Wall clock time and date at job start Tue Mar 31 2020 06:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35819 * 117.00051 * 2 1 4 4 C 1.38605 * 120.11993 * 359.97438 * 3 2 1 5 5 C 1.38161 * 120.06236 * 180.02562 * 4 3 2 6 6 C 1.38413 * 120.30990 * 359.97438 * 5 4 3 7 7 C 1.37973 * 120.24327 * 359.74286 * 6 5 4 8 8 C 1.50703 * 120.03651 * 180.26200 * 7 6 5 9 9 C 1.53009 * 117.49756 * 8.99689 * 8 7 6 10 10 C 1.53002 * 117.49633 * 300.34088 * 8 7 6 11 11 C 1.39335 * 119.93360 * 0.51299 * 7 6 5 12 12 C 1.48291 * 120.15486 * 179.76488 * 11 7 6 13 13 C 1.40074 * 120.82757 * 294.72840 * 12 11 7 14 14 C 1.38475 * 119.41962 * 179.97438 * 13 12 11 15 15 N 1.31493 * 121.15120 * 359.97438 * 14 13 12 16 16 C 1.33658 * 121.80312 * 0.02562 * 15 14 13 17 17 C 1.41435 * 119.77507 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99734 * 180.02562 * 17 16 15 19 19 C 1.40025 * 119.99858 * 359.97438 * 17 16 15 20 20 N 1.30736 * 120.00556 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99799 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46861 * 90.00223 * 21 19 17 23 23 H 1.48500 * 109.46977 * 210.00243 * 21 19 17 24 24 H 1.48499 * 109.47212 * 330.00464 * 21 19 17 25 25 C 1.39370 * 120.82016 * 114.67542 * 12 11 7 26 26 H 1.08998 * 109.47285 * 300.00136 * 1 2 3 27 27 H 1.09003 * 109.47012 * 59.99983 * 1 2 3 28 28 H 1.08997 * 109.47211 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.97268 * 359.97438 * 4 3 2 30 30 H 1.08005 * 119.84476 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.87542 * 180.02562 * 6 5 4 32 32 H 1.08998 * 115.55491 * 154.67109 * 8 7 6 33 33 H 1.09002 * 117.49345 * 0.02562 * 9 8 7 34 34 H 1.08995 * 117.49594 * 145.02111 * 9 8 7 35 35 H 1.09000 * 117.50092 * 214.97585 * 10 8 7 36 36 H 1.09000 * 117.50123 * 359.97438 * 10 8 7 37 37 H 1.08004 * 120.29009 * 0.24577 * 13 12 11 38 38 H 1.08002 * 119.42151 * 180.02562 * 14 13 12 39 39 H 0.96996 * 120.00183 * 179.97438 * 20 19 17 40 40 H 1.07991 * 120.58771 * 0.04859 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2931 2.3742 -0.0005 5 6 1.9216 3.6046 -0.0011 6 6 3.3035 3.6831 -0.0005 7 6 4.0649 2.5325 0.0059 8 6 5.5692 2.6234 0.0124 9 6 6.1925 4.0047 0.2238 10 6 6.2382 3.3473 -1.1578 11 6 3.4417 1.2863 0.0010 12 6 4.2553 0.0465 0.0026 13 6 5.0747 -0.2757 -1.0868 14 6 5.8226 -1.4407 -1.0542 15 7 5.7774 -2.2493 -0.0183 16 6 5.0123 -1.9884 1.0461 17 6 4.9967 -2.8879 2.1374 18 1 4.3796 -2.6808 2.9991 19 6 5.7808 -4.0475 2.1001 20 7 6.5275 -4.2985 1.0568 21 14 5.7607 -5.2353 3.5418 22 1 4.6948 -6.2481 3.3339 23 1 7.0772 -5.9152 3.6413 24 1 5.4942 -4.4866 4.7963 25 6 4.2245 -0.8264 1.0887 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2146 2.3194 -0.0014 30 1 1.3319 4.5094 -0.0019 31 1 3.7875 4.6486 -0.0005 32 1 6.0903 1.7657 0.4377 33 1 5.5145 4.8475 0.3586 34 1 7.1238 4.0555 0.7879 35 1 7.1996 2.9661 -1.5021 36 1 5.5904 3.7574 -1.9326 37 1 5.1261 0.3808 -1.9428 38 1 6.4547 -1.6890 -1.8940 39 1 7.0709 -5.1016 1.0311 40 1 3.6056 -0.6133 1.9476 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244256928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:56 Heat of formation + Delta-G solvation = 46.827703 kcal Electronic energy + Delta-G solvation = -23094.990084 eV Core-core repulsion = 19840.717593 eV Total energy + Delta-G solvation = -3254.272491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.12138 -38.18728 -37.71660 -35.80373 -33.66274 -32.25579 -29.90514 -29.61898 -28.73484 -27.05930 -25.59416 -23.46253 -22.96438 -22.15649 -21.18893 -20.53508 -19.83586 -17.71875 -16.99238 -16.11724 -15.77889 -15.50619 -15.31750 -14.91754 -14.29914 -14.23739 -14.06789 -13.80593 -13.32030 -12.87509 -12.61819 -12.38815 -12.03361 -11.99172 -11.68727 -11.41595 -11.25364 -11.15674 -11.08973 -11.02382 -10.71058 -10.56896 -10.31297 -10.25192 -10.14018 -9.86167 -9.29961 -8.41789 -8.03433 -7.60128 -7.53618 -7.47428 -6.32066 -4.43395 1.49504 1.68805 2.83418 3.01805 3.12479 3.15707 3.24911 3.56136 3.83027 4.00161 4.30442 4.79510 4.83059 4.97829 5.10201 5.18059 5.20884 5.26768 5.28288 5.29490 5.56475 5.61593 5.67660 5.78004 5.95161 6.00185 6.03152 6.17493 6.20907 6.25337 6.36863 6.55837 6.61570 6.66019 6.82915 6.87190 6.98056 7.05197 7.21062 7.42920 7.60918 7.74907 7.82598 8.10725 8.30940 8.74185 9.01090 10.20629 10.40159 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.005009 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.766445 B = 5588.239059 C = 6650.299062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.296 6.296 3 C 0.139 3.861 4 C -0.218 4.218 5 C -0.089 4.089 6 C -0.163 4.163 7 C -0.004 4.004 8 C -0.105 4.105 9 C -0.182 4.182 10 C -0.165 4.165 11 C -0.047 4.047 12 C 0.014 3.986 13 C -0.293 4.293 14 C 0.120 3.880 15 N -0.483 5.483 16 C 0.257 3.743 17 C -0.435 4.435 18 H 0.081 0.919 19 C 0.071 3.929 20 N -0.719 5.719 21 Si 0.904 3.096 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.240 4.240 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.271 0.729 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.546 12.265 -2.090 14.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.209 6.209 3 C 0.093 3.907 4 C -0.237 4.237 5 C -0.107 4.107 6 C -0.181 4.181 7 C -0.005 4.005 8 C -0.123 4.123 9 C -0.219 4.219 10 C -0.202 4.202 11 C -0.047 4.047 12 C 0.007 3.993 13 C -0.317 4.317 14 C -0.045 4.045 15 N -0.196 5.196 16 C 0.131 3.869 17 C -0.466 4.466 18 H 0.099 0.901 19 C -0.154 4.154 20 N -0.340 5.340 21 Si 0.728 3.272 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.263 4.263 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.816 11.123 -2.142 12.733 hybrid contribution -0.925 0.410 0.554 1.153 sum -6.741 11.533 -1.588 13.452 Atomic orbital electron populations 1.23020 0.79391 1.03741 1.00627 1.86267 1.20276 1.26283 1.88042 1.19038 0.91508 0.84249 0.95889 1.21080 0.99566 0.92352 1.10722 1.20767 0.94337 0.96587 0.99053 1.20789 0.93549 0.97770 1.05987 1.18948 0.93349 0.91225 0.96930 1.20995 0.91132 0.96528 1.03606 1.23074 1.02703 0.96006 1.00088 1.22950 1.02256 1.03534 0.91428 1.18194 0.89467 0.93603 1.03477 1.18253 0.94778 0.91481 0.94758 1.21239 1.08106 1.02387 0.99932 1.22399 0.95293 0.90408 0.96400 1.68711 1.21372 1.29405 1.00127 1.18515 0.87523 0.89584 0.91234 1.19571 1.22156 1.03220 1.01690 0.90074 1.26030 0.94335 0.98480 0.96549 1.70138 1.15956 1.21817 1.26130 0.86389 0.78343 0.80422 0.81999 1.19481 1.20173 1.18619 1.21725 1.07192 0.98384 0.98971 0.93039 0.93171 0.88408 0.85866 0.86320 0.86140 0.86118 0.88712 0.88664 0.88504 0.88938 0.88966 0.86587 0.91784 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.30 -5.53 9.73 -19.17 -0.19 -5.72 16 3 C 0.14 2.54 6.67 -38.85 -0.26 2.28 16 4 C -0.22 -3.20 9.03 -39.47 -0.36 -3.56 16 5 C -0.09 -1.20 10.03 -39.55 -0.40 -1.59 16 6 C -0.16 -2.34 9.28 -39.61 -0.37 -2.71 16 7 C 0.00 -0.07 5.63 -104.31 -0.59 -0.66 16 8 C -0.10 -1.69 5.02 -91.76 -0.46 -2.15 16 9 C -0.18 -2.28 9.86 -26.69 -0.26 -2.54 16 10 C -0.16 -2.19 10.16 -26.69 -0.27 -2.46 16 11 C -0.05 -0.93 5.38 -104.76 -0.56 -1.49 16 12 C 0.01 0.31 3.88 -104.65 -0.41 -0.09 16 13 C -0.29 -6.74 8.94 -38.81 -0.35 -7.09 16 14 C 0.12 2.97 11.17 -17.61 -0.20 2.77 16 15 N -0.48 -13.60 7.85 -11.21 -0.09 -13.68 16 16 C 0.26 7.20 6.55 -85.02 -0.56 6.64 16 17 C -0.43 -11.96 9.14 -37.70 -0.34 -12.31 16 18 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 19 C 0.07 1.84 5.50 -17.35 -0.10 1.75 16 20 N -0.72 -19.56 11.46 55.55 0.64 -18.92 16 21 Si 0.90 19.02 29.56 -169.99 -5.02 13.99 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 25 C -0.24 -6.13 9.32 -38.33 -0.36 -6.49 16 26 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 27 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.12 1.46 6.30 -52.49 -0.33 1.13 16 30 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.12 1.43 6.02 -52.48 -0.32 1.12 16 32 H 0.12 2.29 7.12 -51.93 -0.37 1.92 16 33 H 0.09 1.05 6.19 -51.93 -0.32 0.73 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 38 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 39 H 0.27 6.68 8.29 -40.82 -0.34 6.34 16 40 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -31.07 337.19 -9.48 -40.55 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.06 Total: 7.06 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -4.84 Total: -28.37 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.55 Total: -32.61 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.19 Total: -5.72 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.07 -9.48 -40.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244256928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.381 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds