Wall clock time and date at job start Tue Mar 31 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35909 * 116.99926 * 2 1 4 4 C 1.38530 * 119.99438 * 0.27484 * 3 2 1 5 5 C 1.39287 * 119.81637 * 180.25007 * 4 3 2 6 6 C 1.48314 * 120.10114 * 179.74626 * 5 4 3 7 7 C 1.39898 * 119.60599 * 184.75022 * 6 5 4 8 8 C 1.38694 * 119.45978 * 180.02562 * 7 6 5 9 9 C 1.38291 * 118.69212 * 359.74400 * 8 7 6 10 10 C 1.40684 * 119.18609 * 0.47714 * 9 8 7 11 11 C 1.41376 * 119.76839 * 179.78701 * 10 9 8 12 12 H 1.07998 * 120.00424 * 0.56380 * 11 10 9 13 13 C 1.40020 * 119.99928 * 180.55496 * 11 10 9 14 14 N 1.30750 * 120.00194 * 177.13595 * 13 11 10 15 15 Si 1.86801 * 120.00039 * 356.86038 * 13 11 10 16 16 H 1.48501 * 109.46961 * 180.27637 * 15 13 11 17 17 H 1.48508 * 109.46989 * 300.27458 * 15 13 11 18 18 H 1.48492 * 109.47157 * 60.27473 * 15 13 11 19 19 N 1.32214 * 119.60560 * 4.73039 * 6 5 4 20 20 C 1.39429 * 119.79918 * 359.47243 * 5 4 3 21 21 C 1.38013 * 119.98927 * 0.27937 * 20 5 4 22 22 C 1.38259 * 120.18050 * 359.97436 * 21 20 5 23 23 C 1.50702 * 119.90036 * 180.02562 * 22 21 20 24 24 C 1.53001 * 117.49795 * 8.61346 * 23 22 21 25 25 C 1.52995 * 60.00010 * 252.51387 * 24 23 22 26 26 H 1.08999 * 109.47089 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47538 * 300.00154 * 1 2 3 28 28 H 1.09001 * 109.47207 * 60.00059 * 1 2 3 29 29 H 1.08001 * 120.09181 * 0.02935 * 4 3 2 30 30 H 1.07992 * 120.27026 * 0.02562 * 7 6 5 31 31 H 1.08004 * 120.65480 * 180.02562 * 8 7 6 32 32 H 1.08000 * 120.41195 * 180.26962 * 9 8 7 33 33 H 0.97002 * 119.99528 * 354.14552 * 14 13 11 34 34 H 1.08005 * 120.00774 * 180.24543 * 20 5 4 35 35 H 1.07993 * 119.90864 * 179.97438 * 21 20 5 36 36 H 1.09003 * 115.55379 * 154.32813 * 23 22 21 37 37 H 1.09004 * 117.49964 * 0.02562 * 24 23 22 38 38 H 1.09002 * 117.49625 * 145.02534 * 24 23 22 39 39 H 1.08999 * 117.50062 * 252.50674 * 25 24 23 40 40 H 1.09005 * 117.49742 * 107.48947 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3727 0.0058 5 6 1.9275 3.6118 0.0005 6 6 1.1258 4.8595 0.0009 7 6 1.7716 6.0960 -0.1052 8 6 1.0189 7.2610 -0.1039 9 6 -0.3568 7.1625 -0.0025 10 6 -0.9474 5.8903 0.1061 11 6 -2.3522 5.7755 0.2150 12 1 -2.9689 6.6621 0.2055 13 6 -2.9443 4.5124 0.3350 14 7 -4.2382 4.4090 0.4920 15 14 -1.8865 2.9744 0.2630 16 1 -2.7484 1.7737 0.4070 17 1 -1.1778 2.9216 -1.0410 18 1 -0.8925 3.0053 1.3658 19 7 -0.1907 4.7900 0.1011 20 6 3.3204 3.6756 0.0005 21 6 4.0642 2.5131 0.0000 22 6 3.4321 1.2834 0.0000 23 6 4.2505 0.0180 0.0000 24 6 5.7609 0.1536 0.2033 25 6 5.2039 -0.2066 -1.1754 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 0.2128 2.3178 0.0107 30 1 2.8473 6.1431 -0.1873 31 1 1.4974 8.2258 -0.1852 32 1 -0.9700 8.0515 -0.0032 33 1 -4.7776 5.2065 0.6105 34 1 3.8171 4.6346 0.0004 35 1 5.1429 2.5640 -0.0003 36 1 3.7616 -0.8581 0.4260 37 1 6.1625 1.1580 0.3375 38 1 6.2659 -0.6335 0.7634 39 1 5.3425 -1.2306 -1.5224 40 1 5.2391 0.5609 -1.9486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244888121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:42 Heat of formation + Delta-G solvation = 36.059075 kcal Electronic energy + Delta-G solvation = -23168.875445 eV Core-core repulsion = 19914.135991 eV Total energy + Delta-G solvation = -3254.739454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23798 -38.77008 -37.72252 -36.31764 -33.92969 -31.89966 -31.31178 -29.88258 -29.19421 -27.16372 -25.55109 -24.13132 -22.64155 -22.07782 -21.70687 -20.60133 -20.03564 -18.46809 -17.76358 -16.39886 -15.98816 -15.60628 -15.48845 -14.96761 -14.84729 -14.57641 -14.24602 -13.51663 -13.30793 -13.23821 -13.03821 -12.49371 -12.44539 -12.15715 -12.03731 -11.69015 -11.57152 -11.33030 -10.94174 -10.89528 -10.78194 -10.59719 -10.57750 -10.32169 -9.97704 -9.66199 -9.46979 -8.85806 -8.59529 -8.07585 -7.83065 -7.45146 -7.33793 -4.89202 1.17808 1.71269 2.49879 2.62162 3.32827 3.48265 3.49222 3.78074 3.81800 4.16632 4.25192 4.57445 4.59993 4.87148 4.95764 5.01292 5.06593 5.30635 5.37873 5.38528 5.44126 5.48734 5.55145 5.60432 5.71245 5.78495 5.80121 5.87508 6.06030 6.09996 6.12762 6.21400 6.35912 6.40284 6.49135 6.69635 6.84354 6.91075 7.00228 7.18518 7.29758 7.37456 7.56104 7.60645 7.96838 8.18051 8.51825 9.30597 9.89686 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.017817 B = 0.005683 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.196470 B = 4926.225420 C = 6409.855889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.314 6.314 3 C 0.125 3.875 4 C -0.185 4.185 5 C 0.007 3.993 6 C 0.203 3.797 7 C -0.291 4.291 8 C -0.046 4.046 9 C -0.255 4.255 10 C 0.252 3.748 11 C -0.473 4.473 12 H 0.085 0.915 13 C 0.041 3.959 14 N -0.802 5.802 15 Si 1.142 2.858 16 H -0.328 1.328 17 H -0.285 1.285 18 H -0.279 1.279 19 N -0.566 5.566 20 C -0.135 4.135 21 C -0.091 4.091 22 C -0.089 4.089 23 C -0.098 4.098 24 C -0.181 4.181 25 C -0.172 4.172 26 H 0.105 0.895 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.141 0.859 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.285 0.715 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.799 -7.091 -1.070 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.227 6.227 3 C 0.080 3.920 4 C -0.203 4.203 5 C 0.006 3.994 6 C 0.064 3.936 7 C -0.314 4.314 8 C -0.070 4.070 9 C -0.278 4.278 10 C 0.128 3.872 11 C -0.505 4.505 12 H 0.103 0.897 13 C -0.180 4.180 14 N -0.424 5.424 15 Si 0.980 3.020 16 H -0.262 1.262 17 H -0.215 1.215 18 H -0.208 1.208 19 N -0.285 5.285 20 C -0.154 4.154 21 C -0.109 4.109 22 C -0.090 4.090 23 C -0.116 4.116 24 C -0.218 4.218 25 C -0.209 4.209 26 H 0.123 0.877 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.159 0.841 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.207 -9.572 -0.999 16.342 hybrid contribution -0.071 3.091 -0.057 3.093 sum 13.136 -6.480 -1.056 14.686 Atomic orbital electron populations 1.23238 0.78474 1.04121 1.02065 1.85995 1.21129 1.26669 1.88938 1.18674 0.91352 0.84232 0.97715 1.21968 1.01583 0.91376 1.05406 1.18570 0.92398 0.91525 0.96944 1.19309 0.89535 0.90877 0.93917 1.21105 0.98918 0.92259 1.19131 1.20930 0.93898 0.96908 0.95271 1.21691 0.94429 0.97742 1.13920 1.18557 0.93499 0.87011 0.88085 1.20788 0.90714 0.96369 1.42580 0.89731 1.27788 0.96580 1.04812 0.88852 1.70639 1.06065 1.35333 1.30361 0.82414 0.70134 0.70292 0.79177 1.26222 1.21491 1.20764 1.66217 1.05156 1.31112 1.26018 1.21102 0.92582 0.98494 1.03234 1.20678 0.99488 0.90775 0.99989 1.18410 0.89684 0.93998 1.06901 1.20770 0.90408 0.97119 1.03332 1.23060 0.95810 1.02943 0.99950 1.23005 1.03665 1.02512 0.91732 0.87716 0.92510 0.92356 0.84149 0.87195 0.87504 0.87497 0.90395 0.85249 0.85359 0.86798 0.88451 0.88729 0.88779 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.22 101.05 0.93 1.17 16 2 O -0.31 -5.21 9.66 -19.45 -0.19 -5.40 16 3 C 0.13 2.25 6.65 -39.27 -0.26 1.99 16 4 C -0.18 -3.82 8.27 -39.08 -0.32 -4.15 16 5 C 0.01 0.14 5.87 -104.92 -0.62 -0.48 16 6 C 0.20 4.69 6.73 -82.94 -0.56 4.13 16 7 C -0.29 -5.99 9.47 -38.79 -0.37 -6.36 16 8 C -0.05 -0.95 10.15 -39.39 -0.40 -1.35 16 9 C -0.26 -5.92 9.83 -38.64 -0.38 -6.30 16 10 C 0.25 6.61 6.43 -85.01 -0.55 6.07 16 11 C -0.47 -12.91 9.58 -37.72 -0.36 -13.27 16 12 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 13 C 0.04 1.12 5.52 -17.34 -0.10 1.02 16 14 N -0.80 -21.84 13.65 55.55 0.76 -21.08 16 15 Si 1.14 28.40 19.61 -169.99 -3.33 25.07 16 16 H -0.33 -7.76 7.11 56.52 0.40 -7.36 16 17 H -0.29 -7.07 6.62 56.52 0.37 -6.70 16 18 H -0.28 -6.95 6.32 56.52 0.36 -6.59 16 19 N -0.57 -14.63 4.18 -7.68 -0.03 -14.66 16 20 C -0.14 -2.23 9.41 -39.22 -0.37 -2.60 16 21 C -0.09 -1.32 9.28 -39.66 -0.37 -1.69 16 22 C -0.09 -1.38 5.63 -104.41 -0.59 -1.97 16 23 C -0.10 -1.24 5.74 -91.77 -0.53 -1.76 16 24 C -0.18 -1.78 9.86 -26.73 -0.26 -2.05 16 25 C -0.17 -1.79 10.16 -26.73 -0.27 -2.07 16 26 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 0.91 6.48 -51.93 -0.34 0.57 16 28 H 0.06 0.92 7.11 -51.93 -0.37 0.55 16 29 H 0.14 3.11 0.63 -52.49 -0.03 3.08 16 30 H 0.11 1.90 6.20 -52.49 -0.33 1.57 16 31 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 33 H 0.28 7.36 8.73 -40.82 -0.36 7.01 16 34 H 0.13 1.86 6.19 -52.48 -0.33 1.53 16 35 H 0.13 1.44 6.00 -52.49 -0.32 1.13 16 36 H 0.11 1.44 7.75 -51.93 -0.40 1.04 16 37 H 0.10 0.90 6.17 -51.93 -0.32 0.58 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -29.32 316.94 -7.99 -37.31 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.61 Total: 3.63 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: -5.36 Total: -29.65 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.73 Total: -35.74 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.19 Total: -5.40 kcal Atomic # 14 Polarization: 28.40 SS G_CDS: -3.33 Total: 25.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.32 -7.99 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244888121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.368 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds