Wall clock time and date at job start Tue Mar 31 2020 06:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00041 * 2 1 4 4 C 1.38539 * 119.99654 * 0.25208 * 3 2 1 5 5 C 1.39247 * 119.82235 * 180.29342 * 4 3 2 6 6 C 1.48375 * 120.10084 * 179.70504 * 5 4 3 7 7 C 1.38892 * 119.61757 * 185.02196 * 6 5 4 8 8 C 1.40844 * 118.76445 * 179.97438 * 7 6 5 9 9 C 1.41525 * 120.98633 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00162 * 330.86400 * 9 8 7 11 11 C 1.40045 * 119.99912 * 150.87251 * 9 8 7 12 12 N 1.30736 * 120.00124 * 161.62348 * 11 9 8 13 13 Si 1.86795 * 120.00065 * 341.61524 * 11 9 8 14 14 H 1.48500 * 109.47314 * 95.39922 * 13 11 9 15 15 H 1.48504 * 109.47406 * 215.39670 * 13 11 9 16 16 H 1.48496 * 109.47408 * 335.39862 * 13 11 9 17 17 C 1.41137 * 118.02449 * 0.02562 * 8 7 6 18 18 C 1.37742 * 119.07615 * 359.97438 * 17 8 7 19 19 N 1.31928 * 121.15161 * 359.73009 * 18 17 8 20 20 C 1.39391 * 119.80976 * 359.72570 * 5 4 3 21 21 C 1.38025 * 119.98628 * 0.02562 * 20 5 4 22 22 C 1.38248 * 120.18229 * 359.97438 * 21 20 5 23 23 C 1.50700 * 119.90585 * 180.02562 * 22 21 20 24 24 C 1.53001 * 117.49869 * 59.99748 * 23 22 21 25 25 C 1.52997 * 60.00249 * 252.51144 * 24 23 22 26 26 H 1.08997 * 109.47085 * 60.00139 * 1 2 3 27 27 H 1.09005 * 109.46627 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46957 * 299.99690 * 1 2 3 29 29 H 1.08005 * 120.08817 * 0.03819 * 4 3 2 30 30 H 1.07998 * 120.61628 * 359.97438 * 7 6 5 31 31 H 0.96998 * 120.00330 * 179.97438 * 12 11 9 32 32 H 1.08007 * 120.46159 * 179.97438 * 17 8 7 33 33 H 1.08000 * 119.42309 * 180.02562 * 18 17 8 34 34 H 1.07998 * 120.01287 * 179.97438 * 20 5 4 35 35 H 1.08005 * 119.91089 * 180.02562 * 21 20 5 36 36 H 1.09005 * 115.56338 * 205.68964 * 23 22 21 37 37 H 1.09005 * 117.49835 * 145.01902 * 24 23 22 38 38 H 1.08999 * 117.49753 * 0.02562 * 24 23 22 39 39 H 1.08998 * 117.49906 * 107.48471 * 25 24 23 40 40 H 1.08996 * 117.50122 * 252.48773 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3727 0.0053 5 6 1.9273 3.6115 -0.0009 6 6 1.1252 4.8597 -0.0019 7 6 1.7656 6.0871 -0.1138 8 6 0.9866 7.2606 -0.1134 9 6 1.5902 8.5358 -0.2243 10 1 2.5916 8.6935 0.1481 11 6 0.8888 9.5933 -0.8168 12 7 1.2685 10.8270 -0.6095 13 14 -0.5890 9.2411 -1.9036 14 1 -1.8322 9.3468 -1.0982 15 1 -0.6333 10.2265 -3.0137 16 1 -0.4767 7.8701 -2.4630 17 6 -0.4137 7.1269 0.0021 18 6 -0.9593 5.8666 0.1083 19 7 -0.1971 4.7899 0.0984 20 6 3.3197 3.6756 -0.0066 21 6 4.0638 2.5131 -0.0066 22 6 3.4320 1.2835 -0.0005 23 6 4.2506 0.0182 0.0000 24 6 5.2087 -0.2029 1.1722 25 6 5.7601 0.1532 -0.2098 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2128 2.3178 0.0100 30 1 2.8408 6.1407 -0.1995 31 1 0.7830 11.5595 -1.0201 32 1 -1.0485 8.0007 0.0071 33 1 -2.0302 5.7579 0.1965 34 1 3.8163 4.6346 -0.0119 35 1 5.1427 2.5642 -0.0106 36 1 3.7603 -0.8594 -0.4217 37 1 5.3488 -1.2259 1.5217 38 1 5.2467 0.5667 1.9432 39 1 6.1611 1.1573 -0.3482 40 1 6.2633 -0.6352 -0.7694 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244887780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:39 Heat of formation + Delta-G solvation = 19.035532 kcal Electronic energy + Delta-G solvation = -22382.036655 eV Core-core repulsion = 19126.559005 eV Total energy + Delta-G solvation = -3255.477650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44330 -40.35186 -38.77116 -37.45806 -35.96030 -33.46869 -32.98223 -31.17738 -30.26712 -28.20709 -27.71814 -25.45180 -24.12175 -23.18968 -22.74763 -22.34730 -21.20042 -19.81266 -18.50873 -17.76621 -17.46079 -16.99542 -16.63969 -16.32203 -16.14249 -16.04168 -15.51104 -15.17917 -14.86832 -14.77166 -14.69314 -14.33009 -13.74244 -13.44568 -13.37909 -12.93370 -12.84840 -12.78776 -12.56244 -12.38168 -12.14507 -12.02400 -11.83599 -11.72322 -11.60633 -11.28652 -11.17489 -10.24356 -10.14927 -10.03509 -9.41526 -9.03343 -8.76866 -6.75791 -0.22899 0.46540 0.67115 0.98658 1.23377 1.37121 1.44659 2.05398 2.37878 2.46866 2.77337 3.17921 3.39224 3.51539 3.65818 3.83473 4.02415 4.12842 4.19510 4.27089 4.28807 4.38708 4.42107 4.46543 4.52006 4.63278 4.67549 4.71678 4.74840 4.83769 4.88855 5.00734 5.08503 5.20219 5.21800 5.24893 5.32386 5.38779 5.55785 5.63047 5.70595 5.79035 6.01034 6.18692 6.42418 6.47115 6.63170 7.44863 8.03705 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.003710 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.714088 B = 7544.621872 C = 8474.705053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.321 6.321 3 C 0.116 3.884 4 C -0.178 4.178 5 C -0.019 4.019 6 C 0.159 3.841 7 C -0.252 4.252 8 C 0.096 3.904 9 C -0.472 4.472 10 H 0.066 0.934 11 C 0.056 3.944 12 N -0.829 5.829 13 Si 0.965 3.035 14 H -0.249 1.249 15 H -0.272 1.272 16 H -0.263 1.263 17 C -0.299 4.299 18 C 0.120 3.880 19 N -0.567 5.567 20 C -0.143 4.143 21 C -0.085 4.085 22 C -0.085 4.085 23 C -0.121 4.121 24 C -0.165 4.165 25 C -0.167 4.167 26 H 0.053 0.947 27 H 0.128 0.872 28 H 0.054 0.946 29 H 0.137 0.863 30 H 0.121 0.879 31 H 0.300 0.700 32 H 0.114 0.886 33 H 0.166 0.834 34 H 0.130 0.870 35 H 0.157 0.843 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -18.675 -0.304 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.234 6.234 3 C 0.071 3.929 4 C -0.197 4.197 5 C -0.020 4.020 6 C 0.028 3.972 7 C -0.275 4.275 8 C 0.088 3.912 9 C -0.503 4.503 10 H 0.084 0.916 11 C -0.162 4.162 12 N -0.454 5.454 13 Si 0.788 3.212 14 H -0.174 1.174 15 H -0.198 1.198 16 H -0.187 1.187 17 C -0.322 4.322 18 C -0.035 4.035 19 N -0.282 5.282 20 C -0.162 4.162 21 C -0.102 4.102 22 C -0.086 4.086 23 C -0.139 4.139 24 C -0.202 4.202 25 C -0.204 4.204 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.072 0.928 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.183 0.817 34 H 0.148 0.852 35 H 0.175 0.825 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.020 -19.396 -0.244 19.503 hybrid contribution -0.480 1.831 -0.342 1.924 sum 1.540 -17.565 -0.586 17.642 Atomic orbital electron populations 1.23269 0.77073 1.05392 1.01617 1.86008 1.22703 1.25914 1.88820 1.18775 0.91948 0.84196 0.97970 1.21347 1.00882 0.91004 1.06511 1.18552 0.92992 0.90935 0.99566 1.19658 0.90174 0.91741 0.95616 1.22097 1.00215 0.92010 1.13142 1.18050 0.92335 0.93190 0.87650 1.19503 1.02380 0.92669 1.35714 0.91572 1.26813 1.00007 0.93602 0.95807 1.69649 1.39623 1.00818 1.35276 0.85489 0.78254 0.79135 0.78325 1.17370 1.19783 1.18681 1.22113 0.95685 0.98603 1.15773 1.22477 0.99764 0.87549 0.93724 1.67468 1.05221 1.32837 1.22637 1.21309 0.92320 0.99702 1.02900 1.20983 1.00909 0.89848 0.98479 1.18799 0.89845 0.95149 1.04815 1.20779 0.91489 0.95841 1.05748 1.23086 1.02085 1.03440 0.91613 1.23192 0.93725 1.03998 0.99466 0.92815 0.85419 0.92766 0.84564 0.86142 0.88940 0.86811 0.81687 0.85171 0.82528 0.86926 0.87152 0.89087 0.87925 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.32 -8.51 9.66 -92.47 -0.89 -9.40 16 3 C 0.12 3.54 6.65 22.47 0.15 3.69 16 4 C -0.18 -6.18 8.56 22.58 0.19 -5.98 16 5 C -0.02 -0.75 5.87 -20.06 -0.12 -0.87 16 6 C 0.16 7.14 6.72 41.86 0.28 7.42 16 7 C -0.25 -12.04 9.24 23.06 0.21 -11.83 16 8 C 0.10 4.89 5.13 -21.12 -0.11 4.78 16 9 C -0.47 -25.82 9.63 23.52 0.23 -25.59 16 10 H 0.07 3.85 8.06 -2.91 -0.02 3.83 16 11 C 0.06 2.88 5.42 85.29 0.46 3.35 16 12 N -0.83 -43.33 13.92 21.84 0.30 -43.03 16 13 Si 0.97 41.24 24.54 68.60 1.68 42.92 16 14 H -0.25 -9.84 6.71 99.48 0.67 -9.17 16 15 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 16 H -0.26 -11.86 6.85 99.48 0.68 -11.17 16 17 C -0.30 -14.09 7.29 22.86 0.17 -13.93 16 18 C 0.12 5.11 11.15 84.56 0.94 6.06 16 19 N -0.57 -25.15 9.41 -185.36 -1.74 -26.89 16 20 C -0.14 -4.77 9.41 22.50 0.21 -4.56 16 21 C -0.08 -2.30 9.28 22.22 0.21 -2.09 16 22 C -0.09 -2.33 5.63 -19.73 -0.11 -2.44 16 23 C -0.12 -2.58 5.74 -11.54 -0.07 -2.64 16 24 C -0.17 -2.85 10.16 30.59 0.31 -2.54 16 25 C -0.17 -2.69 9.86 30.59 0.30 -2.39 16 26 H 0.05 1.12 7.67 -2.39 -0.02 1.10 16 27 H 0.13 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.05 1.13 7.65 -2.39 -0.02 1.11 16 29 H 0.14 4.70 5.77 -2.91 -0.02 4.69 16 30 H 0.12 5.38 6.21 -2.91 -0.02 5.37 16 31 H 0.30 13.92 8.29 -92.71 -0.77 13.15 16 32 H 0.11 5.15 4.76 -2.91 -0.01 5.13 16 33 H 0.17 5.67 8.06 -2.91 -0.02 5.65 16 34 H 0.13 4.22 6.20 -2.91 -0.02 4.21 16 35 H 0.16 3.25 6.00 -2.91 -0.02 3.23 16 36 H 0.11 2.41 7.75 -2.38 -0.02 2.39 16 37 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.10 1.57 6.17 -2.39 -0.01 1.55 16 40 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -61.93 328.90 4.73 -57.20 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 1.01 Total: 27.24 kcal Atomic # 6 Polarization: -52.41 SS G_CDS: 4.38 Total: -48.03 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -1.44 Total: -69.92 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.89 Total: -9.40 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 1.68 Total: 42.92 kcal Total: -61.93 4.73 -57.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244887780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.232 kcal (2) G-P(sol) polarization free energy of solvation -61.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds