Wall clock time and date at job start Tue Mar 31 2020 06:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00448 * 2 1 4 4 C 1.38468 * 119.97865 * 0.25247 * 3 2 1 5 5 C 1.39515 * 119.79164 * 180.27287 * 4 3 2 6 6 C 1.47967 * 120.11535 * 179.74205 * 5 4 3 7 7 C 1.39894 * 119.44782 * 184.72820 * 6 5 4 8 8 C 1.36613 * 119.46466 * 179.73308 * 7 6 5 9 9 C 1.41305 * 118.41284 * 0.24537 * 8 7 6 10 10 C 1.41052 * 120.54931 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99679 * 203.70240 * 10 9 8 12 12 C 1.40027 * 120.00549 * 23.70635 * 10 9 8 13 13 N 1.30790 * 119.99681 * 17.62597 * 12 10 9 14 14 Si 1.86799 * 120.00308 * 197.62733 * 12 10 9 15 15 H 1.48493 * 109.47070 * 89.99986 * 14 12 10 16 16 H 1.48505 * 109.46739 * 210.00143 * 14 12 10 17 17 H 1.48495 * 109.46815 * 329.99829 * 14 12 10 18 18 C 1.40938 * 118.89135 * 0.02562 * 9 8 7 19 19 N 1.31264 * 120.40673 * 0.02562 * 18 9 8 20 20 C 1.39650 * 119.76623 * 359.47361 * 5 4 3 21 21 C 1.37943 * 119.96327 * 0.27293 * 20 5 4 22 22 C 1.38323 * 120.20572 * 359.97438 * 21 20 5 23 23 C 1.50698 * 119.88324 * 180.02562 * 22 21 20 24 24 C 1.53008 * 117.49805 * 8.62287 * 23 22 21 25 25 C 1.53004 * 59.99969 * 252.50690 * 24 23 22 26 26 H 1.09005 * 109.47273 * 300.00348 * 1 2 3 27 27 H 1.09005 * 109.47096 * 59.99767 * 1 2 3 28 28 H 1.09001 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.11031 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.26898 * 359.97438 * 7 6 5 31 31 H 1.07998 * 120.79119 * 180.28077 * 8 7 6 32 32 H 0.97003 * 120.00126 * 179.97438 * 13 12 10 33 33 H 1.08001 * 119.80122 * 179.97438 * 18 9 8 34 34 H 1.07996 * 120.02284 * 180.24585 * 20 5 4 35 35 H 1.08002 * 119.89997 * 179.97438 * 21 20 5 36 36 H 1.09000 * 115.55026 * 154.32808 * 23 22 21 37 37 H 1.09004 * 117.49670 * 359.97438 * 24 23 22 38 38 H 1.09001 * 117.49808 * 145.02152 * 24 23 22 39 39 H 1.08999 * 117.50138 * 252.51043 * 25 24 23 40 40 H 1.09004 * 117.49463 * 107.48363 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3719 0.0053 5 6 1.9291 3.6129 -0.0005 6 6 1.1298 4.8581 -0.0007 7 6 1.7796 6.0924 -0.1069 8 6 1.0416 7.2420 -0.1126 9 6 -0.3636 7.1395 -0.0047 10 6 -1.1690 8.2974 -0.0053 11 1 -2.1503 8.2729 0.4451 12 6 -0.6965 9.4788 -0.5901 13 7 0.3107 9.4385 -1.4234 14 14 -1.5047 11.1122 -0.1800 15 1 -0.8291 11.7173 0.9958 16 1 -1.3884 12.0279 -1.3433 17 1 -2.9391 10.8898 0.1334 18 6 -0.9466 5.8611 0.1048 19 7 -0.1941 4.7856 0.1066 20 6 3.3242 3.6756 -0.0004 21 6 4.0661 2.5128 -0.0004 22 6 3.4327 1.2831 0.0002 23 6 4.2504 0.0173 0.0008 24 6 5.7609 0.1521 0.2043 25 6 5.2039 -0.2086 -1.1743 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2130 2.3171 0.0098 30 1 2.8557 6.1359 -0.1877 31 1 1.5208 8.2061 -0.1982 32 1 0.6379 10.2568 -1.8288 33 1 -2.0192 5.7657 0.1885 34 1 3.8219 4.6340 -0.0009 35 1 5.1450 2.5625 -0.0008 36 1 3.7610 -0.8584 0.4272 37 1 6.1631 1.1564 0.3373 38 1 6.2654 -0.6349 0.7648 39 1 5.3419 -1.2328 -1.5208 40 1 5.2396 0.5586 -1.9479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244885193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:33 Heat of formation + Delta-G solvation = 29.652995 kcal Electronic energy + Delta-G solvation = -22222.751652 eV Core-core repulsion = 18967.734410 eV Total energy + Delta-G solvation = -3255.017242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.99369 -38.46450 -37.59541 -36.12661 -34.27461 -31.38001 -30.89341 -29.63579 -29.18382 -27.02464 -25.70192 -23.53467 -22.54479 -22.15409 -21.30050 -20.71590 -19.85736 -17.66826 -17.53335 -16.29856 -15.64492 -15.50781 -15.42956 -15.03989 -14.55649 -14.32765 -14.05686 -13.74539 -13.19749 -13.00115 -12.82483 -12.33823 -12.19492 -11.81880 -11.80221 -11.70585 -11.45197 -11.41273 -11.26110 -10.93772 -10.83034 -10.72984 -10.55354 -10.37560 -10.16639 -9.93654 -9.56231 -8.54600 -8.40822 -8.16032 -7.88271 -7.27320 -7.03422 -4.62913 1.48097 1.92960 2.60405 2.88222 2.91660 2.93792 3.09320 3.58300 3.68099 3.90458 4.26324 4.59162 4.74220 4.99490 5.14800 5.20144 5.26517 5.39738 5.41380 5.54663 5.57374 5.61803 5.68585 5.75897 5.80153 5.90751 6.00985 6.10467 6.16022 6.31843 6.36811 6.57557 6.59051 6.68814 6.81549 6.90265 6.93116 7.09415 7.18426 7.27562 7.59069 7.68978 7.78158 7.83937 8.24534 8.43573 8.54015 9.48450 9.80300 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.028628 B = 0.003199 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.827822 B = 8751.678312 C = 9562.176339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.131 3.869 4 C -0.198 4.198 5 C 0.057 3.943 6 C -0.014 4.014 7 C -0.117 4.117 8 C -0.146 4.146 9 C 0.070 3.930 10 C -0.431 4.431 11 H 0.088 0.912 12 C 0.071 3.929 13 N -0.773 5.773 14 Si 0.917 3.083 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.258 1.258 18 C -0.018 4.018 19 N -0.447 5.447 20 C -0.166 4.166 21 C -0.081 4.081 22 C -0.117 4.117 23 C -0.091 4.091 24 C -0.184 4.184 25 C -0.176 4.176 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.288 0.712 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.258 -10.133 1.324 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.087 3.913 4 C -0.218 4.218 5 C 0.056 3.944 6 C -0.147 4.147 7 C -0.137 4.137 8 C -0.171 4.171 9 C 0.065 3.935 10 C -0.460 4.460 11 H 0.106 0.894 12 C -0.150 4.150 13 N -0.396 5.396 14 Si 0.741 3.259 15 H -0.189 1.189 16 H -0.199 1.199 17 H -0.182 1.182 18 C -0.183 4.183 19 N -0.154 5.154 20 C -0.185 4.185 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.109 4.109 24 C -0.221 4.221 25 C -0.213 4.213 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.154 0.846 30 H 0.121 0.879 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.117 -10.984 1.221 12.179 hybrid contribution -0.198 1.906 -0.058 1.918 sum 4.919 -9.077 1.163 10.390 Atomic orbital electron populations 1.22990 0.78839 1.03010 1.01841 1.85979 1.20973 1.27305 1.89142 1.18637 0.91254 0.83985 0.97443 1.21307 1.00554 0.90940 1.08963 1.18468 0.91849 0.91583 0.92539 1.18754 0.89562 0.90588 1.15803 1.21318 0.98847 0.93313 1.00252 1.21339 0.93775 0.97539 1.04460 1.18625 0.92899 0.93464 0.88521 1.19722 1.02500 0.93648 1.30099 0.89396 1.26116 0.94460 1.01859 0.92547 1.69782 1.20758 1.31081 1.17982 0.86144 0.80755 0.79825 0.79213 1.18896 1.19947 1.18180 1.22445 0.97726 0.87668 1.10494 1.66896 1.05597 1.33908 1.09006 1.21063 0.93109 0.98050 1.06288 1.20602 0.99109 0.90951 0.99218 1.18253 0.89726 0.93617 1.10259 1.20705 0.90233 0.97209 1.02764 1.23052 0.96228 1.02814 0.99960 1.23001 1.04218 1.02250 0.91809 0.92617 0.92642 0.88896 0.84639 0.87933 0.85491 0.90086 0.85320 0.86006 0.86039 0.87241 0.88519 0.88946 0.89031 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.00 9.66 -19.43 -0.19 -5.19 16 3 C 0.13 2.29 6.65 -39.27 -0.26 2.03 16 4 C -0.20 -3.82 8.56 -39.02 -0.33 -4.16 16 5 C 0.06 1.17 5.87 -104.91 -0.62 0.55 16 6 C -0.01 -0.32 6.73 -82.75 -0.56 -0.88 16 7 C -0.12 -2.71 9.37 -39.55 -0.37 -3.08 16 8 C -0.15 -3.63 8.75 -39.00 -0.34 -3.97 16 9 C 0.07 1.77 5.59 -106.64 -0.60 1.17 16 10 C -0.43 -10.50 9.06 -37.85 -0.34 -10.84 16 11 H 0.09 2.01 7.91 -52.48 -0.41 1.60 16 12 C 0.07 1.64 5.17 -17.32 -0.09 1.55 16 13 N -0.77 -18.38 10.92 55.55 0.61 -17.77 16 14 Si 0.92 16.99 29.60 -169.99 -5.03 11.96 16 15 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 16 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 17 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 18 C -0.02 -0.43 10.97 -16.77 -0.18 -0.61 16 19 N -0.45 -10.85 9.40 -9.10 -0.09 -10.93 16 20 C -0.17 -2.98 9.41 -39.16 -0.37 -3.35 16 21 C -0.08 -1.28 9.28 -39.66 -0.37 -1.64 16 22 C -0.12 -1.90 5.63 -104.36 -0.59 -2.48 16 23 C -0.09 -1.22 5.74 -91.77 -0.53 -1.74 16 24 C -0.18 -2.01 9.86 -26.72 -0.26 -2.27 16 25 C -0.18 -2.01 10.16 -26.73 -0.27 -2.28 16 26 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 27 H 0.05 0.70 7.67 -51.93 -0.40 0.30 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.14 2.62 5.76 -52.49 -0.30 2.32 16 30 H 0.10 2.09 6.18 -52.49 -0.32 1.76 16 31 H 0.13 3.17 6.19 -52.49 -0.32 2.85 16 32 H 0.29 6.15 8.30 -40.82 -0.34 5.82 16 33 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 34 H 0.12 2.04 6.18 -52.49 -0.32 1.71 16 35 H 0.12 1.58 6.00 -52.49 -0.31 1.27 16 36 H 0.11 1.46 7.75 -51.93 -0.40 1.05 16 37 H 0.10 1.02 6.16 -51.93 -0.32 0.70 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -27.24 333.88 -9.53 -36.77 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -4.77 Total: 10.81 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -5.09 Total: -30.67 kcal Atomic # 7 Polarization: -29.22 SS G_CDS: 0.52 Total: -28.70 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.19 Total: -5.19 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.24 -9.53 -36.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244885193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.420 kcal (2) G-P(sol) polarization free energy of solvation -27.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds