Wall clock time and date at job start Tue Mar 31 2020 06:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00041 * 2 1 4 4 C 1.38539 * 119.99654 * 0.25208 * 3 2 1 5 5 C 1.39247 * 119.82235 * 180.29342 * 4 3 2 6 6 C 1.48375 * 120.10084 * 179.70504 * 5 4 3 7 7 C 1.38892 * 119.61757 * 185.02196 * 6 5 4 8 8 C 1.40844 * 118.76445 * 179.97438 * 7 6 5 9 9 C 1.41525 * 120.98633 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00162 * 330.86400 * 9 8 7 11 11 C 1.40045 * 119.99912 * 150.87251 * 9 8 7 12 12 N 1.30736 * 120.00124 * 161.62348 * 11 9 8 13 13 Si 1.86795 * 120.00065 * 341.61524 * 11 9 8 14 14 H 1.48500 * 109.47314 * 95.39922 * 13 11 9 15 15 H 1.48504 * 109.47406 * 215.39670 * 13 11 9 16 16 H 1.48496 * 109.47408 * 335.39862 * 13 11 9 17 17 C 1.41137 * 118.02449 * 0.02562 * 8 7 6 18 18 C 1.37742 * 119.07615 * 359.97438 * 17 8 7 19 19 N 1.31928 * 121.15161 * 359.73009 * 18 17 8 20 20 C 1.39391 * 119.80976 * 359.72570 * 5 4 3 21 21 C 1.38025 * 119.98628 * 0.02562 * 20 5 4 22 22 C 1.38248 * 120.18229 * 359.97438 * 21 20 5 23 23 C 1.50700 * 119.90585 * 180.02562 * 22 21 20 24 24 C 1.53001 * 117.49869 * 59.99748 * 23 22 21 25 25 C 1.52997 * 60.00249 * 252.51144 * 24 23 22 26 26 H 1.08997 * 109.47085 * 60.00139 * 1 2 3 27 27 H 1.09005 * 109.46627 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46957 * 299.99690 * 1 2 3 29 29 H 1.08005 * 120.08817 * 0.03819 * 4 3 2 30 30 H 1.07998 * 120.61628 * 359.97438 * 7 6 5 31 31 H 0.96998 * 120.00330 * 179.97438 * 12 11 9 32 32 H 1.08007 * 120.46159 * 179.97438 * 17 8 7 33 33 H 1.08000 * 119.42309 * 180.02562 * 18 17 8 34 34 H 1.07998 * 120.01287 * 179.97438 * 20 5 4 35 35 H 1.08005 * 119.91089 * 180.02562 * 21 20 5 36 36 H 1.09005 * 115.56338 * 205.68964 * 23 22 21 37 37 H 1.09005 * 117.49835 * 145.01902 * 24 23 22 38 38 H 1.08999 * 117.49753 * 0.02562 * 24 23 22 39 39 H 1.08998 * 117.49906 * 107.48471 * 25 24 23 40 40 H 1.08996 * 117.50122 * 252.48773 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3727 0.0053 5 6 1.9273 3.6115 -0.0009 6 6 1.1252 4.8597 -0.0019 7 6 1.7656 6.0871 -0.1138 8 6 0.9866 7.2606 -0.1134 9 6 1.5902 8.5358 -0.2243 10 1 2.5916 8.6935 0.1481 11 6 0.8888 9.5933 -0.8168 12 7 1.2685 10.8270 -0.6095 13 14 -0.5890 9.2411 -1.9036 14 1 -1.8322 9.3468 -1.0982 15 1 -0.6333 10.2265 -3.0137 16 1 -0.4767 7.8701 -2.4630 17 6 -0.4137 7.1269 0.0021 18 6 -0.9593 5.8666 0.1083 19 7 -0.1971 4.7899 0.0984 20 6 3.3197 3.6756 -0.0066 21 6 4.0638 2.5131 -0.0066 22 6 3.4320 1.2835 -0.0005 23 6 4.2506 0.0182 0.0000 24 6 5.2087 -0.2029 1.1722 25 6 5.7601 0.1532 -0.2098 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2128 2.3178 0.0100 30 1 2.8408 6.1407 -0.1995 31 1 0.7830 11.5595 -1.0201 32 1 -1.0485 8.0007 0.0071 33 1 -2.0302 5.7579 0.1965 34 1 3.8163 4.6346 -0.0119 35 1 5.1427 2.5642 -0.0106 36 1 3.7603 -0.8594 -0.4217 37 1 5.3488 -1.2259 1.5217 38 1 5.2467 0.5667 1.9432 39 1 6.1611 1.1573 -0.3482 40 1 6.2633 -0.6352 -0.7694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244887780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:39 Heat of formation + Delta-G solvation = 33.311742 kcal Electronic energy + Delta-G solvation = -22381.417592 eV Core-core repulsion = 19126.559005 eV Total energy + Delta-G solvation = -3254.858587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.21467 -38.68914 -37.74713 -36.29695 -34.11615 -31.80455 -31.35857 -29.91534 -28.85036 -27.02931 -25.98190 -24.10652 -22.78088 -22.24094 -21.25046 -20.88654 -20.01712 -18.22974 -17.01109 -16.44014 -15.90651 -15.72020 -15.57756 -14.86424 -14.66947 -14.43081 -14.24200 -14.02389 -13.38783 -13.15281 -13.11209 -12.96823 -12.41208 -12.15124 -11.92742 -11.67274 -11.54411 -11.26787 -11.10381 -10.97850 -10.82819 -10.79222 -10.65397 -10.50503 -10.27131 -9.90408 -9.47755 -8.77822 -8.36087 -8.23491 -8.06847 -7.33932 -7.14387 -4.79398 1.21559 1.72405 2.46201 2.62494 3.00601 3.10828 3.20772 3.42210 3.76831 3.83999 4.16258 4.53371 4.59336 4.87027 4.96158 5.01388 5.05939 5.22907 5.26889 5.33054 5.36579 5.45890 5.56324 5.58275 5.66134 5.78500 5.81935 5.89610 6.06218 6.15039 6.18081 6.33545 6.39551 6.48312 6.51903 6.73863 6.85000 6.91317 6.97786 7.05773 7.20125 7.55884 7.57412 7.83198 8.12959 8.35288 8.56847 9.23064 9.86669 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.003710 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.714088 B = 7544.621872 C = 8474.705053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.174 4.174 5 C 0.017 3.983 6 C 0.157 3.843 7 C -0.232 4.232 8 C 0.108 3.892 9 C -0.438 4.438 10 H 0.095 0.905 11 C 0.087 3.913 12 N -0.795 5.795 13 Si 0.914 3.086 14 H -0.267 1.267 15 H -0.287 1.287 16 H -0.246 1.246 17 C -0.285 4.285 18 C 0.120 3.880 19 N -0.565 5.565 20 C -0.139 4.139 21 C -0.089 4.089 22 C -0.093 4.093 23 C -0.098 4.098 24 C -0.173 4.173 25 C -0.182 4.182 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.140 0.860 30 H 0.114 0.886 31 H 0.289 0.711 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 -15.990 0.025 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.077 3.923 4 C -0.193 4.193 5 C 0.016 3.984 6 C 0.026 3.974 7 C -0.255 4.255 8 C 0.100 3.900 9 C -0.468 4.468 10 H 0.113 0.887 11 C -0.134 4.134 12 N -0.418 5.418 13 Si 0.740 3.260 14 H -0.193 1.193 15 H -0.215 1.215 16 H -0.169 1.169 17 C -0.308 4.308 18 C -0.035 4.035 19 N -0.280 5.280 20 C -0.158 4.158 21 C -0.107 4.107 22 C -0.094 4.094 23 C -0.116 4.116 24 C -0.210 4.210 25 C -0.218 4.218 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.163 -16.720 0.075 16.860 hybrid contribution -0.595 1.274 -0.507 1.494 sum 1.568 -15.447 -0.432 15.532 Atomic orbital electron populations 1.23017 0.78672 1.03242 1.01841 1.86001 1.21089 1.26969 1.89120 1.18647 0.91307 0.84140 0.98158 1.21370 1.00867 0.90856 1.06219 1.18555 0.92200 0.91618 0.96047 1.19199 0.89945 0.90749 0.97534 1.21926 0.99624 0.91819 1.12102 1.17862 0.91215 0.93227 0.87685 1.19521 1.02945 0.91123 1.33176 0.88680 1.26195 0.97891 0.94040 0.95321 1.69641 1.38067 1.00081 1.34025 0.86263 0.80351 0.80079 0.79350 1.19281 1.21465 1.16901 1.21962 0.96218 0.97515 1.15099 1.21887 0.97950 0.88364 0.95294 1.67325 1.05001 1.32671 1.23045 1.21198 0.92975 0.98632 1.03017 1.20698 0.99559 0.90790 0.99674 1.18385 0.89821 0.93860 1.07355 1.20756 0.90406 0.97103 1.03303 1.23005 1.03733 1.02472 0.91785 1.23066 0.95887 1.03023 0.99849 0.92601 0.88717 0.92534 0.84191 0.86834 0.90040 0.87366 0.85464 0.85180 0.85482 0.87000 0.88860 0.88684 0.88381 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.51 9.66 -19.44 -0.19 -4.70 16 3 C 0.12 1.94 6.65 -39.27 -0.26 1.68 16 4 C -0.17 -3.06 8.56 -39.10 -0.33 -3.39 16 5 C 0.02 0.32 5.87 -104.92 -0.62 -0.29 16 6 C 0.16 3.47 6.72 -83.04 -0.56 2.92 16 7 C -0.23 -5.37 9.24 -38.35 -0.35 -5.72 16 8 C 0.11 2.69 5.13 -106.56 -0.55 2.14 16 9 C -0.44 -11.41 9.63 -37.65 -0.36 -11.77 16 10 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 11 C 0.09 2.19 5.42 -17.34 -0.09 2.10 16 12 N -0.79 -20.25 13.92 55.55 0.77 -19.48 16 13 Si 0.91 20.04 24.54 -169.99 -4.17 15.87 16 14 H -0.27 -5.63 6.71 56.52 0.38 -5.25 16 15 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.25 -5.63 6.85 56.52 0.39 -5.24 16 17 C -0.29 -6.73 7.29 -38.66 -0.28 -7.01 16 18 C 0.12 2.63 11.15 -17.69 -0.20 2.43 16 19 N -0.57 -12.68 9.41 -9.94 -0.09 -12.78 16 20 C -0.14 -2.34 9.41 -39.23 -0.37 -2.71 16 21 C -0.09 -1.29 9.28 -39.66 -0.37 -1.66 16 22 C -0.09 -1.37 5.63 -104.41 -0.59 -1.96 16 23 C -0.10 -1.18 5.74 -91.77 -0.53 -1.71 16 24 C -0.17 -1.78 10.16 -26.73 -0.27 -2.05 16 25 C -0.18 -1.80 9.86 -26.73 -0.26 -2.06 16 26 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 29 H 0.14 2.44 5.77 -52.48 -0.30 2.14 16 30 H 0.11 2.41 6.21 -52.49 -0.33 2.09 16 31 H 0.29 6.62 8.29 -40.82 -0.34 6.29 16 32 H 0.11 2.49 4.76 -52.48 -0.25 2.24 16 33 H 0.13 2.36 8.06 -52.49 -0.42 1.93 16 34 H 0.13 2.08 6.20 -52.49 -0.33 1.76 16 35 H 0.13 1.50 6.00 -52.48 -0.32 1.19 16 36 H 0.11 1.35 7.75 -51.93 -0.40 0.95 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.10 0.94 6.17 -51.93 -0.32 0.62 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 328.90 15.07 4.96 4.96 Total: -1.00 -28.09 328.90 -8.47 -36.56 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.75 Total: 7.35 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: -5.00 Total: -27.79 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.68 Total: -32.25 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.19 Total: -4.70 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.17 Total: 15.87 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.09 -8.47 -36.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244887780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.872 kcal (2) G-P(sol) polarization free energy of solvation -28.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds