Wall clock time and date at job start Tue Mar 31 2020 06:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35819 * 117.00051 * 2 1 4 4 C 1.38605 * 120.11993 * 359.97438 * 3 2 1 5 5 C 1.38161 * 120.06236 * 180.02562 * 4 3 2 6 6 C 1.38413 * 120.30990 * 359.97438 * 5 4 3 7 7 C 1.37973 * 120.24327 * 359.74286 * 6 5 4 8 8 C 1.50703 * 120.03651 * 180.26200 * 7 6 5 9 9 C 1.53009 * 117.49756 * 8.99689 * 8 7 6 10 10 C 1.53002 * 117.49633 * 300.34088 * 8 7 6 11 11 C 1.39335 * 119.93360 * 0.51299 * 7 6 5 12 12 C 1.48291 * 120.15486 * 179.76488 * 11 7 6 13 13 C 1.40074 * 120.82757 * 294.72840 * 12 11 7 14 14 C 1.38475 * 119.41962 * 179.97438 * 13 12 11 15 15 N 1.31493 * 121.15120 * 359.97438 * 14 13 12 16 16 C 1.33658 * 121.80312 * 0.02562 * 15 14 13 17 17 C 1.41435 * 119.77507 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99734 * 180.02562 * 17 16 15 19 19 C 1.40025 * 119.99858 * 359.97438 * 17 16 15 20 20 N 1.30736 * 120.00556 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99799 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46861 * 90.00223 * 21 19 17 23 23 H 1.48500 * 109.46977 * 210.00243 * 21 19 17 24 24 H 1.48499 * 109.47212 * 330.00464 * 21 19 17 25 25 C 1.39370 * 120.82016 * 114.67542 * 12 11 7 26 26 H 1.08998 * 109.47285 * 300.00136 * 1 2 3 27 27 H 1.09003 * 109.47012 * 59.99983 * 1 2 3 28 28 H 1.08997 * 109.47211 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.97268 * 359.97438 * 4 3 2 30 30 H 1.08005 * 119.84476 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.87542 * 180.02562 * 6 5 4 32 32 H 1.08998 * 115.55491 * 154.67109 * 8 7 6 33 33 H 1.09002 * 117.49345 * 0.02562 * 9 8 7 34 34 H 1.08995 * 117.49594 * 145.02111 * 9 8 7 35 35 H 1.09000 * 117.50092 * 214.97585 * 10 8 7 36 36 H 1.09000 * 117.50123 * 359.97438 * 10 8 7 37 37 H 1.08004 * 120.29009 * 0.24577 * 13 12 11 38 38 H 1.08002 * 119.42151 * 180.02562 * 14 13 12 39 39 H 0.96996 * 120.00183 * 179.97438 * 20 19 17 40 40 H 1.07991 * 120.58771 * 0.04859 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2931 2.3742 -0.0005 5 6 1.9216 3.6046 -0.0011 6 6 3.3035 3.6831 -0.0005 7 6 4.0649 2.5325 0.0059 8 6 5.5692 2.6234 0.0124 9 6 6.1925 4.0047 0.2238 10 6 6.2382 3.3473 -1.1578 11 6 3.4417 1.2863 0.0010 12 6 4.2553 0.0465 0.0026 13 6 5.0747 -0.2757 -1.0868 14 6 5.8226 -1.4407 -1.0542 15 7 5.7774 -2.2493 -0.0183 16 6 5.0123 -1.9884 1.0461 17 6 4.9967 -2.8879 2.1374 18 1 4.3796 -2.6808 2.9991 19 6 5.7808 -4.0475 2.1001 20 7 6.5275 -4.2985 1.0568 21 14 5.7607 -5.2353 3.5418 22 1 4.6948 -6.2481 3.3339 23 1 7.0772 -5.9152 3.6413 24 1 5.4942 -4.4866 4.7963 25 6 4.2245 -0.8264 1.0887 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2146 2.3194 -0.0014 30 1 1.3319 4.5094 -0.0019 31 1 3.7875 4.6486 -0.0005 32 1 6.0903 1.7657 0.4377 33 1 5.5145 4.8475 0.3586 34 1 7.1238 4.0555 0.7879 35 1 7.1996 2.9661 -1.5021 36 1 5.5904 3.7574 -1.9326 37 1 5.1261 0.3808 -1.9428 38 1 6.4547 -1.6890 -1.8940 39 1 7.0709 -5.1016 1.0311 40 1 3.6056 -0.6133 1.9476 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244256928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:55 Heat of formation + Delta-G solvation = 30.263105 kcal Electronic energy + Delta-G solvation = -23095.708379 eV Core-core repulsion = 19840.717593 eV Total energy + Delta-G solvation = -3254.990786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40160 -39.79748 -39.18807 -36.94094 -35.57627 -33.88519 -31.88810 -30.81749 -30.25215 -28.14472 -27.59788 -24.76813 -24.33263 -23.24030 -23.11063 -22.11176 -21.07675 -19.34454 -18.41674 -17.49163 -17.32568 -16.80356 -16.61811 -16.32322 -16.09101 -15.88674 -15.52895 -15.24212 -14.55666 -14.37003 -14.03427 -13.98027 -13.61120 -13.49500 -12.94433 -12.87764 -12.75451 -12.65160 -12.52473 -12.27579 -12.22221 -12.08598 -11.75543 -11.64579 -11.37421 -11.26311 -11.19527 -10.07992 -9.56561 -9.48899 -9.34293 -8.99881 -8.28044 -6.50857 0.25551 0.48087 0.91971 1.17881 1.38215 1.51522 1.54132 2.22708 2.43022 2.66736 2.85213 3.17154 3.68309 3.79894 3.91648 3.98354 4.07172 4.16426 4.20543 4.23804 4.26545 4.37503 4.45474 4.45822 4.67945 4.69735 4.78181 4.83941 4.87976 4.94918 4.98608 5.08372 5.14574 5.21580 5.27023 5.39625 5.44552 5.52035 5.65203 5.68600 5.89274 5.97204 6.14333 6.28392 6.56991 6.74052 6.97801 8.20064 8.47003 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.005009 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.766445 B = 5588.239059 C = 6650.299062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.122 3.878 4 C -0.217 4.217 5 C -0.072 4.072 6 C -0.162 4.162 7 C -0.006 4.006 8 C -0.141 4.141 9 C -0.155 4.155 10 C -0.155 4.155 11 C -0.101 4.101 12 C 0.033 3.967 13 C -0.286 4.286 14 C 0.103 3.897 15 N -0.518 5.518 16 C 0.227 3.773 17 C -0.474 4.474 18 H 0.081 0.919 19 C 0.025 3.975 20 N -0.758 5.758 21 Si 0.987 3.013 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.257 1.257 25 C -0.264 4.264 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.137 0.863 39 H 0.279 0.721 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.977 15.157 -2.139 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.077 3.923 4 C -0.235 4.235 5 C -0.090 4.090 6 C -0.180 4.180 7 C -0.007 4.007 8 C -0.159 4.159 9 C -0.191 4.191 10 C -0.191 4.191 11 C -0.102 4.102 12 C 0.026 3.974 13 C -0.309 4.309 14 C -0.061 4.061 15 N -0.232 5.232 16 C 0.102 3.898 17 C -0.505 4.505 18 H 0.099 0.901 19 C -0.196 4.196 20 N -0.381 5.381 21 Si 0.807 3.193 22 H -0.186 1.186 23 H -0.189 1.189 24 H -0.181 1.181 25 C -0.287 4.287 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.123 0.877 29 H 0.172 0.828 30 H 0.182 0.818 31 H 0.171 0.829 32 H 0.095 0.905 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.155 0.845 39 H 0.089 0.911 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.256 14.037 -2.211 15.955 hybrid contribution -0.552 -0.300 0.463 0.781 sum -7.808 13.737 -1.748 15.897 Atomic orbital electron populations 1.23313 0.76749 1.04967 1.02468 1.86198 1.23290 1.27485 1.88350 1.19275 0.91206 0.85350 0.96491 1.21433 1.00972 0.91491 1.09599 1.21329 0.94297 0.97629 0.95704 1.21142 0.94106 0.97827 1.04910 1.19112 0.93849 0.91200 0.96496 1.20844 0.90953 0.97308 1.06813 1.23205 1.02790 0.94124 0.99024 1.23036 1.02013 1.02379 0.91718 1.18270 0.90413 0.93091 1.08393 1.18553 0.93578 0.92137 0.93117 1.21467 1.07167 1.01756 1.00489 1.22839 0.95941 0.90903 0.96411 1.68664 1.22530 1.30929 1.01044 1.18922 0.88306 0.90755 0.91802 1.19895 1.23781 1.04795 1.02072 0.90054 1.26972 0.93196 0.99757 0.99652 1.70233 1.16717 1.22785 1.28342 0.85157 0.78884 0.77547 0.77756 1.18630 1.18887 1.18081 1.21720 1.07871 0.99087 0.99993 0.91267 0.91016 0.87742 0.82832 0.81828 0.82944 0.90510 0.86207 0.87896 0.88410 0.87546 0.86893 0.84540 0.91085 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.58 16 2 O -0.34 -12.90 9.73 -91.52 -0.89 -13.79 16 3 C 0.12 4.41 6.67 22.74 0.15 4.57 16 4 C -0.22 -5.67 9.03 22.34 0.20 -5.46 16 5 C -0.07 -1.58 10.03 22.29 0.22 -1.36 16 6 C -0.16 -4.03 9.28 22.25 0.21 -3.82 16 7 C -0.01 -0.21 5.63 -19.66 -0.11 -0.32 16 8 C -0.14 -4.50 5.02 -11.54 -0.06 -4.56 16 9 C -0.15 -3.47 9.86 30.62 0.30 -3.17 16 10 C -0.15 -3.81 10.16 30.62 0.31 -3.49 16 11 C -0.10 -4.08 5.38 -19.96 -0.11 -4.19 16 12 C 0.03 1.59 3.88 -19.88 -0.08 1.51 16 13 C -0.29 -13.70 8.94 22.77 0.20 -13.49 16 14 C 0.10 5.34 11.17 84.80 0.95 6.29 16 15 N -0.52 -30.96 7.85 -189.38 -1.49 -32.44 16 16 C 0.23 13.67 6.55 40.19 0.26 13.93 16 17 C -0.47 -27.73 9.14 23.49 0.21 -27.51 16 18 H 0.08 4.52 7.85 -2.91 -0.02 4.50 16 19 C 0.03 1.37 5.50 85.29 0.47 1.84 16 20 N -0.76 -43.12 11.46 21.84 0.25 -42.87 16 21 Si 0.99 40.21 29.56 68.60 2.03 42.23 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 25 C -0.26 -14.53 9.32 23.08 0.22 -14.31 16 26 H 0.07 1.40 7.66 -2.39 -0.02 1.38 16 27 H 0.07 1.40 7.66 -2.39 -0.02 1.38 16 28 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.15 2.98 6.30 -2.91 -0.02 2.97 16 30 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.15 2.77 6.02 -2.91 -0.02 2.75 16 32 H 0.08 3.10 7.12 -2.39 -0.02 3.09 16 33 H 0.12 2.08 6.19 -2.39 -0.01 2.07 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.10 2.35 8.14 -2.39 -0.02 2.34 16 36 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 38 H 0.14 6.29 8.06 -2.91 -0.02 6.27 16 39 H 0.28 14.23 8.29 -92.71 -0.77 13.46 16 40 H 0.09 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -74.08 337.19 5.42 -68.66 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 1.05 Total: 30.19 kcal Atomic # 6 Polarization: -56.46 SS G_CDS: 4.47 Total: -51.99 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.24 Total: -75.31 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.89 Total: -13.79 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Total: -74.08 5.42 -68.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244256928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.924 kcal (2) G-P(sol) polarization free energy of solvation -74.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds