Wall clock time and date at job start Tue Mar 31 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35913 * 116.99777 * 2 1 4 4 C 1.38449 * 119.97863 * 0.28610 * 3 2 1 5 5 C 1.39567 * 119.78393 * 180.20540 * 4 3 2 6 6 C 1.47833 * 120.12135 * 179.78958 * 5 4 3 7 7 N 1.32577 * 119.98891 * 316.17526 * 6 5 4 8 8 C 1.31735 * 121.71848 * 180.02562 * 7 6 5 9 9 C 1.38872 * 121.50843 * 359.97438 * 8 7 6 10 10 C 1.36885 * 119.79948 * 0.02562 * 9 8 7 11 11 C 1.41131 * 118.39230 * 0.02562 * 10 9 8 12 12 C 1.40876 * 120.72137 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00492 * 150.54997 * 12 11 10 14 14 C 1.40076 * 119.99884 * 330.54793 * 12 11 10 15 15 N 1.30771 * 119.99975 * 163.13341 * 14 12 11 16 16 Si 1.86800 * 119.99907 * 343.13647 * 14 12 11 17 17 H 1.48495 * 109.47021 * 90.33209 * 16 14 12 18 18 H 1.48502 * 109.46652 * 210.32838 * 16 14 12 19 19 H 1.48489 * 109.47215 * 330.32779 * 16 14 12 20 20 C 1.39712 * 119.75359 * 359.51268 * 5 4 3 21 21 C 1.37925 * 119.96199 * 0.25260 * 20 5 4 22 22 C 1.38336 * 120.20674 * 359.97438 * 21 20 5 23 23 C 1.50697 * 119.87088 * 180.02562 * 22 21 20 24 24 C 1.52995 * 117.50121 * 8.62121 * 23 22 21 25 25 C 1.52994 * 117.50339 * 299.99605 * 23 22 21 26 26 H 1.09000 * 109.46813 * 299.99290 * 1 2 3 27 27 H 1.08995 * 109.47423 * 59.99443 * 1 2 3 28 28 H 1.08999 * 109.46964 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.10720 * 359.97192 * 4 3 2 30 30 H 1.08009 * 119.24918 * 180.02562 * 8 7 6 31 31 H 1.08003 * 120.10434 * 179.75175 * 9 8 7 32 32 H 1.07991 * 120.80873 * 179.97438 * 10 9 8 33 33 H 0.97000 * 120.00330 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.02074 * 180.27648 * 20 5 4 35 35 H 1.08000 * 119.90246 * 179.97438 * 21 20 5 36 36 H 1.08999 * 115.54543 * 154.33216 * 23 22 21 37 37 H 1.08997 * 117.50270 * 359.97438 * 24 23 22 38 38 H 1.09004 * 117.49502 * 145.02140 * 24 23 22 39 39 H 1.09000 * 117.50438 * 214.98485 * 25 23 22 40 40 H 1.09004 * 117.49603 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2915 2.3718 0.0060 5 6 1.9293 3.6133 0.0016 6 6 1.1309 4.8575 0.0033 7 7 0.0725 4.9667 -0.7876 8 6 -0.6626 6.0596 -0.8139 9 6 -0.3650 7.1539 -0.0123 10 6 0.7145 7.1081 0.8280 11 6 1.4983 5.9346 0.8503 12 6 2.6205 5.8346 1.6961 13 1 2.9248 4.8712 2.0780 14 6 3.3416 6.9846 2.0419 15 7 4.1592 6.9616 3.0622 16 14 3.1351 8.5512 1.0455 17 1 2.0433 9.3698 1.6310 18 1 4.4024 9.3249 1.0716 19 1 2.7958 8.2042 -0.3578 20 6 3.3250 3.6757 0.0016 21 6 4.0666 2.5128 0.0005 22 6 3.4328 1.2832 0.0001 23 6 4.2504 0.0173 -0.0005 24 6 5.7608 0.1518 0.2029 25 6 5.2036 -0.2076 -1.1759 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2129 2.3169 0.0102 30 1 -1.5168 6.1053 -1.4734 31 1 -0.9808 8.0401 -0.0551 32 1 0.9611 7.9497 1.4581 33 1 4.6583 7.7580 3.3018 34 1 3.8230 4.6341 0.0027 35 1 5.1454 2.5622 0.0001 36 1 3.7609 -0.8586 0.4252 37 1 6.1632 1.1559 0.3367 38 1 6.2653 -0.6358 0.7627 39 1 5.3415 -1.2315 -1.5233 40 1 5.2396 0.5603 -1.9487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244886369.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:36 Heat of formation + Delta-G solvation = 35.846311 kcal Electronic energy + Delta-G solvation = -23065.787780 eV Core-core repulsion = 19811.039100 eV Total energy + Delta-G solvation = -3254.748680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.91649 -38.68540 -37.48623 -35.96115 -34.15557 -31.68623 -31.43134 -29.56060 -29.00163 -26.84047 -25.73584 -23.83358 -22.32347 -21.99079 -21.42826 -20.78352 -19.76220 -17.64169 -17.60172 -16.20408 -15.93381 -15.41886 -15.28670 -15.03404 -14.67369 -14.39908 -13.86565 -13.72964 -13.36464 -13.14938 -12.61330 -12.55493 -12.22911 -12.16825 -11.84007 -11.69577 -11.46437 -11.31467 -11.00683 -10.76159 -10.69022 -10.57273 -10.36042 -10.33765 -10.02837 -9.88080 -9.61054 -8.66077 -8.33851 -8.22768 -7.76363 -7.29324 -7.18328 -4.68900 1.63162 2.11370 2.39890 2.62760 2.93165 3.04677 3.14121 3.67120 3.76029 4.02451 4.36307 4.51758 4.85179 5.11746 5.23618 5.25034 5.28199 5.38913 5.42563 5.48996 5.61505 5.71197 5.78503 5.85190 5.90469 6.00435 6.04989 6.13101 6.18952 6.22093 6.28629 6.44802 6.47872 6.58251 6.74173 6.83555 7.05162 7.16956 7.22084 7.33548 7.42666 7.53300 7.68972 7.89837 8.09215 8.31438 8.48879 9.29681 9.79337 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.005533 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.984347 B = 5059.663734 C = 6410.064488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.189 4.189 5 C 0.052 3.948 6 C 0.029 3.971 7 N -0.441 5.441 8 C -0.043 4.043 9 C -0.119 4.119 10 C -0.211 4.211 11 C 0.062 3.938 12 C -0.418 4.418 13 H 0.105 0.895 14 C 0.083 3.917 15 N -0.785 5.785 16 Si 0.911 3.089 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.246 1.246 20 C -0.119 4.119 21 C -0.092 4.092 22 C -0.103 4.103 23 C -0.092 4.092 24 C -0.183 4.183 25 C -0.175 4.175 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.290 0.710 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 -7.496 -4.144 8.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.208 4.208 5 C 0.051 3.949 6 C -0.111 4.111 7 N -0.148 5.148 8 C -0.201 4.201 9 C -0.139 4.139 10 C -0.237 4.237 11 C 0.057 3.943 12 C -0.446 4.446 13 H 0.123 0.877 14 C -0.139 4.139 15 N -0.407 5.407 16 Si 0.737 3.263 17 H -0.192 1.192 18 H -0.213 1.213 19 H -0.169 1.169 20 C -0.138 4.138 21 C -0.110 4.110 22 C -0.104 4.104 23 C -0.111 4.111 24 C -0.219 4.219 25 C -0.212 4.212 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.141 0.859 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.149 -8.281 -4.477 9.414 hybrid contribution -0.214 1.815 0.404 1.872 sum -0.363 -6.466 -4.073 7.650 Atomic orbital electron populations 1.22956 0.79183 1.02918 1.01551 1.85984 1.20678 1.27345 1.89430 1.18527 0.91254 0.83761 0.98893 1.21263 0.99679 0.91288 1.08607 1.18159 0.92130 0.90548 0.94078 1.19462 0.96977 0.95220 0.99458 1.67058 1.03729 1.25158 1.18892 1.21677 1.02416 0.91080 1.04949 1.21367 0.97288 0.98466 0.96755 1.21215 0.98127 1.00099 1.04229 1.18416 0.93506 0.91279 0.91098 1.19582 1.07714 0.96651 1.20639 0.87706 1.26259 0.93524 1.00582 0.93574 1.69644 1.19249 1.31690 1.20160 0.86355 0.77210 0.80102 0.82647 1.19218 1.21304 1.16937 1.21325 0.93049 0.98651 1.00779 1.20683 0.99364 0.90896 1.00050 1.18312 0.89651 0.93678 1.08716 1.20713 0.90371 0.97193 1.02780 1.23059 0.96149 1.02984 0.99744 1.22987 1.04268 1.02139 0.91848 0.92910 0.92753 0.88976 0.85727 0.85623 0.87771 0.86974 0.89889 0.84681 0.85930 0.87271 0.88330 0.88966 0.89109 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.32 -5.25 9.66 -19.47 -0.19 -5.44 16 3 C 0.12 2.22 6.65 -39.27 -0.26 1.95 16 4 C -0.19 -3.79 8.65 -39.01 -0.34 -4.13 16 5 C 0.05 1.15 5.26 -104.93 -0.55 0.59 16 6 C 0.03 0.70 6.43 -82.23 -0.53 0.17 16 7 N -0.44 -10.27 10.15 -9.16 -0.09 -10.36 16 8 C -0.04 -0.91 11.16 -17.36 -0.19 -1.10 16 9 C -0.12 -2.49 10.03 -39.84 -0.40 -2.89 16 10 C -0.21 -4.89 7.31 -38.97 -0.29 -5.18 16 11 C 0.06 1.53 5.12 -106.41 -0.54 0.98 16 12 C -0.42 -10.49 7.20 -37.90 -0.27 -10.76 16 13 H 0.11 2.79 6.71 -52.48 -0.35 2.44 16 14 C 0.08 2.00 5.44 -17.31 -0.09 1.90 16 15 N -0.79 -19.27 13.92 55.55 0.77 -18.50 16 16 Si 0.91 19.38 24.53 -169.99 -4.17 15.21 16 17 H -0.27 -5.48 6.46 56.52 0.37 -5.11 16 18 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.25 -5.47 7.00 56.52 0.40 -5.07 16 20 C -0.12 -2.48 7.86 -39.15 -0.31 -2.78 16 21 C -0.09 -1.67 9.28 -39.66 -0.37 -2.04 16 22 C -0.10 -1.81 5.63 -104.36 -0.59 -2.40 16 23 C -0.09 -1.36 5.74 -91.78 -0.53 -1.89 16 24 C -0.18 -2.29 9.86 -26.74 -0.26 -2.55 16 25 C -0.18 -2.20 10.16 -26.74 -0.27 -2.47 16 26 H 0.05 0.68 7.65 -51.93 -0.40 0.28 16 27 H 0.05 0.69 7.67 -51.93 -0.40 0.29 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.12 2.41 6.29 -52.49 -0.33 2.08 16 30 H 0.13 2.28 8.06 -52.48 -0.42 1.85 16 31 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 32 H 0.11 2.52 4.52 -52.49 -0.24 2.29 16 33 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16 34 H 0.14 2.92 6.73 -52.49 -0.35 2.57 16 35 H 0.12 1.93 6.00 -52.49 -0.31 1.62 16 36 H 0.11 1.58 7.75 -51.93 -0.40 1.18 16 37 H 0.10 1.25 6.16 -51.93 -0.32 0.93 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -27.22 326.87 -8.37 -35.59 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.82 Total: 9.79 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: -4.80 Total: -31.21 kcal Atomic # 7 Polarization: -29.54 SS G_CDS: 0.68 Total: -28.86 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.19 Total: -5.44 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.17 Total: 15.21 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.22 -8.37 -35.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244886369.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.437 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds