Wall clock time and date at job start Tue Mar 31 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 117.00448 * 2 1 4 4 C 1.38468 * 119.97865 * 0.25247 * 3 2 1 5 5 C 1.39515 * 119.79164 * 180.27287 * 4 3 2 6 6 C 1.47967 * 120.11535 * 179.74205 * 5 4 3 7 7 C 1.39894 * 119.44782 * 184.72820 * 6 5 4 8 8 C 1.36613 * 119.46466 * 179.73308 * 7 6 5 9 9 C 1.41305 * 118.41284 * 0.24537 * 8 7 6 10 10 C 1.41052 * 120.54931 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99679 * 203.70240 * 10 9 8 12 12 C 1.40027 * 120.00549 * 23.70635 * 10 9 8 13 13 N 1.30790 * 119.99681 * 17.62597 * 12 10 9 14 14 Si 1.86799 * 120.00308 * 197.62733 * 12 10 9 15 15 H 1.48493 * 109.47070 * 89.99986 * 14 12 10 16 16 H 1.48505 * 109.46739 * 210.00143 * 14 12 10 17 17 H 1.48495 * 109.46815 * 329.99829 * 14 12 10 18 18 C 1.40938 * 118.89135 * 0.02562 * 9 8 7 19 19 N 1.31264 * 120.40673 * 0.02562 * 18 9 8 20 20 C 1.39650 * 119.76623 * 359.47361 * 5 4 3 21 21 C 1.37943 * 119.96327 * 0.27293 * 20 5 4 22 22 C 1.38323 * 120.20572 * 359.97438 * 21 20 5 23 23 C 1.50698 * 119.88324 * 180.02562 * 22 21 20 24 24 C 1.53008 * 117.49805 * 8.62287 * 23 22 21 25 25 C 1.53004 * 59.99969 * 252.50690 * 24 23 22 26 26 H 1.09005 * 109.47273 * 300.00348 * 1 2 3 27 27 H 1.09005 * 109.47096 * 59.99767 * 1 2 3 28 28 H 1.09001 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.11031 * 0.02562 * 4 3 2 30 30 H 1.08002 * 120.26898 * 359.97438 * 7 6 5 31 31 H 1.07998 * 120.79119 * 180.28077 * 8 7 6 32 32 H 0.97003 * 120.00126 * 179.97438 * 13 12 10 33 33 H 1.08001 * 119.80122 * 179.97438 * 18 9 8 34 34 H 1.07996 * 120.02284 * 180.24585 * 20 5 4 35 35 H 1.08002 * 119.89997 * 179.97438 * 21 20 5 36 36 H 1.09000 * 115.55026 * 154.32808 * 23 22 21 37 37 H 1.09004 * 117.49670 * 359.97438 * 24 23 22 38 38 H 1.09001 * 117.49808 * 145.02152 * 24 23 22 39 39 H 1.08999 * 117.50138 * 252.51043 * 25 24 23 40 40 H 1.09004 * 117.49463 * 107.48363 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3719 0.0053 5 6 1.9291 3.6129 -0.0005 6 6 1.1298 4.8581 -0.0007 7 6 1.7796 6.0924 -0.1069 8 6 1.0416 7.2420 -0.1126 9 6 -0.3636 7.1395 -0.0047 10 6 -1.1690 8.2974 -0.0053 11 1 -2.1503 8.2729 0.4451 12 6 -0.6965 9.4788 -0.5901 13 7 0.3107 9.4385 -1.4234 14 14 -1.5047 11.1122 -0.1800 15 1 -0.8291 11.7173 0.9958 16 1 -1.3884 12.0279 -1.3433 17 1 -2.9391 10.8898 0.1334 18 6 -0.9466 5.8611 0.1048 19 7 -0.1941 4.7856 0.1066 20 6 3.3242 3.6756 -0.0004 21 6 4.0661 2.5128 -0.0004 22 6 3.4327 1.2831 0.0002 23 6 4.2504 0.0173 0.0008 24 6 5.7609 0.1521 0.2043 25 6 5.2039 -0.2086 -1.1743 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2130 2.3171 0.0098 30 1 2.8557 6.1359 -0.1877 31 1 1.5208 8.2061 -0.1982 32 1 0.6379 10.2568 -1.8288 33 1 -2.0192 5.7657 0.1885 34 1 3.8219 4.6340 -0.0009 35 1 5.1450 2.5625 -0.0008 36 1 3.7610 -0.8584 0.4272 37 1 6.1631 1.1564 0.3373 38 1 6.2654 -0.6349 0.7648 39 1 5.3419 -1.2328 -1.5208 40 1 5.2396 0.5586 -1.9479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244885193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:32 Heat of formation + Delta-G solvation = 17.451708 kcal Electronic energy + Delta-G solvation = -22223.280740 eV Core-core repulsion = 18967.734410 eV Total energy + Delta-G solvation = -3255.546330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32322 -40.19290 -38.72405 -37.40230 -35.99814 -32.94476 -32.70383 -31.04923 -30.71688 -28.26684 -27.29864 -24.98200 -24.01654 -23.25393 -22.81361 -22.22163 -21.12460 -19.39116 -18.98603 -17.64725 -17.18851 -16.82878 -16.63400 -16.56270 -16.10925 -15.62377 -15.47062 -15.08119 -14.66732 -14.58296 -14.27167 -13.82068 -13.61307 -13.58041 -13.23363 -13.14251 -12.83672 -12.78776 -12.43477 -12.28293 -12.11706 -11.99506 -11.79631 -11.66818 -11.56719 -11.23959 -11.14136 -10.30174 -10.06976 -9.97220 -9.36599 -8.88241 -8.68623 -6.47268 -0.02889 0.55084 0.92597 1.10497 1.37955 1.52270 1.54478 2.13680 2.41241 2.52295 2.87708 3.22968 3.62079 3.72354 3.78819 3.91059 4.07266 4.20705 4.23054 4.31644 4.36340 4.37920 4.46887 4.54109 4.67101 4.70653 4.72570 4.82070 4.87390 4.93879 5.03246 5.04830 5.14177 5.23871 5.27599 5.33595 5.40127 5.62029 5.67476 5.75968 5.88126 5.92019 6.00868 6.40568 6.47915 6.62595 6.69831 7.62987 8.11327 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.028628 B = 0.003199 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.827822 B = 8751.678312 C = 9562.176339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.322 6.322 3 C 0.122 3.878 4 C -0.207 4.207 5 C 0.019 3.981 6 C -0.018 4.018 7 C -0.123 4.123 8 C -0.163 4.163 9 C 0.043 3.957 10 C -0.461 4.461 11 H 0.092 0.908 12 C 0.034 3.966 13 N -0.804 5.804 14 Si 0.992 3.008 15 H -0.260 1.260 16 H -0.266 1.266 17 H -0.254 1.254 18 C -0.038 4.038 19 N -0.460 5.460 20 C -0.166 4.166 21 C -0.076 4.076 22 C -0.108 4.108 23 C -0.118 4.118 24 C -0.166 4.166 25 C -0.168 4.168 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.297 0.703 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.156 0.844 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.023 -11.190 1.431 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.236 6.236 3 C 0.077 3.923 4 C -0.226 4.226 5 C 0.018 3.982 6 C -0.153 4.153 7 C -0.143 4.143 8 C -0.188 4.188 9 C 0.039 3.961 10 C -0.489 4.489 11 H 0.110 0.890 12 C -0.184 4.184 13 N -0.428 5.428 14 Si 0.812 3.188 15 H -0.184 1.184 16 H -0.190 1.190 17 H -0.177 1.177 18 C -0.202 4.202 19 N -0.167 5.167 20 C -0.185 4.185 21 C -0.094 4.094 22 C -0.109 4.109 23 C -0.136 4.136 24 C -0.203 4.203 25 C -0.205 4.205 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.147 0.853 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.138 0.862 32 H 0.108 0.892 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.174 0.826 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.869 -12.061 1.326 13.943 hybrid contribution -0.628 1.962 -0.113 2.063 sum 6.241 -10.099 1.212 11.933 Atomic orbital electron populations 1.23222 0.77332 1.05223 1.01357 1.85981 1.22483 1.26271 1.88879 1.18792 0.92038 0.83948 0.97488 1.21289 1.00346 0.91499 1.09497 1.18528 0.92961 0.90823 0.95851 1.19302 0.89583 0.92063 1.14338 1.21576 1.00145 0.92804 0.99750 1.21391 0.93983 0.97827 1.05628 1.18923 0.93526 0.94237 0.89452 1.19986 1.03029 0.94530 1.31398 0.88967 1.26987 0.94834 1.04936 0.91654 1.69813 1.21879 1.32550 1.18537 0.85030 0.79706 0.74971 0.79102 1.18430 1.18994 1.17729 1.22670 0.98424 0.87761 1.11388 1.66943 1.06301 1.33866 1.09599 1.21242 0.92090 0.99523 1.05630 1.20942 1.00670 0.89913 0.97849 1.18719 0.89598 0.95188 1.07417 1.20724 0.91513 0.95840 1.05498 1.23185 0.93732 1.03938 0.99397 1.23082 1.02461 1.03272 0.91663 0.93065 0.93222 0.85307 0.85711 0.85418 0.86175 0.89160 0.84304 0.85010 0.82646 0.87311 0.87861 0.86905 0.87285 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.81 113.37 1.11 1.68 16 2 O -0.32 -9.74 9.66 -92.44 -0.89 -10.64 16 3 C 0.12 4.18 6.65 22.47 0.15 4.33 16 4 C -0.21 -8.11 8.56 22.63 0.19 -7.91 16 5 C 0.02 0.81 5.87 -20.05 -0.12 0.69 16 6 C -0.02 -0.89 6.73 41.95 0.28 -0.61 16 7 C -0.12 -5.83 9.37 22.29 0.21 -5.63 16 8 C -0.16 -8.42 8.75 22.64 0.20 -8.22 16 9 C 0.04 2.29 5.59 -21.17 -0.12 2.17 16 10 C -0.46 -23.24 9.06 23.39 0.21 -23.03 16 11 H 0.09 4.37 7.91 -2.91 -0.02 4.35 16 12 C 0.03 1.59 5.17 85.28 0.44 2.04 16 13 N -0.80 -38.99 10.92 21.84 0.24 -38.75 16 14 Si 0.99 34.75 29.60 68.60 2.03 36.78 16 15 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 16 H -0.27 -8.83 7.11 99.48 0.71 -8.13 16 17 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 18 C -0.04 -1.95 10.97 85.44 0.94 -1.01 16 19 N -0.46 -23.27 9.40 -182.72 -1.72 -24.98 16 20 C -0.17 -5.79 9.41 22.54 0.21 -5.58 16 21 C -0.08 -2.22 9.28 22.22 0.21 -2.01 16 22 C -0.11 -3.27 5.63 -19.70 -0.11 -3.38 16 23 C -0.12 -2.80 5.74 -11.54 -0.07 -2.86 16 24 C -0.17 -2.92 9.86 30.60 0.30 -2.62 16 25 C -0.17 -3.22 10.16 30.60 0.31 -2.91 16 26 H 0.05 1.29 7.65 -2.38 -0.02 1.27 16 27 H 0.05 1.26 7.67 -2.38 -0.02 1.24 16 28 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.13 5.04 5.76 -2.91 -0.02 5.02 16 30 H 0.13 5.21 6.18 -2.91 -0.02 5.20 16 31 H 0.12 6.24 6.19 -2.91 -0.02 6.23 16 32 H 0.30 12.82 8.30 -92.71 -0.77 12.05 16 33 H 0.14 6.52 8.06 -2.91 -0.02 6.50 16 34 H 0.13 4.23 6.18 -2.91 -0.02 4.21 16 35 H 0.16 3.43 6.00 -2.91 -0.02 3.41 16 36 H 0.11 2.62 7.75 -2.39 -0.02 2.60 16 37 H 0.10 1.70 6.16 -2.39 -0.01 1.68 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -60.79 333.88 5.08 -55.71 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: 1.07 Total: 36.74 kcal Atomic # 6 Polarization: -59.21 SS G_CDS: 4.35 Total: -54.86 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -1.48 Total: -63.73 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.89 Total: -10.64 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 2.03 Total: 36.78 kcal Total: -60.79 5.08 -55.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244885193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.165 kcal (2) G-P(sol) polarization free energy of solvation -60.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds