08 -2.92 16 13 C -0.03 -1.56 9.04 85.05 0.77 -0.80 16 14 N -0.48 -25.39 10.32 -192.74 -1.99 -27.38 16 15 C -0.05 -2.57 10.96 85.36 0.94 -1.63 16 16 C 0.04 2.21 5.59 -21.22 -0.12 2.09 16 17 C -0.48 -26.32 9.08 23.47 0.21 -26.11 16 18 H 0.08 4.42 7.90 -2.91 -0.02 4.40 16 19 C 0.04 1.79 5.18 85.25 0.44 2.23 16 20 N -0.82 -43.10 10.92 21.82 0.24 -42.86 16 21 Si 0.99 38.11 29.59 68.60 2.03 40.14 16 22 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 25 C -0.12 -6.86 8.25 23.14 0.19 -6.67 16 26 H 0.06 1.45 7.66 -2.38 -0.02 1.43 16 27 H 0.11 2.41 8.14 -2.39 -0.02 2.40 16 28 H 0.07 1.49 7.66 -2.39 -0.02 1.48 16 29 H 0.15 3.25 6.30 -2.91 -0.02 3.24 16 30 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 31 H 0.15 3.09 6.02 -2.91 -0.02 3.08 16 32 H 0.09 3.71 5.87 -2.39 -0.01 3.70 16 33 H 0.12 2.30 6.19 -2.39 -0.01 2.29 16 34 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 37 H 0.13 6.04 8.01 -2.91 -0.02 6.01 16 38 H 0.13 6.72 8.06 -2.91 -0.02 6.70 16 39 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 40 H 0.11 6.28 6.19 -2.91 -0.02 6.26 16 Total: -1.00 -68.72 334.28 5.02 -63.69 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: 1.06 Total: 37.32 kcal Atomic # 6 Polarization: -61.24 SS G_CDS: 4.57 Total: -56.66 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -1.75 Total: -70.24 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.89 Total: -14.25 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -68.72 5.02 -63.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244254554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.414 kcal (2) G-P(sol) polarization free energy of solvation -68.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds