Wall clock time and date at job start Tue Mar 31 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35913 * 116.99777 * 2 1 4 4 C 1.38449 * 119.97863 * 0.28610 * 3 2 1 5 5 C 1.39567 * 119.78393 * 180.20540 * 4 3 2 6 6 C 1.47833 * 120.12135 * 179.78958 * 5 4 3 7 7 N 1.32577 * 119.98891 * 316.17526 * 6 5 4 8 8 C 1.31735 * 121.71848 * 180.02562 * 7 6 5 9 9 C 1.38872 * 121.50843 * 359.97438 * 8 7 6 10 10 C 1.36885 * 119.79948 * 0.02562 * 9 8 7 11 11 C 1.41131 * 118.39230 * 0.02562 * 10 9 8 12 12 C 1.40876 * 120.72137 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00492 * 150.54997 * 12 11 10 14 14 C 1.40076 * 119.99884 * 330.54793 * 12 11 10 15 15 N 1.30771 * 119.99975 * 163.13341 * 14 12 11 16 16 Si 1.86800 * 119.99907 * 343.13647 * 14 12 11 17 17 H 1.48495 * 109.47021 * 90.33209 * 16 14 12 18 18 H 1.48502 * 109.46652 * 210.32838 * 16 14 12 19 19 H 1.48489 * 109.47215 * 330.32779 * 16 14 12 20 20 C 1.39712 * 119.75359 * 359.51268 * 5 4 3 21 21 C 1.37925 * 119.96199 * 0.25260 * 20 5 4 22 22 C 1.38336 * 120.20674 * 359.97438 * 21 20 5 23 23 C 1.50697 * 119.87088 * 180.02562 * 22 21 20 24 24 C 1.52995 * 117.50121 * 8.62121 * 23 22 21 25 25 C 1.52994 * 117.50339 * 299.99605 * 23 22 21 26 26 H 1.09000 * 109.46813 * 299.99290 * 1 2 3 27 27 H 1.08995 * 109.47423 * 59.99443 * 1 2 3 28 28 H 1.08999 * 109.46964 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.10720 * 359.97192 * 4 3 2 30 30 H 1.08009 * 119.24918 * 180.02562 * 8 7 6 31 31 H 1.08003 * 120.10434 * 179.75175 * 9 8 7 32 32 H 1.07991 * 120.80873 * 179.97438 * 10 9 8 33 33 H 0.97000 * 120.00330 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.02074 * 180.27648 * 20 5 4 35 35 H 1.08000 * 119.90246 * 179.97438 * 21 20 5 36 36 H 1.08999 * 115.54543 * 154.33216 * 23 22 21 37 37 H 1.08997 * 117.50270 * 359.97438 * 24 23 22 38 38 H 1.09004 * 117.49502 * 145.02140 * 24 23 22 39 39 H 1.09000 * 117.50438 * 214.98485 * 25 23 22 40 40 H 1.09004 * 117.49603 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2915 2.3718 0.0060 5 6 1.9293 3.6133 0.0016 6 6 1.1309 4.8575 0.0033 7 7 0.0725 4.9667 -0.7876 8 6 -0.6626 6.0596 -0.8139 9 6 -0.3650 7.1539 -0.0123 10 6 0.7145 7.1081 0.8280 11 6 1.4983 5.9346 0.8503 12 6 2.6205 5.8346 1.6961 13 1 2.9248 4.8712 2.0780 14 6 3.3416 6.9846 2.0419 15 7 4.1592 6.9616 3.0622 16 14 3.1351 8.5512 1.0455 17 1 2.0433 9.3698 1.6310 18 1 4.4024 9.3249 1.0716 19 1 2.7958 8.2042 -0.3578 20 6 3.3250 3.6757 0.0016 21 6 4.0666 2.5128 0.0005 22 6 3.4328 1.2832 0.0001 23 6 4.2504 0.0173 -0.0005 24 6 5.7608 0.1518 0.2029 25 6 5.2036 -0.2076 -1.1759 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2129 2.3169 0.0102 30 1 -1.5168 6.1053 -1.4734 31 1 -0.9808 8.0401 -0.0551 32 1 0.9611 7.9497 1.4581 33 1 4.6583 7.7580 3.3018 34 1 3.8230 4.6341 0.0027 35 1 5.1454 2.5622 0.0001 36 1 3.7609 -0.8586 0.4252 37 1 6.1632 1.1559 0.3367 38 1 6.2653 -0.6358 0.7627 39 1 5.3415 -1.2315 -1.5233 40 1 5.2396 0.5603 -1.9487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244886369.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:36 Heat of formation + Delta-G solvation = 22.003608 kcal Electronic energy + Delta-G solvation = -23066.388044 eV Core-core repulsion = 19811.039100 eV Total energy + Delta-G solvation = -3255.348944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36198 -40.34907 -38.71218 -37.30819 -35.95393 -33.34582 -33.13827 -31.05320 -30.51923 -28.07175 -27.48426 -25.31635 -23.71225 -23.42244 -22.81869 -22.33313 -21.13158 -19.46500 -19.05483 -17.66873 -17.47320 -16.83353 -16.60684 -16.54450 -16.34509 -15.60338 -15.39844 -15.21092 -14.95565 -14.67544 -14.18692 -14.17278 -13.86574 -13.56299 -13.37515 -13.19039 -12.84703 -12.71601 -12.38544 -12.19463 -12.10113 -12.00234 -11.85908 -11.68202 -11.45632 -11.37098 -11.16064 -10.36425 -10.04742 -9.92218 -9.36197 -9.00304 -8.78444 -6.54585 0.03347 0.58453 0.67242 0.92467 1.20915 1.35123 1.42917 2.03287 2.42019 2.56191 2.73412 3.21258 3.48615 3.61004 3.75601 3.97764 4.08582 4.21674 4.24316 4.27363 4.36022 4.38213 4.39727 4.53761 4.55584 4.57829 4.69615 4.74268 4.75588 4.85806 4.99607 5.02777 5.04498 5.23754 5.25888 5.32560 5.46188 5.52113 5.62926 5.68192 5.87423 5.90434 5.92801 6.20693 6.48048 6.54712 6.63133 7.53388 8.04910 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.005533 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.984347 B = 5059.663734 C = 6410.064488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.322 6.322 3 C 0.118 3.882 4 C -0.195 4.195 5 C 0.020 3.980 6 C 0.015 3.985 7 N -0.460 5.460 8 C -0.036 4.036 9 C -0.117 4.117 10 C -0.224 4.224 11 C 0.043 3.957 12 C -0.440 4.440 13 H 0.073 0.927 14 C 0.054 3.946 15 N -0.821 5.821 16 Si 0.958 3.042 17 H -0.250 1.250 18 H -0.272 1.272 19 H -0.263 1.263 20 C -0.134 4.134 21 C -0.091 4.091 22 C -0.099 4.099 23 C -0.116 4.116 24 C -0.172 4.172 25 C -0.161 4.161 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.163 0.837 31 H 0.147 0.853 32 H 0.117 0.883 33 H 0.299 0.701 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -8.108 -5.297 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.236 6.236 3 C 0.073 3.927 4 C -0.215 4.215 5 C 0.019 3.981 6 C -0.124 4.124 7 N -0.167 5.167 8 C -0.195 4.195 9 C -0.137 4.137 10 C -0.250 4.250 11 C 0.038 3.962 12 C -0.469 4.469 13 H 0.091 0.909 14 C -0.164 4.164 15 N -0.445 5.445 16 Si 0.782 3.218 17 H -0.175 1.175 18 H -0.198 1.198 19 H -0.187 1.187 20 C -0.153 4.153 21 C -0.109 4.109 22 C -0.100 4.100 23 C -0.134 4.134 24 C -0.209 4.209 25 C -0.198 4.198 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.180 0.820 31 H 0.165 0.835 32 H 0.135 0.865 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.162 0.838 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.761 -8.906 -5.618 10.557 hybrid contribution -0.173 1.842 0.666 1.966 sum -0.934 -7.064 -4.952 8.677 Atomic orbital electron populations 1.23247 0.77279 1.05344 1.01395 1.85988 1.22584 1.25979 1.89026 1.18645 0.91779 0.84023 0.98222 1.21281 0.99880 0.91304 1.09013 1.18285 0.92610 0.90854 0.96313 1.19798 0.97383 0.95895 0.99313 1.67153 1.04092 1.26356 1.19124 1.22436 1.02403 0.90314 1.04386 1.21790 0.96687 0.99864 0.95351 1.21436 0.98795 0.99733 1.05004 1.18619 0.93750 0.92463 0.91337 1.19377 1.09212 0.95859 1.22424 0.90923 1.26789 0.93058 1.02503 0.94062 1.69655 1.20567 1.32937 1.21382 0.85632 0.78224 0.77616 0.80327 1.17511 1.19767 1.18721 1.21247 0.93016 0.98861 1.02194 1.20892 1.00350 0.90357 0.99271 1.18695 0.89939 0.94791 1.06553 1.20738 0.91345 0.95776 1.05589 1.23163 0.94148 1.03624 0.99967 1.23068 1.01974 1.03383 0.91349 0.93224 0.92760 0.85262 0.85621 0.81957 0.83536 0.86506 0.88973 0.86624 0.83800 0.86867 0.88712 0.86746 0.86749 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.81 113.37 1.11 1.65 16 2 O -0.32 -10.23 9.66 -92.57 -0.89 -11.12 16 3 C 0.12 4.38 6.65 22.47 0.15 4.53 16 4 C -0.20 -8.07 8.65 22.64 0.20 -7.87 16 5 C 0.02 0.94 5.26 -20.06 -0.11 0.84 16 6 C 0.02 0.75 6.43 42.47 0.27 1.03 16 7 N -0.46 -21.31 10.15 -182.91 -1.86 -23.17 16 8 C -0.04 -1.47 11.16 84.86 0.95 -0.52 16 9 C -0.12 -4.64 10.03 22.10 0.22 -4.42 16 10 C -0.22 -10.25 7.31 22.66 0.17 -10.09 16 11 C 0.04 2.19 5.12 -21.03 -0.11 2.08 16 12 C -0.44 -23.33 7.20 23.36 0.17 -23.16 16 13 H 0.07 4.20 6.71 -2.91 -0.02 4.18 16 14 C 0.05 2.71 5.44 85.30 0.46 3.17 16 15 N -0.82 -41.77 13.92 21.85 0.30 -41.46 16 16 Si 0.96 40.06 24.53 68.60 1.68 41.74 16 17 H -0.25 -9.71 6.46 99.48 0.64 -9.06 16 18 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.26 -11.60 7.00 99.48 0.70 -10.90 16 20 C -0.13 -5.90 7.86 22.55 0.18 -5.73 16 21 C -0.09 -3.38 9.28 22.22 0.21 -3.17 16 22 C -0.10 -3.48 5.63 -19.69 -0.11 -3.59 16 23 C -0.12 -3.24 5.74 -11.54 -0.07 -3.30 16 24 C -0.17 -3.92 9.86 30.59 0.30 -3.61 16 25 C -0.16 -3.62 10.16 30.59 0.31 -3.31 16 26 H 0.05 1.24 7.65 -2.39 -0.02 1.22 16 27 H 0.05 1.33 7.67 -2.39 -0.02 1.31 16 28 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.13 5.00 6.29 -2.91 -0.02 4.98 16 30 H 0.16 5.27 8.06 -2.91 -0.02 5.25 16 31 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.12 5.15 4.52 -2.92 -0.01 5.13 16 33 H 0.30 13.58 8.30 -92.71 -0.77 12.81 16 34 H 0.12 5.43 6.73 -2.91 -0.02 5.41 16 35 H 0.14 4.57 6.00 -2.91 -0.02 4.55 16 36 H 0.11 3.06 7.75 -2.39 -0.02 3.05 16 37 H 0.09 2.23 6.16 -2.39 -0.01 2.22 16 38 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -60.90 326.87 4.53 -56.37 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.99 Total: 33.12 kcal Atomic # 6 Polarization: -59.78 SS G_CDS: 4.30 Total: -55.47 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -1.55 Total: -64.63 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -0.89 Total: -11.12 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 1.68 Total: 41.74 kcal Total: -60.90 4.53 -56.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244886369.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.372 kcal (2) G-P(sol) polarization free energy of solvation -60.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds